Array 1 429142-430449 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOV01000002.1 Salmonella enterica subsp. enterica serovar Newport strain 149 NODE_2_length_692446_cov_19.5335, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 429142 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 429203 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 429264 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 429325 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 429386 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 429447 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 429508 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 429569 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 429630 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 429691 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 429752 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 429813 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 429874 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 429935 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 429996 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 430057 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 430118 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 430179 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 430240 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 430301 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 430362 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 430422 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 447119-448795 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOV01000002.1 Salmonella enterica subsp. enterica serovar Newport strain 149 NODE_2_length_692446_cov_19.5335, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 447119 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 447180 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 447241 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 447302 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 447363 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 447424 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 447485 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 447546 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 447607 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 447668 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 447729 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 447790 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 447851 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 447912 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 447973 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 448034 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 448095 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 448156 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 448217 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 448278 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 448339 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 448400 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 448461 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 448522 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 448583 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 448644 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 448705 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 448766 29 100.0 0 ............................. | A [448793] ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //