Array 1 8869-6560 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAELTK010000095.1 Delftia sp. ASV31 NODE_95_length_20977_cov_13.206619, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8868 28 100.0 32 ............................ TGACCGACGAAGAACTGGACGGCGCTATCGAT 8808 28 100.0 32 ............................ CAGGTGATGCTCCGCGCCGAGAACCCCACATA 8748 28 100.0 32 ............................ AATGGCCTTGGTGTCGAGGACCGGCTAATTGA 8688 28 100.0 32 ............................ TTTCCTTCAGTCGACAGTTGCGGCGGACTCTT 8628 28 100.0 32 ............................ AGTTCATCGATGCACGCATAGCCCTGGCAAAC 8568 28 100.0 32 ............................ TGAAGCCCGAGCAGGTCCTGGACATCGCCCGG 8508 28 100.0 32 ............................ AGTTCAATGCGCGGCCTGCTCATGGCTGCACC 8448 28 100.0 32 ............................ TGGAGTCGCCGGCGGCAAACGGCACGCCAAGC 8388 28 100.0 32 ............................ AACCAGGGCATGGACATCGCCCGCCTCGTTGT 8328 28 100.0 33 ............................ TTGCGGCAGAGGTGCGGCGGCTGCGCGGCCTAT 8267 28 100.0 32 ............................ ATGCCCAATCGAAGCGCGAGAACCAGTTCCTC 8207 28 100.0 32 ............................ GGATGTTGATGGGCAACTGGATATGCCCAGCA 8147 28 100.0 32 ............................ AGCGATGAAAGGACAGACCCCGTGACCACAGC 8087 28 100.0 32 ............................ TGGGTCTGCCCACCTCGCCCACGAAGTCCATC 8027 28 100.0 32 ............................ TGTTTGACTTCAGTGTGAATGCTGGCCCAGGC 7967 28 100.0 32 ............................ AGTGGTGAAAGTTGACCACATCGCTCCCGTCG 7907 28 100.0 32 ............................ GACAAGGCGGCCGCTACTCCAAGGCCCGCAGA 7847 28 100.0 32 ............................ TGCTGCCCGATGGCGCCGGCCTCGCCATGCAC 7787 28 100.0 32 ............................ ATTGCAGACTGGCCGGTGACGGACATGCTCAT 7727 28 96.4 32 .....................A...... GTGGAGAACATGCCGGCCGTGATGACGCCGGA 7667 28 100.0 32 ............................ AAGTACGAGGCCCTGCGCGCGGAGATGCCTGG 7607 28 100.0 32 ............................ ACACGGGGAAGCTCAAAGGATCGGTGCGCCGG 7547 28 100.0 32 ............................ TTTCTCGGCTGCCGGCGCCAGTTCATCGGGAA 7487 28 100.0 32 ............................ CAGCGGTTTTCGGCCAACGTTGCTTATCATTT 7427 28 100.0 32 ............................ GAAGCGCGACAGCGGCGCATAGCCATGGCTGG 7367 28 100.0 32 ............................ ACTTCGGGGGCACGCCATGGCTCTGATCCAGC 7307 28 100.0 32 ............................ AGGCTGTGCAGGAAATGGGGCAGGCAAAGAGC 7247 28 100.0 32 ............................ AAGACCAAGAATCAGGCGCGGCCACAGCCGCG 7187 28 96.4 32 .............C.............. CAGACCGAGCAGACGTGGCGCTTGTACCTGTC 7127 28 100.0 32 ............................ GTAGACGGGTACCCGTACTGTGTGCGTCTCTT 7067 28 100.0 32 ............................ AGGTGAAGGCCTCATCAATACGGTTGCCGATG 7007 28 100.0 32 ............................ GAGACCCCCAGCAGCTCTACAACCTGCTGGAG 6947 28 100.0 32 ............................ AGTAGCATGGGCATGGGCATCGTTGCGCATAT 6887 28 100.0 32 ............................ TGGCTGTCCGATACGCCCGACGACAACGGCTA 6827 28 100.0 32 ............................ ATGACCCCGACCCCACCCCAGTGCCAGCAGCT 6767 28 100.0 32 ............................ TGAAGCCCGCATGAATAAAGGCTTTGCTCCCG 6707 28 96.4 32 .........T.................. CCCTTGGCTGCTGCCTGGGCTGCGCGCTCTGC 6647 28 100.0 32 ............................ TGGCAGCAGCGCCCCAGACACCTGCTGCGCCC 6587 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.6 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : CCGCGCTGCGCGGCCTGATGGAACAGCCCTGGCTGCAGGGCATGCGCGATCACGTGCACTGCACGCCGCCAGCTTTGGTGCCAGAGGGCGCCGTGCCCTACCTGGTGCAACGCCGGCAATTCAAGACCAGCCCCGACCGCCTGCGCCGCCGCCGCATGCGGCGCAAGGGAGAAACCGCTGAACAGGCTGCGGCCGCCATCCCCGACAGCGTGGAGCGCACCCCGGACCTGCCCTACGTTCAACTGCGCAGCGCCAGCACCGGCCAGCCGTTTTGCCTGTTCGTGGAGCAGAAAGCGGTGCAGGGCACGGCGGGCCAGGAAGGCTTCAACACCTACGGGCTGAGCCTGGGAACTGCTGTTCCCTGGTTCTGACCCTTTTTCTGGCGGCCTGAAGACTGCCTTGTAAATCAACAGCTTGGCGGATGCCCCGGAATTTGGGGTGTTCGCCAGCTGGAGGTGAAAGCTCTTTCAAAATCAATGGATTGGGGAATTTTTTGCCTA # Right flank : GCACGCACCCCCTCTCTTGGCTAGCCAGAGGCAGTAGCGCGACTACGCGGTGCCCAATGCGATCCGGTTAAAGGCCGTGACGGCAATGAGCGAACAGACCGGCGCTCTCACGGAGCCTGCTGGTGCCACGCTGCAGCAGGGCGCCGCGCCTACTTCACCCGGCTTTCCTCCACGTGCTCCACGAAGGAGGGCGCTTCATTGAAAAGTTGCACGAGCTGCGCCAGGCGCAGGCCATAGGCGCATTGGGGGCGGCTGAACGCCTGGGCGGCCAGGACGATGGCGGCGCGGGCGAGGAACCATGCGTTGTCGAACTTCCATGCCGCGTCGAAGTGGGTGAGCTTCATCTGCCGGATGTGGTTCAGGGCCAGTTCCGTGGCCATGTCCACGTCGGCGTCCTCGTCAACCCAGTCCATGTCGGCGCAGCGCTTGTCGATCAGGGCGGCCAGCTCGGTTTCTGCGCGGTCTATGGACAGGGCAATCATCTGCTGCATGCTGGGCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 55552-51443 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAELTK010000017.1 Delftia sp. ASV31 NODE_17_length_83601_cov_16.188607, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 55551 32 96.9 31 C............................... TTGCGGGGGTGCTGTGAATGCGGGCATCCCA 55488 32 100.0 33 ................................ CTGGCATCGGGCGACAGCCCGCGACAGCAGGCG 55423 32 96.9 33 C............................... CTTGAACTCATCACGGGACGACTGCGCCCGGGT 55358 32 96.9 33 C............................... AACACCGGCCTGCGGCCGGGCGAGCTCCAGGCG 55293 32 100.0 34 ................................ AAGGCTCAACAGGCCCGTGACGCTGGGCAGTCGT 55227 32 100.0 33 ................................ AGCGGCACGCTCGCCCTTGAAGTACATCGTCAC 55162 32 100.0 36 ................................ GAGTGCTCGACTACTACGAGCAGGTGGGCCAGCCGT 55094 32 100.0 34 ................................ CGCTGGGCATGCCAAGAAACGCCTCGCAAGCCTG 55028 32 100.0 34 ................................ AAGGACTCGTTCGATTGGACAACCCTGCCGCTGG 54962 32 100.0 34 ................................ GTTGTGTGTTTGGGTATCGCAGTGATGCGCCCCC 54896 32 100.0 35 ................................ ACTCCAGCCACGGCGCCCTGCACCAGACCAGGCGC 54829 32 100.0 34 ................................ CAGAAGGATGCCAGTGGCAACTTCATGCAGGGCT 54763 32 100.0 34 ................................ TACCATCCCGTACTGGCTGCAGCCGTACTACCAG 54697 32 100.0 33 ................................ GTCTTCGTCAGAACGTCCATCCCCTGCCACCAC 54632 32 100.0 34 ................................ AAGATCCGCAACCTGATCCGCGACAGCCTCTCGG 54566 32 100.0 34 ................................ CGCGAGAACTGGGGGCGGACCATGGCGCAAGGCA 54500 32 100.0 35 ................................ GAGGCCCCTGCCCACGGGGTTCTGCGGATGCTGTG 54433 32 100.0 36 ................................ AGGGTCTGGCCGTTGGTGAGCTGGGCCGGGCCGATC 54365 32 100.0 33 ................................ GCTCACCGAGGTGTCGCTGCGCTCGCCACCCTT 54300 32 100.0 35 ................................ CAAGTCACCACTCGCGTAATGGGCGTTGCCGCAAG 54233 32 96.9 34 .C.............................. GGTGGCCCCATCGTAAAAGGCATCCTCGCCAATT 54167 32 100.0 35 ................................ GTTGACATTGGTAAACCAGTCTTTGCTTGCACCCA 54100 32 100.0 34 ................................ TCGCAGCGCAGCGACCTGCTCTTGCGTCCTCCTG 54034 32 100.0 34 ................................ TGACTCCCGCATTATGGGCATCACACCGGACAGT 53968 32 100.0 34 ................................ ACCCAGACACGCGGCCCCTAGCGCTCCAGGCATC 53902 32 100.0 35 ................................ ATCCAGTAGGCGCCGATACCTGCGCCCCGGTGGAA 53835 32 100.0 33 ................................ TCGGACAGTTGGCCAATCGTCAAATCCAGCCTT 53770 32 100.0 33 ................................ GCGACGGCGGCATCGAGCGCATGAAGGGAGAGC 53705 32 100.0 35 ................................ TCTGCGCCCGGCTGCAGTCTCCTCTTCGCCGTTCT 53638 32 100.0 30 ................................ ATCCAGGCGCTCGACACTCATCGGCAGCGG 53576 32 100.0 34 ................................ TGGCCCGTGCGCGAGAAGCTGTTCCTGGAGCACA 53510 32 100.0 33 ................................ GTTTCCAGCGGCACAGCCCGCAACGTCCACTTA 53445 32 100.0 34 ................................ CCCTTGGCTGCTGCCTGGGCTGCGGCGATGGATG 53379 32 100.0 34 ................................ CCGGTATCAGCCTCGCGCCCGACCACCGCCAGGC 53313 32 100.0 35 ................................ TTGCTGACCATGAGGAAGTACTCATTGATCAGGCG 53246 32 100.0 36 ................................ AAGCCTGGTATTGGCATGATTGGCCCGCTTGGCGAG 53178 32 100.0 34 ................................ TGCTTGCTCATATCGATGTCCTCTCAATGGTTCG 53112 32 100.0 35 ................................ AGGTCATCGAACACCATGCCGGTGACATTGATGTC 53045 32 100.0 35 ................................ GCGTGCGGGGAAGCGTAGAGCACTGTCGCTCGTAC 52978 32 100.0 36 ................................ TATTTTCTGTTCGGCGTGGATGTAGCAACCGCGCAA 52910 32 100.0 34 ................................ CAATGGGCAGGGAGCGCGCATTGGCCAGCGAGCA 52844 32 100.0 35 ................................ AGAATCTGGCTGGCTTGAGATGGCATCGCCTTAAC 52777 32 100.0 36 ................................ TGCGACACCGGCAACGAGCACCAGGCCGTCTATGAC 52709 32 100.0 33 ................................ AGTCCTCTTGAGTTGGGTTTCCGTCGGTATTTC 52644 32 100.0 34 ................................ ACGCTGGACCGCGTGGAAGTGCTCCTGGTCGGCT 52578 32 100.0 34 ................................ ATCGAGACGGAGCTGGAATTCAGCGAAGACGAGC 52512 32 100.0 38 ................................ GTCGCGCCCAGGGACGGGCTCAGGTTCTCGGTGCTGGC 52442 32 100.0 34 ................................ TTCTTGCGCTCCGCTTCAGCCTCCTGCTTGGCGC 52376 32 100.0 33 ................................ AGGTCATAAGGCTTGCCCGAGGCCTTTGCGTTG 52311 32 100.0 34 ................................ GACGCATCCCAGTCGCCAATCCTGGGGGCTGGCC 52245 32 100.0 33 ................................ AAGTTCATCCGCAAGGGGTTGTAATGCAACTGA 52180 32 100.0 33 ................................ GTTATCTGGCTGATGAGATGGCCGGGCTGCGCT 52115 32 100.0 34 ................................ GTCAACCCCGACAAAGACCCAACACCCGGGCAAT 52049 32 100.0 34 ................................ TCGCTCCTGCCGAAGGCTGTCCTATCGACCTATC 51983 32 100.0 34 ................................ ACGACCATGTACGGTTGGGCGTTCGCCAACCTGA 51917 32 100.0 34 ................................ CTTTCACAAGGCTCGGCTCATGATTAACGCGCTG 51851 32 100.0 34 ................................ TGGAGCTGGTCCAGAGCGCTGTCTTTGATCTCCG 51785 32 100.0 36 ................................ CATGTTGGTGACGGGGGTAATGATGGCAACACCTGA 51717 32 100.0 33 ................................ GCCGCATCGCTGACGAGGCGACGGGCAAAAAAA 51652 32 100.0 35 ................................ AACTCTGTGTTCTTCACGGACCACAAGAAGAACAC 51585 32 100.0 9 ................................ ATGACGTGG Deletion [51545] 51544 32 81.2 34 CCT....G.T.C.................... TCGGAGGCCAGGTCCAGGGCCTGCATTTCGAGTT ACGA [51529] 51474 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 63 32 99.5 34 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : CCGGGCGATGAAAAATGAGGTGCGCCGATGATGGTCCTGGTGAGCTATGACGTCCGCACCCAGGACCCGGATGGTGCCCGCCGCCTGCGGCGCATCGCCAAGGCCTGCCGGGACTTCGGCCAGCGCGCGCAATACTCCGTCTTCGAAATAGAAGTGGACGCCGCGCAATGGGTCGCCCTCAAGGCGCGGCTGATGCAAATCATCGACCCTGCCCAGGACAGCCTCAGGTTCTACTACCTGGGCCAACACTGGCGCAGCAAGGTCGAACACATCGGCGCAAAGCCCGTGCTGGACCTCGACGCCCCCCTCGTCTTCTGAGCCTCCGCGCGAACCCCAAGTGACCGCCGCCTGCCCTTGAGGTTCGCGGCCGCGCAAGCTGTTGTTTTCAAAAGGGCGTGGGCGAGCGAATGGCTGAACGCCGATCCCGCAGCATGACAGTGCGGCCTGGTTCGCGGAAGCCTGGCTTTTTTCATAGCGGTGAAATTGCTCTATAAGTACCC # Right flank : CCCTGCCACCACAGCAAGCACCACATGCATTTGGAAAAAATCGCCTGACTCATTCCTCGCCGCGCAGGCCGCCATTGAGAGAGAGTCCAGCCACTGCCTGCAGCAGGTACCCGCGTGCCTCATCTATCGAGGGACCTGCATGCCCATCGATCCGCCGAATATAGGGAGATGTCAGCACAGCCATGGCCTGACCATCGGGCCCGAGGATGGGACAGGAGATGTCCACCACACCATAGGACTGCAGGCTTTCGCTCTGCTTGTGGCCTTTGCTGCGTATCTGTTCCAGCATGTCGTGCATCTGCGCCTCGGGCAGTGGCACCTCGCCTTCCAAAGGCGTGTGCTCGGCCAGCATCTGCGCGCGGCGTTCGGGTGTCTGGCAGGCCAGCAGCACATGGCCTGACCCGGTGTCCAGCAGCCCGACGCGTGCGCCCAGCCTGATTGACAGGCCCCAGTTCCCGGGGCCCGGGACCTGGGCCACGATCAGGACATTGCCACGGTCA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //