Array 1 299-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSGE01000091.1 Escherichia coli strain TzEc075 NODE_91_length_303_cov_9.65341, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 298 29 69.0 20 ..A....TT.TAAA.A.A........... AACTAGTTAAAGTTTTTATT 249 29 89.7 32 ........T..AT................ GACTTGTTATCATTTTTTAAGTTGTCGAACTT 188 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 127 29 96.6 32 G............................ CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 66 29 89.7 0 GA..........................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 89.0 29 ATGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGTT # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATAT # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41020-39893 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSGE01000005.1 Escherichia coli strain TzEc075 NODE_5_length_218668_cov_16.8617, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41019 29 100.0 32 ............................. GAGAGAGTCCAGTATCAATCCCGCAATCCGCA 40958 29 100.0 32 ............................. CGTACAGTATAACCTCATCCGGGAGCGTCTCA 40897 29 100.0 32 ............................. CCACCCTCAGATCGCCCTTGTACATCATGTAC 40836 29 100.0 32 ............................. CGCACCGGCTGAGCCAGCAACAACAGAAACCG 40775 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 40714 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 40653 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 40592 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 40531 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 40470 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 40409 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 40348 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 40287 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 40226 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 40165 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 40104 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 40043 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39982 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39921 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 68154-66722 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSGE01000005.1 Escherichia coli strain TzEc075 NODE_5_length_218668_cov_16.8617, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68153 29 100.0 32 ............................. CCAGCGACCGCGACATCTCTCTATATCTCCAG 68092 29 100.0 32 ............................. CTCCCGTTTTTGGGTACATTCGTTTTTGATAT 68031 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 67970 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 67909 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 67848 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 67787 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 67726 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 67665 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 67604 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 67543 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 67482 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 67421 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 67360 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 67299 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 67238 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 67177 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 67116 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 67055 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 66994 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 66933 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 66872 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 66811 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 66750 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTATCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //