Array 1 755722-751726 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZDM010000009.1 Bifidobacterium dentium strain 679B Contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================================================= ================== 755721 36 100.0 37 .................................... GACTGGTGAGTGTCACGGTGAGTGACAACGGCGACGG 755648 36 100.0 36 .................................... GGATCCCCATCTTCACGCGCCTTCATCAGGTTCTGT 755576 36 100.0 37 .................................... GTGAAATTCACGGGAATAACGGGGACGACGCAGGTTA 755503 36 100.0 35 .................................... CAGCGTTCACGGCAACAGTTCGACAGGTGGTTGAC 755432 36 100.0 35 .................................... TTGAAGACATGCTGGGCAAATGCCCGGCCGCACTG 755361 36 100.0 35 .................................... AAGGACGATACGCCATTCGACCTGCGGGACGGATA 755290 36 100.0 38 .................................... ACTGCGCAGGCTACATCTGCCTGGAATTAGCCGACTAC 755216 36 100.0 35 .................................... CGCTTACAATGATTCGCAGACCGCGCTCACACAGT 755145 36 100.0 35 .................................... TCGCCGCCGTGGAGCTGCTGAAGGAGCAAGGGCCC 755074 36 100.0 36 .................................... GCTACGAAGAGCAGTGTCGAGCAGACGGCTTCGGAG 755002 36 100.0 36 .................................... CCGCACATTGCGCCTTAAGCGCCGGAAGCAGGACAG 754930 36 100.0 34 .................................... GACATCACCGGTGTCACGGCTGCTCCCAGCTTAC 754860 36 100.0 36 .................................... TCTTCATGGAAGGTAGGGCAGCGCGTTCAGAATCCG 754788 36 100.0 39 .................................... TACACCATCACCGTCGCACAGCTCAAGGTAGTGGAGGAG 754713 36 100.0 36 .................................... GGGCCGGATTCTCGCGCCGATTGACCTGCCGAGCTT 754641 36 100.0 34 .................................... GGCAGGATTTGGGCGTTAGGTAATCCGAATGCGA 754571 36 100.0 34 .................................... AAGCTCGGCCATCTCGTCAGCGCCGGTGACGCAA 754501 36 100.0 35 .................................... GTGGGTTTGCGGCGGTCTGTTTTGAAGAATGTTCC 754430 36 100.0 38 .................................... TCGCTGGCCAGGGAGTCGATGAACGACGCGATGGACGG 754356 36 100.0 39 .................................... GATGAACAACGCTGTAAGTCACGTCAGAATCAGCGACAT 754281 36 100.0 38 .................................... TCCTCAACGAGATGGTGATTCACCGTCGTAAGAACACC 754207 36 100.0 35 .................................... ATGAAGAGGGGTGTGGCGTCAGTCGGTATGACACA 754136 36 100.0 36 .................................... CAGACCAAGGCCAATGCCGACGCCACGTATGCGACT 754064 36 100.0 35 .................................... TTGAAGTACTGGTAGCGCTCGCATTGCGTTGCGAG 753993 36 100.0 38 .................................... ACAGACTAATCTCAAGGCCACTAGCGATAGTCTGACCG 753919 36 100.0 35 .................................... ACGGACGTGTCGAAGATGTCGAACCCTCCGGTCAG 753848 36 100.0 37 .................................... GACTATCAGCTGAACCGTGTCTACGAAAACGGAGGAC 753775 36 100.0 35 .................................... TCGAGACGGAACAGATAATGGTGCGGGCAATAGTA 753704 36 100.0 35 .................................... TCGTCAATGGCGTCACTTTCCCGGATCTGCCGGGA 753633 36 100.0 36 .................................... TTTATCCACGTCCGTCTGCAACGACGTAACCTTGCT 753561 36 100.0 37 .................................... ATGGTCGACTGCGACGTGGACGCGCCGGAGCGTCGCA 753488 36 100.0 36 .................................... TTGATGGTGGTGCCGCTCATGGTGCCGGAGGCGAAC 753416 36 100.0 34 .................................... GGATGGCATGTCACCTGTTCGCACTGCGGCAACA 753346 36 100.0 37 .................................... GCCGCATCATCTCAGGCCACCAGATTGGCGAGGGTAG 753273 36 100.0 36 .................................... GACGTCGCGGCCTGCTTGGGCGCTATCATGAATGCG 753201 36 100.0 41 .................................... TCTGCAAGTACATGCCACACCACGCCGAGATCGGCGGAACC 753124 36 100.0 35 .................................... GAGGGTGAGAAGATCGCCAAGGCTTAGGTAGCCGC 753053 36 100.0 35 .................................... CCACATGGTCCATGCCGCGCAGTGCGCGCGAGACG 752982 36 100.0 35 .................................... ACGTTCGGGGGCTCCCGTATGCCATTTGCGTGCCA 752911 36 100.0 38 .................................... AATTCAAACCGGCAAGTCCGAAAATCCTGAACGTGTAT 752837 36 100.0 36 .................................... TTCAGCAAGTTCGCGAACAAGGGCATTCCTTTCATG 752765 36 100.0 34 .................................... ATGTGGCTGGGAAGTAAAGGCCTGAAGATCCTTA 752695 36 100.0 36 .................................... AAGGAAATCGCAGAAGAAACCGGCACCGGCATCGAA 752623 36 100.0 35 .................................... TGCTGATGACAGTAGGTAAGATTCACCCGCATTCC 752552 36 100.0 34 .................................... AGCGGCAGCACCACCAACAAGAGCAGCGCCGAAC 752482 36 100.0 36 .................................... CGCGACGTCGTCGAATGGGGCAGCGCGGCGCAGCGT 752410 36 100.0 38 .................................... CTGGCGCAGACCGGCAAGGACGCCGAGAAACATTTCAA 752336 36 100.0 35 .................................... AAGGACTAGGCATGAAGGACGTGCTTGACCCTCAG 752265 36 100.0 39 .................................... TGATCGGCACATGCCCACACTGCGCACGCCAGTTGCAAG 752190 36 100.0 35 .................................... GTGAAATATGTGTGGCGACATTACGTCACCCGCGA 752119 36 100.0 37 .................................... ACGCCGGAACAGTTCATGAAAGACAATGGCATCTCTC 752046 36 100.0 38 .................................... CGGCCCGTCTTCAATGACACCGTGCGGACAGGGATCTA 751972 36 94.4 35 ........................A..........C AAACTGCATACCAGCTGCATATGAAGTGCGTATAG 751901 36 80.6 103 ....T..GA..A.....T.....CT........... ACGTATTTCCTGTTCATGGGCACCCTGAACTAGATGTTTCTGAACGGCAATGCTCAGGTTTTCTGGGACCGACCGGCGTGCAGATTGCGTGCGTCGTGGTCAA 751762 36 83.3 0 ...........T.GT........CT.........A. | C [751760] ========== ====== ====== ====== ==================================== ======================================================================================================= ================== 55 36 99.2 37 ATTCCTGAGCAGTAATGCTCAGGACTTCATTGAGGA # Left flank : CGCTTATGATATCAACGATGATCGCCGGCGTAGTCATGTGGCAAAAATACTGCAACGCTGCGGTGAACGATTGCAATACAGTGTGTTTTTGCTAAGAGTGCGTCCATCAAAGATGCTTCAGATTCAGAATCTGCTTGAGTGTGAAATTGATGGATCCTGTGATTCCGTGGTTGTTTGTTTCCTTGGGAAAGAGGAACAAGCGAAAGATGGGATGAACTTTCTTGGCAGGCGTGGGTATAACGATTTGGATATTCCTACTGTCATTTAGCGGTTTTATCACATATGGAAATGTTGTTTGAAAACTAAAGAGTGTGTCATGCTGATTCTTGATATGCGAGAGCTGAATCGGTGGAAATGTAAAGTGGTAGCGCTCGCACCATATAGGATAACGACTCATATGTGTTTGCATCGTAAATGATGGTTGTTCAAGTGTGTGACTACAGCGAGTTCTCGCAAACCTCTTGATTGAGCTAATCGATAGGCTGAGTTAGAATGAGGCC # Right flank : CGAGGCCACAGTTGATGAGGATGCTTCACATTCGGATTCAGTGGGCTCGTCATGCTGTGCTAGCACTGGATGCATCCCATAAATTGGAGTGCCTCATCCAGTTGAGCGGTTAAATCTCCGTCCAGCTCAGCAAAGAGACAAACCTCGATAAAGGCTGCAGGGCGATTAACGCGGCGTACTCTTCGTGGAGTGCATCAATGCGGCAGACAGGCATTTTCATGCCTCGAGGTTGTTCATTTAACCAATTCAGCCAGAATTACACAAACGCAGAGCTCACCCATGCCTCGTCTTGAAACACTCTTCGTCACCATTAATACCTAGAAAAGGAAATGGTCGGGATATGGAACCCGATCCAGACAAATACCATTCCTCAACGAATAGGCTCATACGTGGCGTGGCGTAACCGCATCCTGCGGGCTGCGCTACACTGGGGTGCGGCTCGTCATCTCGATGAGAGGACGAGCACGGTGATGGCGAGTATGAGCATAGTCGCATGCGTC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCAGTAATGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 67985-67696 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZDM010000001.1 Bifidobacterium dentium strain 679B Contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================= ================== 67984 24 100.0 29 ........................ GTTCAAACCCTTCCCAGCGTCCCAATCCA 67931 24 83.3 29 ........T....AG....C.... ATTCAAACCCTATTCAGCGTCCCAAAACC 67878 24 100.0 29 ........................ ACCTAAACGCACCTCAAAGGGATAAAACC 67825 24 83.3 29 .............AG...T.C... GCTGAAACCCCATTCAGCATCCCAATCCA 67772 24 100.0 29 ........................ TATTGAAGCTCTTCTGGAGTCCTGATTCG 67719 24 83.3 0 C............AG....C.... | ========== ====== ====== ====== ======================== ============================= ================== 6 24 91.6 29 TCCAGCCACTGGAGAAATCATCCC # Left flank : CCGCGGACACCCAGGAGGACTGGCAGTCCGAGGCCGCGGAAAGCACGGAAGAGACCACCGACAACGACGCTGTTGCCGAGTCCGCCGAAGATGACGACGATCTTGACATCCCGATGGACCGCGTCGAAGCGGTGCTGAACGCCACCGTCGACAAGGACTCACTGACTCCTCAGATGCAGCGCATGATGAATCGTCAGGCTGAGAACACCCGCCGTGTCGAAGAGACCATCAAGGGCACCAAGTCCAACCCGCGTTGGTTCGTGCCACTGTTCTGCGCACTGATGATCATCGGTCTGATCTGGGCCGTGACCTACTACCTGAGCGGTAGTTATCCGATTCCGAACATCGGCGCATGGAATCTGGCCATCGCCGTTGCCATTATCATGGTCGGATTCCTTATGACCATGTGGTGGCGCTGATCATATCCGCCACGAGAGGGCGTCTGGGCGAGTCCAGACGCCCTTTTGTTATGTCCGGTCACCCTTAGCCGTCCCAAAACC # Right flank : ACTACGCGATCACACCTTAACGGTACGTAGCAGAATATGCCCACCGCCTTGGATGGTGGTGCCGAACAAGTAGGTATCGCCTCCATCGGCAAGCTTGAGCTTCTTACGCAACTGCGGCGCTGTGAGCGGAAAATTGCGTACGGCGACATTCGCCCTCCCGACCCCGCTCAGCAACCTCCTCACATCCTTCTTGCCCATGCCTCCAACCGCTTCGATGGCAAACCCGCGCCCTGGAAAATCCGTCACGGGCTCAGCGGCCACAAACAGGTGACTATTCGGTCCAATCTGCGTCACACCATACCGTTCCTCCAGCAGGTCGAAACAGCCGGCTTTCATAATCGATGCATTCGGCTCATACAGATATTCCATCTCCGGCAACGGCGCCGTGCCGATGTGCAACCCACGCGCATACACCGCAGAATCGTAATCAATCCGCTGACCGTCGTTCACGCAATACACATGTGGCGCACGTACGTCATCCGTCGGATGCCTCGTTTCCA # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCACTGGAGAAATCATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //