Array 1 93731-91869 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPI010000022.1 Actinomadura latina strain ATCC BAA-277 W7474_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 93730 29 100.0 32 ............................. TCGCTTTCGGGACACGGCGGGGTGGTGGTGCC 93669 29 96.6 32 ............................A CTGGTCCGGGGCAGCTTGACGCCCAGATGCTC 93608 29 96.6 32 ............................G TCGGTGATCGCTGCGGCCTCCCCGGACGTGAG 93547 29 100.0 32 ............................. ACCTCGCGGCGGGTGCGGCGGGCGCTGGAGGA 93486 29 100.0 32 ............................. TCGCCGCGCGCCTACAGCAGGCCGAGCGGCAG 93425 29 100.0 32 ............................. GCCGCCGCCGGCGACGTCCGGCACAGCGCCTG 93364 29 100.0 32 ............................. TCACCTGGGACGGGACCTAGATGTCCGACGAT 93303 29 100.0 32 ............................. GGTGGTGGGGCGCGAGGGTCGTCGAGGCCAAC 93242 29 100.0 32 ............................. TGGTTGTAGTCGGTGAACCATGCCTGGGATGC 93181 29 100.0 32 ............................. CCGCCGCCGTCGGCGCGGTCCTGGCCGCCGTG 93120 29 100.0 32 ............................. CCGTCGTTCCCGTTCCGCACTCCACTGGAGTC 93059 29 96.6 32 ............................G CAGGTGCAGGCGGAAGGGTGGCCGCACCTGTA 92998 29 100.0 32 ............................. TCGCCGAGCCCCTCGGTGACCTCCTCAGATCC 92937 29 93.1 32 .........C..................T GCTGATCGATCCGGGGAGGGGTGTATCTCCTG 92876 29 96.6 32 ............................T CTGCGCCAGCGACAGCCCGGCACGCCGTAGCT 92815 29 100.0 33 ............................. AACGAGGTCGCCGACACCGACGGCGCCCACTCC 92753 29 96.6 32 ............................G ACGGTGCGGGGGCCTGGGGGCGGCTTTGTGTG 92692 29 96.6 32 .................A........... CGCGCGACGACCCGCGAGCCGACGCCCGGCGA 92631 29 96.6 32 ............................G ATCTCGCCGGCCGGTGAGACATCGTTGGTGAG 92570 29 100.0 32 ............................. CCGTGCCAGGCGGAATCGTTCCTGGCCACCCA 92509 29 100.0 32 ............................. TGGAGGCGGTCCGCACCACCGAAACCGACGTG 92448 29 96.6 32 ............................G CACCGGTTCGACATGACGATGGTGGAGGTGCA 92387 29 100.0 32 ............................. ATCGCGCACCACGGCGCACCCGGCATCCCCCA GG [92365] 92324 29 100.0 32 ............................. GCCTCACCGAGCCGCTACAGAGCTTGGACGCC 92263 29 96.6 32 ............................G GGGTGCCGTCAGACTGCCTACCGGGCGCGGCA 92202 29 100.0 32 ............................. CCGCGCCACCGGAAGACGGAGGAGTGATGGAC 92141 29 100.0 32 ............................. TGCACCGCCGGCACGACTGCACCCGCCACGTC 92080 29 96.6 32 ............................T CACGTGGATCGACGGCACCAAGTGACCCCGGT 92019 29 96.6 31 ............................A GCCCGTCACAGCCTCTTGCGGGATGATGGGG 91959 29 89.7 32 ..................A..C......G ACGATTCGGTTGAAGACCAACGCCGGCGGCGG 91898 29 79.3 0 ...................C.G...GGGG | C [91875] ========== ====== ====== ====== ============================= ================================= ================== 31 29 97.6 32 GTCGGCCCCGCGCCCGCGGGGATGGTTCC # Left flank : ACCGGTAGCGCAGAACCACGCGCTGATCCCACGCCAGCCCCGCACCCAGAACACGCGCGGCACCTGCAGCATCCATATGCTGGAACGCAGGAGTAGCCTTGCCGATATCGTGAACACCGCACACCCACGCAAACAGCCGCCTTCCCCCGCCTTCGCCGGCAACACCGTCCAACGCCCGACGGACCGACGGCGCCAGGTAATGATCCCAAACAAGTTCGGCCACCGCGGCAGTATCCAGAAGGTGCTGCACTAACAAATTTGCCTGGCCACCAGCTTTACCCGCGCTCTTGCCCCACAGCACCCCAAGCGGATCTTGCGTGTACGGGACTGGTCCTTCGATACTCACACCCGGGAAGGTAGCGAACCACACCGACAAAATAACGCTCATGACTGAAACACGGCGCGCAGTCAGATCATCACGGCTGTCAGGCATCACCATGATCACAAACCAACCGAATGGAAACCGGGTCTCTCCCTGCTAACGTCGCAGGTCAGCAAGG # Right flank : TATTGGAGGCATAGAAACGTCCGGCAGCCCGGTGCAGTGGCTAGCCGACCTAGGGGACGGTGAGTTGGGCCTTAGCGCGGACCATCGGACCTGACCTCTTGGCCGTGATGTGGCTGTGTGGTAGCTCCGCACCACGCCAGAAAATCTTCCCTTTTCAAAATCGTCAGCCTGATGCGCCGTCACCGCCGTCCGTGGGTAATACACCTAGCGGACAATGTTCGGGCGTGGCCTCATAAATAGGCTGAGGCGGCGTTTACGTTAATTGACTAAGATCGTCTACGCATACGCGAACGGATGCTGCTCTTCGGGGTTATTCAGCGTCGAGCAGGGCTAGAAGTGCCGCTGTGGGGACGCGGTAGCAGGAGCCGATGCGGATTACCTTGCAGGGGAACTGATCTTCTTTGGCGAGTTGGTAGGCATAGGTGCGGGAGAGGCCGAGGGCTCGGGCAGCGGTGACGATATCAACGACGGTGGGAAGTTCGGCGAGGTCTGCATACTTG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.87, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 808-3962 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPI010000049.1 Actinomadura latina strain ATCC BAA-277 W7474_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 808 29 96.6 32 ............................T GGGCCCTCATCGAATCCGACATGCACGACGTG 869 29 96.6 32 ............................G ACGACGCGCACGGCGGAAACAGGACGTACACC 930 29 100.0 32 ............................. CACTCATGAGGCTACCTGAGCCGTTCCACCCC 991 29 96.6 32 ............................G CAGCATCCGAGCCAGAGGCTCAGGGCCGCTGG 1052 29 96.6 32 ............................T GGTGTCGGTACCAGTGCCGACGGGAACGGGCT 1113 29 100.0 32 ............................. GCGCCGGGCGTGACACCCCGGGCCCCGGGGGA 1174 29 100.0 32 ............................. CGTGTTCCTGGCCGATCTCGCCCCGGACATCA 1235 29 96.6 32 ............................T CAACGGGACTGCACAGGCGTCCGGACTTTTCC 1296 29 96.6 32 ............................G GCGACCGCCTACCCGTCCGCGGCGGCCGGGAC 1357 29 100.0 32 ............................. CCGTACCGGTCCGCGTCGAGGTCGTAGCCGAT 1418 29 96.6 32 ............................T GTGGAACATGTGGAATACGTGGAACATGCCAG 1479 29 100.0 32 ............................. CCGAGCACGTGAAGGGGGCGACGTGGGCGACG 1540 29 96.6 32 ............................G TGCAGTCCAGCACCTTGATCCTGCGGGGCTCG 1601 29 96.6 32 ............................T TCGTCGGGGTGTTCGGCGGCCAGGCGGCGGCG 1662 29 100.0 32 ............................. CCTCAGCTCTGGTACGGCGGCAGTGCGGCGGA 1723 29 100.0 32 ............................. TCGGCGACCATCGCCACGGCGTCGGAGTCGGA 1784 29 100.0 32 ............................. TCCACGTAGTCGCCCACCTCCAGCCGGATCGT 1845 29 96.6 32 ............................G AGCGTCAGGAACGCGGTCGAGCGGACCCGGGC 1906 29 100.0 32 ............................. GGGGATGTGGAACACGGGCCGCGGGGCCGTCC 1967 29 100.0 32 ............................. TCGTTCTCGATGATGCCGTCGAGATCGAGCAC 2028 29 100.0 32 ............................. GTCGGCGCGCCGTCCGGGCTCTTCCCCGCTCC 2089 29 96.6 32 ............................G GACACGTCGTAGCCGAGGAGCGTCTCCCGCTT 2150 29 100.0 32 ............................. CCCCCATTGGCGACCGGCACAGCGGCGGTCTC 2211 29 100.0 32 ............................. TCGGCGCACATGTCGGCCTCCGACGGGATCGC 2272 29 96.6 32 ............................G CCGCCGCCGCCCTCGGGGGTCTCCTGCAACGA 2333 29 96.6 32 ............................T TCCGCGTGCAGTTCGCCGACGTCATCGCCCCG 2394 29 96.6 32 ............................G CGACGCAGTACCGAGGCGCCCACTGGGACCCC 2455 29 96.6 32 ............................G AGGGCTGGGGCAGCAGCGGCTACTACCCGCGT 2516 29 100.0 32 ............................. AGGTCGAGCTGGACGGGCTCACGCGGGGCGTG 2577 29 100.0 32 ............................. GGCAGCCGGTCTGGGACGAGACCGACATCCGC 2638 29 96.6 32 ............................T CCGCGGGGGACGGTGCCGCTGCCGGGGCGGAC 2699 29 100.0 32 ............................. CGCATGTCCTTGCGGTAGACGGACACGCGGGC 2760 29 96.6 32 ............................G TTCGGCGTCGAGTTCGGAGGGGTGATGTCGTT 2821 29 100.0 32 ............................. TGCCCTCACACCCGCCCACATGTCGGAGCGCG 2882 29 100.0 32 ............................. GGGCGGGCCGCGTCGGCCAGGACCGGCGCGGC 2943 29 100.0 47 ............................. GGCGGGGATGGTTCGGCGTTCGTGCGGGTCACGGCCACTGTCGCGGG 3019 29 96.6 32 ............................G CCGTCCACACGCTTGCCGACGGCGAGACGCTC 3080 29 96.6 32 ............................G CGCTGGGCGCGCGGCCGCATGGTCAAGTCCAC 3141 29 96.6 32 ............................G GCGTCGCCGCCATCACGGCGAGCCTCTTCGTC 3202 29 100.0 32 ............................. TACGAGGGCGAGTTCCGCAGTGACGGCGACGT 3263 29 89.7 32 ..........................GAG CGCTGGCCGTGCTGCGCAGCACCAGCGCCTGT 3324 29 100.0 32 ............................. TCTCCCCCCGCCCCCTCCCCTGACGCGGCCTG 3385 29 100.0 32 ............................. TGGATGATCTCCGCGTCCCCGTCGTGGGGTGC 3446 29 96.6 32 ............................G CTGCACAGCGACCGGTTCACTGCTGCGGCGGC 3507 29 93.1 32 ...C........................G TGTGGGGACCATTTTTGAGATGGGTTGCTTCC 3568 29 96.6 32 ............................T GCACATCATCGCGATCATCCCCGGCCCCGTCA 3629 29 96.6 32 ............................G CTGGGGTGGCGGTGCTCGGCGCCGTCGCGGAT 3690 29 96.6 32 ............................G TACGTCTCGACGGACTCGACGCTGTGACGTCC 3751 29 100.0 32 ............................. TCCTTGATGCGCGCGTCCCGGTCGGCGAGCTG 3812 29 96.6 32 ............................T ACGGCTGCCCCGGCACATGCCCCTTCGGGCGA 3873 29 100.0 32 ............................. CTGGCCCCTGGCTCATACTCCCCGCGCTCGAT 3934 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= =============================================== ================== 52 29 98.0 32 GTCGGCCCCGCGCACGCGGGGATGGTTCC # Left flank : GTGCCGCAACACCGCGCGCTGATCCCACGTCAGCCCTGCGCGCAGAACGCGGTCGGCGCCGGCAGCATCCATATGCTGGAACGCCGGCGTTGCCTTGCCGATATCGTGGATGCCGCACACCCACGCCAGCAACCTTCGGCCCCCGCTTCCACCGGCCACGCCATCCAAAGCCTGACGGACCGACGGCGCCAAGTAATGATCCCAAACAAGCTCAGCTACCGCAGCAGCATCCAGCAGGTGCTGCACCAGCAGATTGGCCTGCCCACCAGCTTTACCCGCGCTCTTACCCCACAGCACTCCAAGTGGATCTTGGGATTGCCGAACCGGCCTTTGGATGCCCACACACGGGAAGGTAGCGAATCACACCGACAAACGAGACTCATACTGTGAAACCACAGGCAATCCAATCCAGATCATCACGTCTCGGAGACCCCACCGTGATCACGAACCAACTGAATGAAAAGCGGCACCACCGCTGCTAACGTCGCAGGTCAGCAAGG # Right flank : GGTTTCCGACGCGTTGGCCCAGGCGCCCGCACGCCCCGCTCGACAACCCGGACGCCGTCACCACCCCGCCGGGCTCGTTGCGGGAGGCCAGGGCTGGCGACCGGGTGGCCGCCATGGCCGACCGGTTGCCTCAGCCCAAACCGGCCCAGCCGCGCACCTAGGACGGCCGTCCATCTGGTCCTGGTGGAGGATCTCAGCGAACATCTCCCGCAGGTGCAACACCGTCAACTCGCCCAGCAGCAGTCCACTCAGACGCGGGTCCAGGTAGAGGTGGAGGTGGTTGGCGTACCCGGCCACTGTCGAAGCCGCGCCCGGACGAACTGGCCGGTGTAGTTGTTCTTGTCGGTCCAGGTGATCGGTCCAGCGCGGATCGGCGGTATCCCCCAGGCGGCCGCACGGGATTAGCTGTAACCGGGGTCTTCCACACGGCCCGTCCGGGTTCGGACCTCCACAGAGCGGAGCGTCCGATGGGAATCCTGACCGCCGTGCTCGTGATCGTG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14589-13218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPI010000051.1 Actinomadura latina strain ATCC BAA-277 W7474_51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 14588 36 100.0 33 .................................... CTCGACCAGCGCTGCCGCGCCCTTTGGGTTGCT 14519 36 100.0 34 .................................... CGTACGCCTTGGCGGTGGGGGCGGGGGATCTTCA 14449 36 100.0 36 .................................... CAAACTTGAGACCCTCCTCCAAGCTTACGTGTGTCG 14377 36 100.0 37 .................................... CAGGCATCATTCCTGTCCGTCTCCCCTTTCTTGTGTG 14304 36 100.0 35 .................................... CCATCTACGATCTCGATGGTTTCGCGGGCGACTTA 14233 36 100.0 36 .................................... CTGTAGGAGATTCTCACCCAGAACAGGGCTTAAAAA 14161 36 100.0 33 .................................... CCCGTCAAGTGGCAGGCCGCCAAGGCCAGCCTT 14092 36 100.0 32 .................................... CGGTAGTCGGAGCGGCAGCCCATCATCGTGTA 14024 36 100.0 38 .................................... TGGTCGCGTGGGCAGGACGACGCCAACGCGCAGGTCGA 13950 36 100.0 32 .................................... TCCCAGTCGAAAGGTAGCACCACTAATGAACA 13882 36 100.0 33 .................................... TAACTCCTCTTGGGTCGGACGGAATGAAGTATG 13813 36 100.0 32 .................................... GGAACCGAGCCGGCACTGGACATTGACCCTGA 13745 36 100.0 36 .................................... CGGTGGGTCGCGTCGCGCAAGATGTCCGCCTTCTCC 13673 36 100.0 36 .................................... CCTTCGGCATGCTCGTGCACGCCGCGATCTGATGGT 13601 36 100.0 33 .................................... GGAATCCTGGCCCTTCGACTTGCGCGGCTTCGG 13532 36 100.0 33 .................................... TCCCACCCTCCTTAGAGGGTTCTTCATAGGGTA 13463 36 100.0 34 .................................... TCGGCGGGACCGGTGATGGTGTACTCGATGACAA 13393 36 100.0 35 .................................... CGAATCCTGTAGCCATCAACTCGCTTGCGACTTGA 13322 36 100.0 33 .................................... GCCACGGCGTCGTACAACGGGTGGTGCGCGGAA 13253 35 80.6 0 .........-.T..A....T..........C.C.C. | T [13239] ========== ====== ====== ====== ==================================== ====================================== ================== 20 36 99.0 34 GTCGCAGCGACCTACAAAACCGCATCGGATTGAAAC # Left flank : AGGAAGGCGCGCTGGACGATGCGGTCGCAGATGGTCGGCAGCCCCCGCGTCCGCAGCTTGCCGCCCCGCATCGACCGCACCGGCCGCAGCGGCTGGGCCCGGTACCTCTGCTCCCGCAGCAGCGTCGCCAGCGCCGTCAGCCTGGGGCCGACCTCACGGCCGAACACCTCCGCTGTGACCCCGTCCGCCCCGGCCATACCGCTGCCGGCCGCCACCCGCGACCACGCCGCCCACAGCACCCGGTCACTGGCCAACCGCTCCACGAGCCGGGTCGTCCGGCCGGTTTCCTCACGTGTCCTCATGCCAACAACCGATGGACGAACGCCCTCCCGGCCATTTAAAGAATTGTCAGGAGGTTGGCGCACACCCCCAAAACCCGCCCTGACCTGCGGAGACGATGCTCCGAAGATCATCTTCGAGGCCGCTTCAAGATCGCGCCCGAGGAGGTTGGCGCATGATCTTGCAAACCCGCAGGTCAGACCCCCATAATCTGAGGTACT # Right flank : CGCCTGCGCGCCCACTCTTCGACGGTACTTTGTGTGATCGCATAGTTCGGTGAATCCGAACCGGGCCGAATTCCTCCTCGTGCGCGGGCGAGATGCGTGGCGTGAACGAGTGGCATGCGAAGGTCGCACAGGTGGACTATGCGGAAGACTCGGCGACACTGTTATGGGCTGCCGAATCTTCGGGGCATTCTTATGGGGCAGACTTCGCTACCCGAGCGTTGTCGGATCAGGTGGAGATTAGGGGCGGGAACCGTTCGTAGGTGTTGTTGGCGGCGTCGTAGGTGTAGGCGGTCCAGCGGCCGTGGTCGGCGGAGGCGAGGCGTGCGCCGAGGGCTACGGTGATGGCGACCGGGCCGCTGAGGAAGATGGCGTGCCGGCCGGTGCGGGCGCCGTCCGGGAGTTGTGTTTCGAACCAGGTGCGGCAGATCTGCTCGGCGGTGGCCGTGAAGCTTTCGGTGTTCTCCGGCAGTTGACTTACCGGGCTGCTCAGGCAGAGCAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCGACCTACAAAACCGCATCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.40,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 5380-4747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPI010000120.1 Actinomadura latina strain ATCC BAA-277 W7474_120, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================= ================== 5379 29 96.6 32 ............................T GACGCGCGTCAGCACCGGCAGCGGCTACCGGG 5318 29 100.0 32 ............................. TGCGCCATCGTGCGCCGCACCTCGGCACAGGC 5257 29 100.0 32 ............................. CCTTCTGACGCGCGGCGCCGGCGCGGTGGCCG 5196 29 100.0 32 ............................. TCGATGCTGTACGGCGCCGCCTGGCGCGCGGC 5135 29 96.6 32 ............................G CCGTCGACCAGATCGCCGACGAGCACCGCGGC 5074 29 96.6 32 ............................G TGCACCGGTCCGCCGCCACAGTCGAGTACCTG 5013 29 100.0 32 ............................. AACGCCGTCACCGTCACCGCGCCCTCCTCGCC 4952 29 93.1 89 ...........................TG TCCGCCGTGCGGGCGTTGACCGTGTACGAGGTCTCGGCCCCGCGCCGGGATGGTCCGCGGTCCGGAGGTCCGCTCCATGACGGCGGCGG 4834 28 96.6 30 ....................-........ ACCCCCGGCCGACCGCCGCGACGACCCCGC 4776 29 96.6 0 ............................G | T [4750] ========== ====== ====== ====== ============================= ========================================================================================= ================== 10 29 97.6 38 CTCGGCCCCGCGCCCGCGGGGATGGTCCC # Left flank : ACCCGGCTCCCCATCGACGAGGACGTCAACCAACTCTGGGACGAACACGCCGGAGCAGTCTCCGGCGGCGTGAACTGGTCCGGAAGCGAAGACCTCATCCAACCAGGGATGGGCGACGAGCACCTCGCGATCATCGGCCCCGAATTCGAACCACCCAACGAAGCCACCACATGACAACCGTCATCGTCCTCATTGCCGCCCCCGAAGGACTCCGCGGCCACCTCACCCGCTGGATGATCGAAGTACATGCCGGAGTATTCGTAGGCAACCCCAGCCGCCGCATCCGCGACCGCATCTGGGACCTGCTCGCCACCCGCATCGGTGACGGCCAAGCCATCCTGGTCGAACCAGCCACCAACGAACAGGGCTGGTCCATCCGCACGGCAGGCAAGGATCGGTGGAAGCCCGTCGACTTCGACGGCCTCATCCTCTCCGCCCGCCGTCGAAACCAACTAAACGAAAACCCGCCCCCTTCAAGATAACGCTGCAGGTCAACAAGC # Right flank : CCTCCGCCTGCACGCCGGTCGGGTGCTCGGCCTCGGACCATCTCGGGCCGGACCGTGAAAGCACTTCTGGTGAAACGGGCTCAGGTGAGCCGGTCGCGGTTGGTGTTGGCTTCCATGCGTATGGCGTTGACGAACTCGTCGTCTTCGGGGGTGTCTTCCTGGTAGATGAGCCAGCAGCCACGGATGCCGTCGAGGATGTCTTCGAGGAGGTCGTGCGCGGGACGTTTGGGGTCGAGCGGTGTAATGCGGAGTTCTTTGAGCAGGGCGTTGCGGAGTCGTGGGTCATGGTGCTGGTCGGCGAGTTCCTCGGCTTGGGTGACGCGTTCGAGGAGCGTTTCGAGGTCGGGGATCTCGCCTTCGGCGACGGTCATGGCGCCGCGGATCAGGCCGGTTACCGCCTCGTATGGGCTGAGGCCGAGTTCGAGTTGTTGCAGCACGATGGTCGGGGTCTCGTGTGCGAGAGCCTCGATGTTGTCTGCCTCTTTGATGATTTGTGTTGG # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.50, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGGCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 246-632 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPI010000005.1 Actinomadura latina strain ATCC BAA-277 W7474_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 246 36 100.0 34 .................................... TCAATGTGTTCCGGACTCAGTCCCATTGTTTTCC 316 36 100.0 35 .................................... GCTGTCGCGAATGCCGATGGTCGGCGCTTCCGCGA 387 36 100.0 35 .................................... CATCATGGCGAGCACTTCCTGGACCGGAGGTGAAA 458 36 100.0 34 .................................... CTGGTGTCCCATGGTCACTCCCGACTTTGAGGAT 528 36 94.4 34 .........T...G...................... CTGTCGACCTTGTCCTTGCACCCGTTCGCGAAGT 598 35 86.1 0 .C.....-.......................A.T.G | ========== ====== ====== ====== ==================================== =================================== ================== 6 36 96.8 35 GTCGCAGCCCGCCACAAAACCGCATCGGATTGAAAC # Left flank : GTCACACAAAGCAACGATCACGGCGGCCGTCTCGTATGTCCGGCACTCCACCCGATCGTGATCATCCCCGGGCGCCCCGCCGACCAGCAGCATCATCCCCACAGCCACGATCTACAGCTGCCGTATCTGACCTGCAAGAACAGCGCTGTAGTGATCGTTAATGCCCCTCGTGACGGAGGTCTTGCGGAGAGGTTGGCGCATGATCTTGCAAACCCGCAGCTCAGAGGCACGTAATCAGAGGTACTG # Right flank : GGGACGTCGGTGAACGCCGGGCCTTGGATTCACTGACCGCCGAGGGGGGCGGTGGGAAGGGGTTGACGTGGACGGAGGGGGCCTCCGATACTGGTGAGCGTTCGACGGCTGCGGCCGAAGAGCGTTTCGAGGCCTTGTGCCTCCTGAGGAAGACCGGGTCTCCGGGTTTCACACCTGTGGGACGGACGGTCTGTTCGGACTACCTCAGGAGGCTTCGTGCGGCCCATCTCCCATTTGGTCGACCGTGATGACGCGATCGCGTTCGCGGCGTTCCACACGCTCGTTTCTCCGGCGTTGCGCGTCGCTGCGCGCGGACCGCTGGATCGGGCCAGGCACGCCGGTCGGGTTTGTAGCGCGCCGGCTGGTCAGGGATGGTGCGCCGAGTGCGAGGCGGCGGCCGACGACCTGCTTCTGGAGAGCTTCGGTCGGCTGCGCGGCGCGATCGGCGGGGCGATGCTGGTGACCAGTTCGGGGCAGCCTGTCCGCGAGATGGTCCTGGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCCCGCCACAAAACCGCATCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 2 5913-6877 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPI010000005.1 Actinomadura latina strain ATCC BAA-277 W7474_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 5913 36 100.0 34 .................................... CGGTCGTAGAAGCAGGCGCCCTTCACGTTGTAGA 5983 36 100.0 33 .................................... TTCAACGAGCACGACCTGGACTGCATCAGGAGT 6052 36 100.0 37 .................................... CTTCTTCTTCGCCCCGGCGAGCTGGAGTTCGGTCATG 6125 36 100.0 36 .................................... CTGTCGGTGTGAGTCATGGTGACGTGTCACCCTTCA 6197 36 100.0 36 .................................... CAGACATACCCCGCCTCTCGTCAGTTTTGCGCGATC 6269 36 100.0 33 .................................... CCCTGGTTGGCGCTCTGCTAGGCGCCCCAGTAG 6338 36 100.0 36 .................................... CTCTGGCACCGGCCATAGCGCCCCCCGATGAAAAAG 6410 36 100.0 32 .................................... CTAGCAGGTACACTTTGTACCCGTCTGTCTCG 6478 36 100.0 42 .................................... TCATGACAAGAGCGTCATGACCCGGGTCCCCCGAAAGGTATA 6556 36 100.0 35 .................................... CGACCGACTAGTGTCAGCCGTTGGCGACGTTGGGA 6627 36 100.0 35 .................................... TCGCCCGGCCCTCTGTGGTTACCTCTGTCGATTGG 6698 36 100.0 34 .................................... TGTCACCCATGATCGACTGGCCGTTCTTGGTGAA 6768 36 97.2 34 ........................G........... GTCGACGGGCGCGTGCCTGCGAGAGACCCTTGTA 6838 36 94.4 0 ............G......................A | ATCA [6866] ========== ====== ====== ====== ==================================== ========================================== ================== 14 36 99.4 35 GTCGCAGCGCTCAACAAAACCGCATCGGATTGAAAC # Left flank : AGGAAGGCTCGCTGGACGATGCGGTCACAGATGGTCGGCAACCCCCGCGTCCGGGGCTTGCCGCCGCGCATCAGCCGGACCGGCCGGAGTGGCTGTGCCTGGTACCGCTGTTCTCGCAGCAGCGTAGCCAGGGTCGTCAGCCGGGGTCCGACCTCGCGGCCGAACACGGCCGCCGTGACTCCGTCCGCCCCGGCCATGCCACTGCCGGCGGCCACCCGCGACCAGGCGGCCCATAGCACTCGATCGCTAGCCAGCCGCTCAGCCAGCCGCGCCCCTGCCCTCGTCTGCTCGTGTGTCCTCATGCCCACAACCGATGGACGAGCAGTTTTCGTGCCATTCACAGAATTGCCAGGAGGTTGGCGCACACCTCGAAAATCACCTCTGACCTGCACAAACGCCTGTTTGAAGATCGTCTGCGACACCTCTTCAAGATCGCTCGCGGGGAGGTTGGCGCATGATCTTGCAAACCTGCAGGTCAGACCCCCATAATCTGAGGTACT # Right flank : ACGCGCGGTCCCGTGACGGGGCCGCGCGTTTGGTGTGGGTGATGCGGTCAGGGGCGTGGGGGTGGAGTGGGTGTTGAGAAGTGGGGTGGCGGTGTGGCGTCGCCTTCGCCGCGGGGTGATTCGAGGCCGCAGGCGGGGCAGTCGGGTTGGGGGTCGGCATCGATGGCGGTGAGTGCGGGGCCGGCCAGATCGATGAGGGTGTACGGGCGTGGGCGTGGGCGGTGCCAGCCGGTGAGGAGGTTGAGGGCCTCGCCGAGGGCGATGCCGGCGATGGCCTGGTTGAGGAAGATGACGCTCGGGGTTGGTTCGTCGGGTGCGTCGTGAAGGTATCCGGCGCTGCGCTTCGCGGTGGTGAGGACCGGGTCGAGTTCCATGGAGGCGGCTGTCGGATCGTAGCCGGACAGGCATAGCAGGCAGGGCCCGCCCGGCGTCACGGTCGCGACGTGTCCGGAGACGTCGAGCGGGTTGGACCCGTTCGTGGTGATCTCGGCGCCGGTGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCGCTCAACAAAACCGCATCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 3 29882-28996 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPI010000005.1 Actinomadura latina strain ATCC BAA-277 W7474_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 29881 30 100.0 38 .............................. CGGACGTCGTCCGGGTCGGCGCCCAGCATCCGGCAGAT 29813 30 100.0 37 .............................. GTGCGCTCGGACCGCACGGGGGTCCGAGCCCATGAGG 29746 30 100.0 36 .............................. GCGCGCCGCCCGAGGACGACGCCGGCGCGCCGACCC 29680 30 100.0 35 .............................. CGGCCGCCCGCGCCGCGTCGCAGACCTACTACGTC 29615 30 100.0 35 .............................. GTGTCGCCCAGCGCCGGTTCCCACGACAGGCCCCG 29550 30 100.0 36 .............................. GCGAAGCTGCCGGTCAGTGTTTCGGTCCAGGTCGCG 29484 30 100.0 34 .............................. AGGCGGGCGGTGACGAGGTCGAGGTTTTGGGGGG 29420 30 100.0 38 .............................. GGCTTGTCGCAGGCGACGACAACCAGGCCGAGTTCCTG 29352 30 100.0 36 .............................. CCGGCGGCGGGCAGGACGGCGTACAGCAGGTCACCG 29286 30 100.0 33 .............................. ACCTGCCGGGCCAGGTCGTTCGCGAGGGCCAGC 29223 30 100.0 34 .............................. CCCAGCACCGCGCACACCGCCCGCCACTTGGCCT 29159 30 100.0 37 .............................. CCGAAGAACAGGGCGAGATCCTCGCCGCGGCAGTTCG 29092 30 100.0 37 .............................. GCCATGGTGTGCGTGATCATGGCCTGCCCGAGACCGC 29025 30 90.0 0 ......................A..T...A | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 99.3 36 GTCCTCATCGCCCCTGCGAGGGTTCGCAAC # Left flank : CACCACCGCGACGCCCGCGCCGGCCAAACCTGGTTCGTAGTGACTCAGCGAGGACGCCTCGTGGCGTACTGCCGCGACATCGAAGAAGTGGCCGAATACGTCAACCTCGCTGATCTCCGCGGCCCTGATGCAGCCGAGGGCGCCGGATAGTGCCCTTATCAAGAGCAAGATCAAGACGACCCCTGTGTTCAGGCCCGCAGCACGCCGTGCTTCTCCTCGTAACGAGATTCTGCCCCTGCCTGACGAAGTCTTCCGGCCGTCCCTACGCTCGGACCGTGCGCACTTGTCCTGATCACGACGCTCGTCGAGGACTACCAAGCCAACGTCAGCGGCGGCCTGGAGGGCGTCCACCCGGGGGACCCGCGAATGGGCACTGACAGGCACCGTTCAGTCCCGATTTCAGCGACACCCCGGGCTCAACTGCACGACCGGAGGGTCGCTGAAAAATCGACCAACATGGCCGCTCCTACGCCACGCGCGACCTGCGGCTTTACCATGGG # Right flank : CGCATCTTCGGCGTCTGCCGCCGGGGCAGCCTCGGGGTTCGCCGTCTCGACGGCGGTTCGCAAGCCGTGATCGCGGACGAGGACCAGCGACAGGGCGAGTCGGCTCTACCCTGTTTTTCCACATCAAGCGATGTCGAAAGTCATAGGTTCATCGCGCTTGTAGCGGCGGTATTGCTTAGCCAGGGCGTCGAGTGGAAGCAGGGGCCATCGAGTGACGAGGCCGGTTGTCTTGTCGATGACCAGAGTGGTGACGGCTTCGACTGTGGGGACTGGGGGTGGATCGGGGATGGAGACCAGGATCGGGATGGCCTGGTAGCCGTCCTCGAACTCCTGGAGGTGGAGCACGATCGGGTCTTCCTGGCGGTCGGGTAGGTATTGGCGAGCGCGGCGCCAAGCCTCGGCGGCGTCGAGGGAGACGGAGCGGTTCGGGGTGAGCGGCGAGCCGTGGGCGGGGTGGGCCTCAGGGTTGAGGCCTTCGTCTTTCTGGCAGCAGTGCGTGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 4 51990-50385 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPI010000005.1 Actinomadura latina strain ATCC BAA-277 W7474_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================================== ================== 51989 30 83.3 158 .C.......................ATCG. CAGGACTGTTCGAACTGGCCAAAGTCCCAGATATCGGGTACCGCTCTGCCCGCGATTTCAGCGACACACCGGGCCCAACTGCACAACCGGAGGGTCGCTGAAGAATCGGCCGAAACCACGGCTCATGAGCCATGCCCCACCTGCGGCTTTACCATGGG G [51962] 51800 30 100.0 35 .............................. GCGGGCCCGGCCGGGTCGGGCCGTTCAACGAGCCG 51735 30 100.0 37 .............................. GGAGCGCTCGGTCGCGCGGGGAGCTCCCGGCCTCGGT 51668 30 100.0 37 .............................. AAGTGTTCTGGGACGCGCCCATCCTCCACGTCGCGGT 51601 30 100.0 37 .............................. ACGGCGCCCGCTCGCTGCAGGACATGCAGAACAACCT 51534 30 100.0 36 .............................. TCGCCGAAGATGAACGCGCTGCCGGCCGCCACATCC 51468 30 100.0 34 .............................. CTGACCGTCACGTTCGCGAACGGCACGTTCCCGA 51404 30 100.0 34 .............................. GGCTGCGGCGGCACCTGCGCCCATGCGGGCAGGG 51340 30 100.0 38 .............................. GGTCACTCATCGGCGTCTCCGTCCTGCTCGTCGAGCAG 51272 30 100.0 38 .............................. CGGCATTCGTGGGCGCGGCCGTCGCGGGCGTCGGCGGC 51204 30 100.0 40 .............................. ATGTCCTGCTGGCGGGACAAGGGCCCGCCGCGCCTTGCTG 51134 30 100.0 35 .............................. GCGCGGTCCTGGCCGCCGTGTACGCCGCGGCGATC 51069 30 100.0 36 .............................. AGCGCGGCGGGCATGACCTCGCCTATGGAGGCGGTC 51003 30 100.0 35 .............................. TCGGTGCGGTGCCATTCCTTCGACGTCAGGACCCA 50938 30 100.0 35 .............................. GCGAACTCCTCGCGCCGGTCGAGGAACATCCGCAT 50873 30 100.0 38 .............................. GCGCAGAAGGGGTGGTCAGGTGGCGGGCAGGCCCTTGA 50805 30 100.0 37 .............................. GCGGTGCCGCGGACCTACCGGGCCGAGGACTCCTGCC 50738 29 96.7 24 ..........-................... CGGTCCCTGGTGGTACCACTCGCG Deletion [50686] 50685 30 90.0 35 T..............GT............. CAGAAGACGGGGGTTGCGCCGGTTTCCATGATCGC 50620 30 90.0 36 T..............GT............. AGCGTGGCCTTCGACCCGCAATACGCCGCCGCGCCC 50554 30 93.3 42 ...............G...........G.. GTCATCGCGGCGGCCGCCGGCCTGCTCGACGAGGGACATGGC G [50532] 50481 30 76.7 37 A.G.C......T...G......C..A.... CCGCACGTGCACCCCACCACCCCGTCGGACGTAGTCA 50414 30 73.3 0 ..........A...CG...T...CT..C.T | ========== ====== ====== ====== ============================== ============================================================================================================================================================== ================== 23 30 95.8 42 GTCCTCATCGCCCCTACGAGGGTTCGCAAC # Left flank : GCTTCGCCGCCGGAAAGACCGGCGCCCCATAGCCGAATGGGACCAATCCGTGCGGCCCCCAGCCCGACTGGTGCAGGGTCCGCCCCAGCTCGGGCGCCCCTCGCTCCAGCAGCGCGTAGGACAGGGCCCGCCCCGGAGCCAACACCTCGTCCCATTCCAGCTCACGAGCCCCCGTGTGGAAATTCACCTGTAACCGCACTGCGCCCCGTCCTTTCCTCGTCCTCGGTACCGGCCGAAGACCCGGCCTTCACATGGTTCCGATGGACGGTTCTTGTCAGACCTGCCTGCGAACGTGAGTCGCAGCTTCTCGCCCGGTCCCGGACGCTACACGGCAATCGCCTCAGAGACCTTCAAAAGCAAAGAAGCTAACCACGAGTAACCCTGTCCGCATGTGGCCCTGGCTCCACTCAGAGCTATGCTGAGCAAGATCGCCTTGCCAGGCGCTACCCGTGGGGAGTCGCAACTGGTTGGGTTCCTTGCTGGACGCATTCCGCAAACCC # Right flank : GAATACCTGCCCCGGCGTCTCCAGGCCAAGGGCTCAGCGCCTACGTCCGGTGACTTATACCTGGCGGCCGTGAGAAGCGTCTGAGCATAGTGAGGGGACGACTCCATCACACTGGTCGGTTGGGGATGGTTGCTACCGTCGTGCCGGTGACGCGTAAGAGCACCACCGAACGGACCAAGTGGATCGTCCACGGCGAACGGGTCGTGGACGCGAACCGCCACATTCAGGTCTCGATCGCCAACGTCGAACTGCCCAACGGTGTGCTGTTCGAGCAGTACGTCTTCCGTGTGCCCCGATGCGTCATGACGGCCGTCCTTGATGACGAAGGCGACAACATCCTCCTGATCTGGCGGCACCGGTTCATCATCGATCAGTGGGACTGGGAGGTGCCGGGCGGGTACGCCGAGCCCGGTGAGGATCCGGCTGCCACTGCGGCTCGGGAGGCGGAGGAAGAGACCGGGTGGCGGCCGAAGAACCTGCAGTTCCTCTTCTCGTTCCAG # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.53, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [28-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 5 60622-62114 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPI010000005.1 Actinomadura latina strain ATCC BAA-277 W7474_5, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 60622 30 100.0 34 .............................. AGCGCGACGGCGCGCGGCAGGAAGTGGCCTGCGG 60686 30 100.0 37 .............................. AGCCGCCCGTGGTTGGCGAGGACCTGCAGGACCAGGG 60753 30 100.0 37 .............................. GTGTGCTGTGTCCCGCCGGTGGCGGCGTTCCAGAATG 60820 30 100.0 37 .............................. CCGATGTTCTGGCTCGTCGCGGTCGGCACCCTGACGC 60887 30 100.0 37 .............................. GCGACGACCGTCCCGGCGCCGTCGGCGAGCTGGAAAG 60954 30 100.0 33 .............................. GGCCTTTTGTCCATGGTGATGGTGCCGACGGGG 61017 30 100.0 34 .............................. CGGCTTCGAGGCCGGCGCCGTGATTGCGTCCCTC 61081 30 100.0 38 .............................. GGCGTACACGGTGAACCGGGCGGTGGCGTGGTGCCCGG 61149 30 100.0 37 .............................. TACCAGCCCGCCGCCGCTGGGATGCCCGCGTCGTGGG 61216 30 100.0 38 .............................. GCGCCGCTCACCTTGGACACGGCGCGGTGGGACGGGCG 61284 30 100.0 35 .............................. ATCCGCCACTCGTCCTGGTAGCCGGGGCGGTCGGC 61349 30 100.0 37 .............................. AGCGGCCTGCCGGGGTCACCGGGGAAGCCCGGCCCGT 61416 30 100.0 40 .............................. CCGGTCTGGTCGCCGCGGGCCGCAAGACCGGGTGGCGCCG 61486 30 100.0 37 .............................. GCGTGAACCTGATGCGCCTGTCGCACCTGACCGGTGT 61553 30 100.0 37 .............................. ATTCCTGCTGCTGCGAGTAGACGGTTCAGGGCGGCGA 61620 30 100.0 37 .............................. ACAAGGCCGCGAAGGGCGAGGACGCCCCGATCAAGGC 61687 30 100.0 38 .............................. CGGATCCCGCCGTCGGCGGCACCGGCCTGGCCGGGGGC 61755 30 100.0 38 .............................. ACCGGGCATGGGTCGAGGAGACGATCCGCGAGCACGGC 61823 30 100.0 36 .............................. TGGTCGTGGATCACCACCCCCCTACTCACCGTTCAC 61889 30 100.0 36 .............................. TTCACTTTCCCCCCTTGCGTCGGGTGGCGCGCAGTG 61955 30 100.0 37 .............................. CCGAACGGTTCGGGCTCCCCTCCCTCGCCCCCGACGC 62022 30 100.0 33 .............................. ATGGCGTCGCAGTACGGCGGCGTGCAGGGCCCG 62085 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 23 30 100.0 37 GTCCTCATCGCCCCTACGAGGGTTCGCAAC # Left flank : CTACCTCGACGCACTCGCGCTCACCCGACGATGCCTCGAAGGAACCCCGTACAAACCGTTCAGGATCTGGTGGTGAAGGACGCGCCGTGCACGTCATCGTGGTCTACGACACCGCAGCCGAACGGAACCCCCGCATCCTGCGGACCTGCCGCAAGTACCTGCACCACGTCCAGCGCAGCGTCTTCGAAGGCCAGGTCAGCGCAGCCCAACTACGACGCTTCCAAGCAGAAGTCGAGACCCTCCTGGACCTCAGCTACGACAACGTCATCGTGTACACCTTCCCGCCCGGGACGACCCCCATCCGGCACGCATGGGGCGCTGCTGAACCAGCCCCGACCGACGTCCTGTAGTCCCACTGCGGTACCCCGAACGCACCGGAGTCGATCAAGGAAATTTCAGCGACACGCCGGGCTCAACTGCACGACCGGAGGGTCGCTGAAGAATCGACCGAAAACGCGCCTCATAAGCCACGTCCCACCTGCAGCTTTACCATGGGGCCG # Right flank : CACGTGGAACGGGATGCCGGGCCGTCCTCCGACCTTGGTCCTCATCGCCTCGTCGGACGTACTCTCTTTATTTGTTGCGCTTGATATATTGGCGGTGGTCGCTTATGGGTGCTGTGGTGGGAATATTGGACACGGAACTGCTGGCGGTGGGCGGAAACTCGGTTGCGGCCAGATATGCTTGATATTGTTCGGTTCCTGCTGTTGCTCGAAGGCTAATTAGGTTTACCTCTTCCTGCACGGGATGGGAGAGGCCGGCCAGATGGTGGATGGCCTGGCTGAGGGTGGTGATGGCTTGGCGGCCGTTGGTTTGAGCTGTGTTGTAGCGGGTTGAGAGTTTGCGGGCTGATGCTGGTACGCGTGGTCGGTGGGTGGGGTATTTCTTCTGGCGGTTGAGGGTGCCGATTGCTGCTGCGTCGTTGATGGCGGCGTGGTGGTGGGTGGCGAGGTTGTTGCAGGCTTCGATGGTTTTGAGGGTGATGGTGGCGATTCTTGCTGCGTGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //