Array 1 165295-163374 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVV01000006.1 Salmonella enterica subsp. enterica serovar Kentucky strain BCW_2895 NODE_6_length_237560_cov_4.96022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 165294 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 165233 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 165172 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 165111 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 165050 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 164989 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 164928 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 164867 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 164806 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 164745 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 164684 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 164623 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 164562 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 164501 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 164440 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 164379 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 164318 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 164257 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 164196 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 164135 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 164074 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 164013 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 163952 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 163891 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 163830 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 163769 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 163708 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 163647 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 163586 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 163525 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 163464 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 163403 29 100.0 0 ............................. | A [163376] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 185030-182927 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVV01000006.1 Salmonella enterica subsp. enterica serovar Kentucky strain BCW_2895 NODE_6_length_237560_cov_4.96022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 185029 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 184968 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 184907 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 184846 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 184784 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 184723 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 184662 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 184601 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 184540 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 184479 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 184418 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 184357 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 184296 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 184235 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 184174 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 184113 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 184052 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 183991 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 183930 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 183869 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 183808 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 183747 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 183686 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 183625 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 183564 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 183503 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 183442 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 183381 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 183320 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 183259 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 183198 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 183137 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 183076 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 183015 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 182954 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //