Array 1 34378-32457 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKA01000002.1 Salmonella sp. S117-49695 NODE_2_length_354544_cov_131.92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34377 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 34316 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 34255 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 34194 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 34133 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 34072 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 34011 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 33950 29 100.0 32 ............................. GTGGGATGGAAAAAATGGGAGCCAGTTTTAAA 33889 29 100.0 32 ............................. TATGCCACGAAAGCGGCGCGTTTCTAGCGGAG 33828 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 33767 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 33706 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 33645 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 33584 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 33523 29 100.0 32 ............................. CGCGCCACCGAGCTATTCGGGCCGCTCGGTTC 33462 29 100.0 32 ............................. GGATTTTATGACGACTGGCCGAAATCGTACAA 33401 29 100.0 32 ............................. AAAAAATACTCTCCAAAATGAGTCAGTCCGAG 33340 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 33279 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 33218 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 33157 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 33096 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 33035 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 32974 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 32913 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 32852 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 32791 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 32730 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 32669 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 32608 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 32547 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 32486 29 93.1 0 A...........T................ | A [32459] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 52420-50989 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKA01000002.1 Salmonella sp. S117-49695 NODE_2_length_354544_cov_131.92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52419 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 52358 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 52297 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 52236 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 52175 29 100.0 32 ............................. GCAGTAACGGGAAATCCAGTGGCGGCAGTATT 52114 29 100.0 32 ............................. GCCACCGGTGCGGCATACAGTGGGATCAATAT 52053 29 100.0 32 ............................. ACAAGGATATTCTCGTCTACGTTATCCAGTTC 51992 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 51931 29 100.0 32 ............................. ATTGCGGCAGAGGGTGTCAACACAGAGGGCGT 51870 29 100.0 32 ............................. AGCCGTGAAACGCTAATCGCGCTATTGAGCGA 51809 29 100.0 32 ............................. TGTCCACCGGCACGACCTATTCCAACAGCGCC 51748 29 100.0 32 ............................. CTCCAGTATTTAAAAAGCTGCTGATCGCGATC 51687 29 100.0 32 ............................. GAGATCGACCTCTCCCATGTTGTGCCGGTTAC 51626 29 100.0 32 ............................. CTGTTTAGTAGCGAGATAGTCAAACGGGAGTA 51565 29 100.0 32 ............................. TTTGTCAGCTCGTTATGTGGGGTATAGCGATA 51504 29 100.0 32 ............................. CGCATCGCGTCAGTGCGTCTGGGTGACGTTCC 51443 29 100.0 32 ............................. CCGGATCAAACATTGCTCCAGATTGCCACTGA 51382 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 51321 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 51260 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 51199 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 51138 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 51077 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 51016 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //