Array 1 349428-350920 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRWU010000002.1 Salmonella enterica strain 501 NODE_2_length_475366_cov_171.914524, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 349428 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 349489 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 349550 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 349611 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 349672 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 349733 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 349794 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 349855 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 349916 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 349977 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 350038 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 350099 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 350160 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 350221 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 350282 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 350343 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 350405 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 350466 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 350527 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 350588 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 350649 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 350710 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 350771 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 350832 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 350893 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 367052-368955 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRWU010000002.1 Salmonella enterica strain 501 NODE_2_length_475366_cov_171.914524, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 367052 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 367113 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 367174 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 367235 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 367296 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 367357 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 367418 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 367480 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 367541 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 367602 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 367663 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 367724 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 367785 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 367846 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 367907 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 367968 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 368029 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 368090 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 368151 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 368212 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 368274 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 368377 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 368438 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 368499 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 368560 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 368621 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 368682 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 368743 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 368804 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 368865 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 368926 29 96.6 0 A............................ | A [368952] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //