Array 1 3169124-3168319 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJFE02000002.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain FDAARGOS_318 unitig_0_quiver_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3169123 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3169062 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3169001 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3168940 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3168879 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3168817 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3168714 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3168653 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3168592 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3168531 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3168470 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3168409 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3168348 29 96.6 0 A............................ | A [3168321] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3187726-3185256 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJFE02000002.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain FDAARGOS_318 unitig_0_quiver_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3187725 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 3187664 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3187603 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 3187542 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 3187481 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 3187420 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 3187359 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 3187298 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3187237 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 3187176 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 3187115 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3187054 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3186993 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3186932 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3186871 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3186810 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3186749 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3186688 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3186627 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3186566 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3186505 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3186444 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3186383 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3186322 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3186261 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3186199 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3186138 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3186077 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3186016 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3185955 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3185894 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3185833 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3185771 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3185710 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3185649 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3185588 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3185527 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3185466 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3185405 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3185344 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3185283 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 41 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //