Array 1 5419-6316 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKP01000056.1 Caloramator australicus RC3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 5419 37 100.0 41 ..................................... TGCATGCCGTAATTTCCTGTCAATGGTGCCATTTTTTCACC 5497 37 100.0 40 ..................................... TCTTTTACCCAGATGCCGAAGACTTCGCGTGGTTTTAAAA 5574 37 100.0 40 ..................................... AATCATGCCAACTGTGAATGGCTTTCCTTCACCAGAAATC 5651 37 100.0 41 ..................................... TGCTGGATTGAATCCTTTTTGTAGTAGCTTTTTATATGCTT 5729 37 100.0 41 ..................................... AGGTTCGAAAATGTGCCAGAAAATATAAAAACTTCGTCTTT 5807 37 100.0 42 ..................................... CGGTAGGCTAAATAAAACCTACCGACAAAAAATTAGTTTATT 5886 37 100.0 45 ..................................... CGATATTTTGAGGTGTGTTGTACCCCTCTTCTACAATTATATCTT 5968 37 100.0 43 ..................................... CTAAAAATCAGGAGGGATTTATGCCCTCCTGATTATTATTACA 6048 37 100.0 41 ..................................... TCAAGTTATAATTTTCCAGTCGGCGTGATAGATCTATATGG 6126 37 100.0 39 ..................................... TGCTGTAACTATTTTACTAAAATCAATGCAATTTCTAAC 6202 37 100.0 41 ..................................... TTTTATATCTTCTGCAACTTCTGGGGCGCTGCTTACCCCTA 6280 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 12 37 100.0 41 GTAGAAATGACCTTGACCTGATTGAAGGGATTATCAC # Left flank : TTAGAGGCTTAGGAGAGCTTTATATTACAGATGAAGGCTTTACACAAAACATAGATAATGTAAAACCTGGCCTTGCAGGATTTATGAGTAAGGCAATTAAGGTGTATTGTGATAGGGTGAAGAAGTAATTAGCCTTTTATTAGGAGAAAAGATTTGTTTTATGTGAAATATATTTAAAAAAAATAGTCCTGAACTAATTTTTTAGTTTGGGGCTATTTATTTTTAATAAGAAAAATAATTAATAAAATAGAAGGATTTTGAATATTTTGGTAGAATTAATAATATAGAAAAACAAATCAAAAAACCCCTAAAATGTTTTTATACATAGGGGGTTTTTTGAAAACCTCTACATCGCAGAAAAATCAAAGCTTGAGAGGCGATTTTTTTAATATACAACCGATGAATAAAACTTATTTTAGCAGCTAAAAAAAGCGATTTTAAATAGGTTTTCAAAAACCATATTCTCAGGCAAGATTTTTCAATGCCTCCCGAGGGGTGCC # Right flank : CTTGCGGTTGATCTCTTTGATCAACCACTCAGCCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGACCTTGACCTGATTGAAGGGATTATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 893-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKP01000038.1 Caloramator australicus RC3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 892 30 100.0 36 .............................. CAAGTGCTAATTTTGGAATTAGTATAATGTATTCTG 826 30 100.0 36 .............................. AAAGAGATGAACGAGAAACATTTCATTCTCTCGCTT 760 30 100.0 36 .............................. TCCACAAGCGTTTTGGACAAGTTGTGATATAATAAT 694 30 100.0 35 .............................. ATTTCATATACTCCAGGGAATTTAGGTAGTATTAC 629 30 100.0 35 .............................. CTCGCTTCACTTTCCTTTTTCATTTTCTTGGCCAA 564 30 100.0 37 .............................. TCAAATTTAAAATCACATTCCATTATAAAATCACCAA 497 30 100.0 36 .............................. TCAACACTAAACATCTCTGCTGTAAAAGGTTCTTTG 431 30 100.0 37 .............................. TCAACTCGCTTTTCATACAAAAACAAAGCAGATGGAG 364 30 100.0 36 .............................. TTCTTTAATTTAGGTGTATTTTCAGCATTATAACTT 298 30 100.0 37 .............................. ATATAAATGATTTAATACAGAAAGGAATATACCCTGA 231 30 100.0 37 .............................. TTGACTCAAGCACTTTTACAACTTCTGCCGGCGTAAC 164 30 100.0 36 .............................. CATAAACACTAAAATCAGGACTTAATGCTTTACCCA 98 30 100.0 37 .............................. CCTATATTGCTGTAATAATCACTATCTATAACCCCTA 31 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 100.0 36 GTTCTTAGCCTACCTATGAGGGATTGAAAC # Left flank : TTGAATTTTTCTCAAGAGACTAAAGATGCCCTTCCACTATATAAATTTTCTTTAATAGAAGATAATCCGGGATTTATGGATGCATTTGTAATATATGATGATTTAGCACAGTCGACCTTTAAAAGATATTGTGATATGTTAAAATTAACGGATTATTATGATAGAAGAAGGGAATACCTAGAGATAAAAAATATAATAAGGGATTATACCGTATCTTTGCCTATAAAATACCATTCGTTGTTTGATGAGCAATTTGGACTTTATATTTTACCAAGGGAAAGGGTAGTCGATTGCTATAACGAGGAAATAGGGTTTATAAGGCAAGAAAAATCCTACGATATCTTTTAATTTTATTTTTGTCGTCGACCTCCAATCCTGCAAAAAGTGCTGGGGATCGACGACAAAAGAAAATGAGTATTTTCAAGGGTTTGAAGATTTTGTTAACAAAAAATTCAAAATTGACAAAATCTTCAAACCCAGTTATAATAAGCATTGAACGG # Right flank : CG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 37-1191 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKP01000146.1 Caloramator australicus RC3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 37 30 100.0 37 .............................. GTAGATATTCCACCTCTTATATGTCTTTCTTCTAAAT 104 30 100.0 35 .............................. TATTCTATGGACCTGATGAAAATTCTATACATTTT 169 30 100.0 36 .............................. CAACTTCTGCCGGCGTAACAGGGTCGTTCATAAAAG 235 30 100.0 36 .............................. TTCAATTCATTTAAAAGGTCTTTTTTAGTTATTTGT 301 30 100.0 36 .............................. TTTTTTCATCTTTCTTCATAGCTTTTAATTCTTTCT 367 30 100.0 40 .............................. ACGGGCTTCTTGTCAGGCTTCTTGTTAACAATTGCTTCAA 437 30 100.0 37 .............................. CAATTTGAATAACTTCAACTGGAGTAGCAGGGTCAGC 504 30 100.0 37 .............................. TATATGTGACAGAAAAAACCTGCACACTAAAGAAAAA 571 30 100.0 37 .............................. AGTCACTTGGGAATATCATTGTTGTAAAGCTATTTGT 638 30 100.0 36 .............................. AGTTAGAGAATGGAGAATGGGTTTTTGATGCAGAGA 704 30 100.0 38 .............................. AGTAATTTTCTTATAAAGTCTAAACCCTTCTGATATAC 772 30 100.0 37 .............................. TATAACAGGTATAAAAAAGAGTGAGTTTTTACTCACT 839 30 100.0 37 .............................. TAAATATCGTATAAACAGTATCACCAACAATATAACG 906 30 100.0 35 .............................. TCAAAAACAATAATGAACTTAAAAAGGTATGTTAA 971 30 100.0 33 .............................. CTTGCAACTACTTCATTAAATATAAATTTTCGG 1034 30 100.0 34 .............................. ATTCATCTTTGCTCAATCCCTTTTCTTGCTGTAA 1098 30 100.0 35 .............................. GATAAACTTTTTATGTCTTATAATTTCATTGTTGT G [1117] 1163 29 96.7 0 .............................- | ========== ====== ====== ====== ============================== ======================================== ================== 18 30 99.8 36 GTTCTTAGCCTACCTATGAGGGATTGAAAC # Left flank : CGGTAAATCACCAACATAATCCCACCCCATCTCTTCG # Right flank : A # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 1156-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKP01000060.1 Caloramator australicus RC3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1155 30 100.0 36 .............................. ATATAATTATTGCGCTTGACCAATGGATATTTGACA 1089 30 100.0 37 .............................. AATAGATCAGTGATTTACCTAAAATAAGGTGGTGACT 1022 30 100.0 39 .............................. TCATAAATGAGGTTTCCTTCATTTCGATAAATCCACTCT 953 30 100.0 36 .............................. TCAAAATGTTATGTAACTATAATATTTTGATAATCA 887 30 100.0 37 .............................. CCGCATCCAGCCCCGCATATTCGGACAAGTCAACGAA 820 30 100.0 38 .............................. TGTGTTGACTAGGGGAACACCCTAGTCAATCAATCTCA 752 30 100.0 38 .............................. TCATATTTTAATTTTAGCTCCCTCCACAATATCGCTTC 684 30 100.0 38 .............................. TCGATACTTTTTATAAGGTATTAAAGAGGGTGATTAGG 616 30 100.0 37 .............................. TCGGGCCTACCGCTTGCACCCGGAAGGTGCAAGTTCA 549 30 100.0 39 .............................. AAAGTAAAGGAGGTTAATAAAAATGAAAAGTAATTATGA G [530] 479 30 100.0 38 .............................. TCCAGCTCACCAACTATGCGACACTTGTTCTGTCGCAT 411 30 100.0 36 .............................. AATCTAAAATTGTGCTTTCGTTATCTGTCGCAATTA 345 30 100.0 36 .............................. CTTGATGAGGCATATTTATATTTGGATTCAAGAAAT 279 30 100.0 41 .............................. TCGGTTTGCCCGCGCGCATGTTCAACGAACCTTGCGCGCGC 208 30 100.0 36 .............................. GAGGAATTAAGATAAATCAGACTGGAGGTGATTCAA 142 30 100.0 36 .............................. GAGGAATTAAGATAAATCAGACTGGAGGTGATTCAA 76 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 17 30 100.0 37 GTTCTTAGCCTACCTATGAGGGATTGAAAC # Left flank : GTAATAGTTTCAGGGATAAAGGGCGGAATTTTAGCTATAGTAGCAACTGATATCCTTTCATTTTTGCTTATTCCGAATTTATATTATAAACTTGTATTTATTCCTATTTCTTTTTATCCGATAATAAAATCATTAGCAGAGAAAAGAAAATACAGTTGGGCTTTAAAGTATGCTTATTTTAATTTAAGCCTTTTTGCTATGTTGATTTTTGGGAAAATATTTCTATATCAAAACTTTTCATCTACAAATTTACCGATTTTTATAATTGTTTTGTTAATTTTTGAATTAGGTTTCTATTTTTATGATTATGCCTTTACAAAGTTTGTATTTTTCATAGTTAGGAGGATTTTTTGAATTTGTCGTCGACCTCCAATCCTGCAAAAAGTGCTGGGGATCGACGACAAAAGAAAATGAGCATTTTCAAGGGTTTGAAGATTTTGTTAACAAAAAATTCAAAATTGACAAAATCTTCAAACCCAGTTATAATAAGCATTGAACGG # Right flank : CGTAAATGCTTTGCAGGTATTGTTTAAGCCAAAATTTGAGTTCTTAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 2 9986-9559 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKP01000060.1 Caloramator australicus RC3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 9985 37 100.0 43 ..................................... ATCACCTCCTCTCTTTTTTCTACAAATGTTTCGTATGGAATAG 9905 37 100.0 43 ..................................... TAAAGCCATCGGACATTATTGTTTGCACCTCCTTTACTGTGAT 9825 37 100.0 42 ..................................... AAAACTGCAGCTTCAAGTTGTGATATCTGATTATCAATATTA 9746 37 100.0 35 ..................................... ATGAGGTTGAGGCGCGACAGTCCATTGTGACTGTC 9674 37 100.0 42 ..................................... CTGCTACACTATCTTGCCGTCGCAACACACTGTTGCACTTTG 9595 37 91.9 0 .................................AT.G | ========== ====== ====== ====== ===================================== =========================================== ================== 6 37 98.6 41 GTAGAAATGACCTTGACCTGATTGAAGGGATTATCAC # Left flank : TATTCTGATAATGCAGAGTTTTTTAAAACATCTGTTGAACTTTCTATAAAAGAAGTAGTTGATGAAGTATTAAAATTAAAATCCCAAAGGGAAGAATTAGACAAAAAGATAACTCATTTAGAGAGAAAGCTAAATGTTTTGTTTAATATTTTAGGCAAAGACGAAGTAAATATTGATATTGGAAAATTAAAAAGAATAAGAGAAAATGAAGAAAGTAAATGGATTATTGATATAAAATTTTGAATAATGTGGAATTTTAGACGAGATATTGTTATAATTATACATAGGAAAATCAATCAAAAAACCCCCAATCACTTTTTATACATAGGGGGTTTTTTGAAAACCACTACATCGCAGAAAAATCAAAGCTTGGCAGGTAATTTTTTTAATATACAATCCGTGTATAAAACTTATTTTAACAGCTAAAAAAAGCGATTTTAAATAGGTTTTCAAAAACCACATTCTCAGGCTAGATTTTTCAATACCTCACAAGGGGTGCC # Right flank : AATTGTTCGATTATGCAGAAAAATATGAATGGGTAATGTTTTATAATTGGATCAAGAAGAGAGGTGATTTACTGGAGAAGGGCATTTGTGGGGAAAGTCAATTTGACTTTATGTGCGAATTTTTCGCACATAACATAAGGCTTTTTAATGCCTTATGTTAAGGTAGCAATCTTTGGTTGCTACCTGGCTGAACTTTTTTAGTTCAGCATAAAGGCTTGAGCATAGCCTTTGCATTAAGAAAGGAGAGATAATTATGATCATTTAAAATGCAGCGCTAGGCAATGGTGCTTAGCATACCAGCTTATAGGCTGGAGCCAATAGGTATCAAACCTATTGGCATTTTTGTTTTTTAAATAAAAAATCTATACAATGATGCAAAAAAATATGAATTTATAAATGCTTATAATTAATTTTGTGATAAGTTTTGGTTGTGAGGTGTTATAAATGAAGGATTATTATCAAATTTTAGGTATACAACAAAATGCCACCCAAGATGAGAT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGACCTTGACCTGATTGAAGGGATTATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 13550-11732 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKP01000159.1 Caloramator australicus RC3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 13549 29 100.0 39 ............................. CTTGAGCCTTGCCTTCCAAGCCTTCTGGAATAAGCTCAG 13481 29 100.0 37 ............................. CTTCTTAGCTTTTATCGAGGCGACTCGGTTAGGCCCG 13415 29 100.0 36 ............................. AGTAGTATTAATAAAATTATTATTTGAATTATAAAA 13350 29 100.0 35 ............................. GCTTACCAACTATGCAGCGCTCTCGATGCTGCATA 13286 29 100.0 36 ............................. CTCGCTGTTTCTATTATTATTATATGCGATTCTTAT 13221 29 100.0 37 ............................. TTGCAAGTCTTAATATGCTTGATCCTCTTGCTACATC 13155 29 100.0 35 ............................. CACGTAAGATAGTAAATAAAACATATAAGCCAAGC 13091 29 100.0 39 ............................. AATATAATCAATTAATTCATTTAATTTGTCTTTTATATA 13023 29 100.0 38 ............................. TTTAAACCTTTCTCCCAAGCGTATAAATATAATTTTTC 12956 29 100.0 36 ............................. GATAGATTGCTTGAATTCGACGAAGCAATAGGCAGC 12891 29 100.0 40 ............................. TTAAATACATCTTATAGAAGTTTTTCTGCTAAAGCTGTTG 12822 29 100.0 36 ............................. GAAATAGAAGTAGTAGAATTCTACACTTTATAGAGC 12757 29 100.0 36 ............................. CTTTCTCCTTTGGCCAATCAAGAAATTTTATTTTAT 12692 29 100.0 38 ............................. CATAGAGCAATATAGGGCATAGGTTCGATTTCAAATTC 12625 29 100.0 36 ............................. GCCTTCTGGGATAAGCTCAGCCTTTTCCCAAAGTTC 12560 29 100.0 41 ............................. TTGCGACTGGCTTTTGGGATAATAAATATACATTTTCTCTG 12490 29 100.0 37 ............................. GTTTGTTGTGCTCTTGTTTTGAATGTTCTTTCTCCTG 12424 29 100.0 37 ............................. TTTACTTTTATTATACATAAAATTTTAATATAAAAAA 12358 29 100.0 37 ............................. TAACCTTATCAGTTGTTAGTTCCTTATCCTCATGAAC 12292 29 100.0 37 ............................. TAATAACTTCATATTTTGAACGTTTCGAACTTTCATG 12226 29 100.0 37 ............................. AGTTTATTCCCTAATTTTTCAGCTACTTTTTTTGCAT 12160 29 100.0 37 ............................. AATAATCTTTCAATAATTGACACAGTATCAATTCAAC 12094 29 96.6 37 ..........A.................. TGCAAAACGAAATCTTGAAAATCAACTTAAAAGGCAG 12028 29 100.0 38 ............................. AATGAAGCAAGAACAATGGAAGAAAAGGAACCGCTTGA 11961 29 100.0 38 ............................. AACGAATATTTAGAGAAAAGTTTGAACAAATGGCAAAT 11894 29 100.0 39 ............................. ACTTTAAATGTAAATTTTGATGTATCACAACTTATTAAT 11826 29 100.0 37 ............................. AAGATAAAGCAAGATTAGGGATGGATTATGGTAGATT 11760 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 28 29 99.9 37 GTTTTATATGGACTATGTGGGATGTAAAT # Left flank : AAACATCTTTTAGGGGATGAAATATATAAACCATTAAAGGCATGGTGGTAATATGTTTGTAATTATTACCTATGACGTAGGAGAAAAAAGAGTAAATAAAGTTAGGAAAAAATTAAAACAATATCTTATGTGGACTCAAAATTCAGTTTTTGAGGGAGAAATAAGCGAAGGGAAGTTGCAAAAGTGTTTGTTTGAAGTAAGCAAAATTATAAAAAAAGAAGAGGATTCTATTTATGTATATAGAATTAACTTTCCAGCACAGGTTAAAAAGGATATAATGGGGATTGTAAAAAGCTATGAGGATATATTTATATAACTGCAGCGAACCTAATTTTGAAGGAAAGTTATTTTAAGGCTTGAATTAACTAATTTAAAGACTATTCGTTTATAAATTCTATTTTCACAATCCCCTCTTTGCTGCAAAAAATAACAATTATAAATTTGAATAGTATTAATTTAAGCTAGAATAATTAAAGATTGATTTAATATGCTTAAATAGA # Right flank : TGATTTTATGTTTGATTATTCTTCATAATGTTCTATATTCACTATTGATTCCTTGCCTAAATTTAATATTTTTTTTATTACACTAACATATAAATTTAATTGAAAATTCTTGAATTTATTATATATAATAAAATTCGTGTTTAATCCTTTGTTTAAGAGGTGTCAGGGGATGGAGATGGATTCTGTTATTTTAAAACTTATCGATATGATGCAAAATGCCTTTGCCTATCACAAAATAATTTTAGATAAAAATAATAAACCAGTAGACTATGAGTATATTTATGTAAATACGGCATTTGAAGAGCTAACTGGATTAAAAAGACAGAATATATTAGGAAAAACTGTAAAACAAATTATACCTGACATTCAAAATAGCAGCTTTAATTGGATCGAATATTATGGTAATATTGCCCTAAACGGAGTAGAGGATCATATTGTTCAATATTTTGACATTTGGGATAGATGGTATAGGATAGACGTCTTTTCCCCTGAAAAAAATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATGGACTATGTGGGATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 15993-15364 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKP01000157.1 Caloramator australicus RC3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 15992 30 100.0 36 .............................. TATTTTTTCCTGCCTCAATTTAAGCCCTCAAGTAAA 15926 30 100.0 37 .............................. CTTTTCTTTATATTTATATCATTTGAAATGATAATAT 15859 30 100.0 35 .............................. ACTGGAAATATTTTTACAATAGGTTTCCATATAAA 15794 30 100.0 36 .............................. GCAGGAAAATTTTAAAAGGAGGTATAAAAAATATGA 15728 30 100.0 37 .............................. GTTTTATTAGGGATACCAAAACATCTGCCAAAACCCC 15661 30 100.0 37 .............................. TGGGATTTAATAGTTAGACGTGCTTATGATACAGGAG 15594 30 100.0 38 .............................. CCAATATAATTGTCCTCTGCTGTTGTTTTTATATCATC 15526 30 100.0 36 .............................. AAATACCTCTGCCACCTTGAGGACTGCAATAGCACC 15460 30 100.0 37 .............................. TCGCCAATTGCATCAGCTTCAACGATTTCCTTTGACC 15393 30 86.7 0 .........................TTT.T | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 98.7 37 GTTCTTAGCCTACCTATGAGGGATTGAAAC # Left flank : GGACGTTTGATCGTC # Right flank : TTTTTTTAAGGGGAGATGGTTTTGTGCTGGGAGCTATTATTGGTGATATTGTAGGTTCGAGATTTGAATTCCATAATAAGAAGACAAAGGACTTTAAGCTTTTTAATCAATATTCGCATTTTACAGATGATACTGTTCTAACAGTTGCTACTATGGATGCATTATTAAATAAAAAGCCCTTCGATGTTACATATAAGGAATGGTTTAGAAAATATCCCGATGCGGGTTATGGAAGTAAATTTATAAGTTGGGGATTATCAGATGGATTTAAACCTTATAACAGCTTTGGAAATGGTTCAGCTATGAGAGTTAGTCCAGTAGGATTTTATTATGACAGTGAAGAAGATGTCTTAAAAATGGCTCAAGAAAGTGCAAAAGTTACCCATAACCATCCTGAAGGAATTAAAGGAGCTCAGGCTACAGCTTTGGCTATATTTTTGGCAAGAAAAGGTGCAACAAAGGAAAAAATTAAAGAGGAAATAGAAAAAAGATTTAATTAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 7059-2439 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKP01000114.1 Caloramator australicus RC3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 7058 30 100.0 39 .............................. CTCGCTTCACTTTCCTTTTTCATTTTCTTGGCCAACTTC 6989 30 100.0 37 .............................. TCACAGCCTTTGATGCTATCCTGTACATTTCGTTAAA 6922 30 100.0 37 .............................. AGCTTGCAATACTCGGCATAATTAATAGCAGCCTTAA 6855 30 100.0 38 .............................. TATATGTGACAGAAAAAACCTGCACACTAAAGAAAAAC 6787 30 100.0 38 .............................. ACGGGCTTCTTGTCAGGCTTCTTGTTAACAATTGCTTC 6719 30 100.0 36 .............................. ACAATTGCTTCAAGTGAATGCTCAAGAACTTCTTTT 6653 30 100.0 35 .............................. ATAATCTCATGTTTTGGTCTATCATAGCCGATAAG 6588 30 100.0 35 .............................. AAGAAAAACAAAAAAAAAACGAAGGAGGCAAATAA 6523 30 100.0 38 .............................. AATGCTGTTGTAGAAGCTCTAAAAAAATCAAACCTTGT 6455 30 100.0 38 .............................. AAAGGTCTTTTTAGTTATTTGTAGTAATTGTTTTTCGT 6387 30 100.0 35 .............................. TTAGTAAAAGGTATCGCTACTTTACTCCCATCAGA 6322 30 100.0 35 .............................. AAATATTCTTTTTATTCAAACATTGCATATACATC 6257 30 100.0 37 .............................. TATAGAAGCTGAAGTTAAAACATTAAAAGAGTTAGAA 6190 30 100.0 37 .............................. TTTCGTATTCTTCTTCTTCAATATAATCTTCTCTTTC 6123 30 100.0 33 .............................. TTTGAAACATTTGTGTTAACAGGCGGTATTTGT 6060 30 100.0 35 .............................. CAGGAAGCGGGAAAAAACTGTGCTTTAGAAATTCA 5995 30 100.0 36 .............................. GATTAATATCTGCTCTTTCTTCTACAATACCTCTGA 5929 30 100.0 36 .............................. ATCGATTGCGAGGGTGGTGAAGATGGAAACTAAAGT 5863 30 100.0 38 .............................. CTTTGTATAGATTGTCATAATAGGGAACATACATTGAA 5795 30 100.0 38 .............................. TGTGAGCGTTGTGGTAAGCCTGGAGATATTGTTCATCA 5727 30 100.0 37 .............................. TCATTCCATGCGTGTATCTCGTCAAGCAAAGCTCCAT 5660 30 100.0 35 .............................. AAAAAGCTAATCAAGAGGATTTTGCGATTTACGTC 5595 30 100.0 37 .............................. GCTTGTAACAACTGATTTTCGTCAGTTGTTACGATGT 5528 30 100.0 39 .............................. TATTGATAAAGGATAAAATTCTTTCCGTCAAATTCTTCA 5459 30 100.0 37 .............................. TAAATTCCTTTAGCAATACTGCTTATACCGCTTTTTA 5392 30 100.0 37 .............................. TCCCAAATATTGCTTTATCAAATTCTCAATTTGTGAA 5325 30 100.0 38 .............................. TTGTGGATTCTTTTGGGAAAAGGCTTAGACAATTAAGA 5257 30 100.0 38 .............................. TGGAACAATTGCAAGCACTAACCCTGTTATACATCTGC 5189 30 100.0 36 .............................. ATGAAGCATATCTACAATTCAGCAAAGAAGAGCTCC 5123 30 100.0 36 .............................. CGAAACAGCAAAGAGAATTGAAAAAGGAGTTAATGA 5057 30 100.0 34 .............................. AAATTGCTTGAATGTGAGCAAATGATAACACTTG 4993 30 100.0 36 .............................. ATAACGGACCATGGAAGACTAACTTTGATGAGATGG 4927 30 100.0 37 .............................. TCCTCTAAATAAAATTTCATCACATAATAACCTTTTT 4860 30 100.0 37 .............................. ATAAATTAGCAGAAAAATTTCCAGAGGTGAAGGGATA 4793 30 100.0 37 .............................. AAAATTATGTTGTTCCTTATGCTTACTTTGAGCCACA 4726 30 100.0 35 .............................. TACCTTTTTCGCTTTGAATAGACGCCTTTATTTTA 4661 30 100.0 36 .............................. CCGCTACCATATGCTATTGCGCCTTCACCAAAAATA 4595 30 100.0 36 .............................. CTTATTCCTCTTCATCATCACGCCAATATTCAACTG 4529 30 100.0 35 .............................. CCAGCTTTCGCTTCATCATCCTGCGCTCCATCACC 4464 30 100.0 37 .............................. TACATCTGCACATAGGGACTTTAATAGCTGATGATTA 4397 30 100.0 35 .............................. CCAGCTTTCGCTTCATCATCCTGCGCTCCATCACC 4332 30 100.0 37 .............................. TACATCTGCACATAGGGACTTTAATAGCTGATGATTA 4265 30 100.0 38 .............................. TGATACGACGAAAGTAGGAAGAACAGCAACAGGAACTG 4197 30 100.0 39 .............................. AATGGGGACAAATAGCAAACTATGTAGAAGTTGAAACCC 4128 30 100.0 38 .............................. CTTGAAGAAAAGCTAAAAGAAATACAAAAGAAAATTGA 4060 30 100.0 38 .............................. AGGAGTGAAGAACAATGGCACTCACAGAAGGAGTTGAC 3992 30 100.0 37 .............................. GAAACTTTATTTGAAAAGAAGGCGTAAAATTGCCTTC 3925 30 100.0 39 .............................. CTTCAATAGTATATTTTTTATTAACATCAATTTTTTCTA 3856 30 100.0 36 .............................. TAATATCTTCAAATTCTTCTTCATCATCAATTCCCA 3790 30 100.0 33 .............................. TAAAAACACATTCAAATTTATTATTTTCTTCTT 3727 30 100.0 38 .............................. GAAATTGCTTTAGACCATGAAGCTGAAGGATTAGTTTT 3659 30 100.0 37 .............................. AGTTATAATTTGATTTGTTTGATTTGTTTGATTTTTC 3592 30 100.0 36 .............................. ATGTCGCTTTATAAATTTTATTTTTCTTTTAACTTC 3526 30 100.0 36 .............................. AAAGAGTTAGACGAGTTTGTGAAAGACCCAGAAACA 3460 30 100.0 35 .............................. TTTCTTTTCAGTTGACTTCTTTTCAGACTTCTTGA 3395 30 100.0 36 .............................. AATTCTTCAATGTCTTTAATTAATGTCGCTTTATAA 3329 30 100.0 37 .............................. GTTCAAGATGTTGTAGTTCAAACTCTCAAGAAGTCTG 3262 30 100.0 36 .............................. TCAAATTCTTCAACGTCTTTAATAAGTGTCGCTTTA 3196 30 100.0 38 .............................. TTAAAGACGTTGAAGAATTTGACAAAAAAATTTTATCA 3128 30 100.0 37 .............................. TCTAATTCATCTAATAGATTTTCTAAAGCCTCTGCTC 3061 30 100.0 35 .............................. ATAAGATCTTTAAAATAAAATTTTTACCATTCTCA 2996 30 100.0 36 .............................. TTAAATCTCTTAGATAGAATTTATTTTTATTTATAA 2930 30 100.0 37 .............................. TAGAAATACCTCTATTTTGCCATAAAATCGTTTTTAA 2863 30 100.0 37 .............................. TCTAAATAAGCTTCTGAAACTTGAATTAATTGGATCT 2796 30 100.0 35 .............................. AAATAGTTGTAGTGTGCATCTGCATTTGCTCCTTT 2731 30 100.0 37 .............................. AAACAGCTTAATAGTTCATGGCCTGACCAAGTTCATC 2664 30 100.0 35 .............................. CGTCTACCAAATTGTGATGAGGTGGACGAAACTAA 2599 30 100.0 35 .............................. GTGGTCGATGAAACGGAAATAGATAAAATAACTCA 2534 30 100.0 36 .............................. AACAACAATTGAGCTTCATCAATAATAATGAGATAT 2468 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 70 30 100.0 37 GTTTATAGCCTACCTATAAGGGATTGAAAC # Left flank : GATGATCCTATGTTTACAGAAAGATTTGAAGCATATGTATATGGTAGAGAAATAGCAAACGCTTATTCAGAATTAAACGACCCAATTGATCAAAAGGAAAGATTCCTACAACAATTAAGAGAAAGGGAACTTGGAGATGATGAAGCTTATATGATGGACGAAGACTTTATAAATGCCCTTGAAATAGGTATGCCACCAACAGGGGGATTGGGTATTGGAGTAGATAGACTCATTATGTTCCTAACTGATTCATATTCAATCAGAGACGTAATCCTCTTTCCAACAATGAAACCGACGAAGTAAATAAAATGAACATAAAAGGCAGGAGCTATCCTGCCTTTTTGCATTCCTTTAATTTGTCGTCGACCTCCAATCCTGCAAAAAGTGCCGGGGGTCGACGACAAAAGAAAATGAGATTTATCAAGGGTTTGAAGATTTTGTTAACAAAATATTCACAATTGACAAAATCTTCAAATCCAGTTATAATAAGTATCAAACGG # Right flank : TTTGAAATATATAACAGAATTAAAAGAGAAAAATGGACATTATCTACATTCTGAGTGTTTATAAACATAAGGGAAGTATGTTTTTTTATAAAAGGGTATTGCAAACAGAAAAAAATCTGCTATAATATTCTGTGTAAGCGTTCCACGGTAGCTCAATGGTGGAGCATCCGGCTGTTAACCGGAGGGTTGGAGGTTCGAGTCCTCTCCGTGGAGCCATTTTATTTTTTGTGTGCTAAATGTTTAGGACAAAACTTCCATGTCAATATCTTTTGAAAATGTCACCTAAAAATAATTTAAAATAAAGTTAATTATCGTATGAAAATGTCATTTAGATGGGTAAAAATTAGGGGGCTTTGCCCCCTAGAACCCCCCATCCTCGCCGGAAGGCAGAGGGGCAGATTAATCTGCCCCAAAAAGGCAATAGGATACTATGCCGCCTGATGTCAAGGCCTTTCGCGGCATAAACGGGTGCCCTCCCACAAGTGGGCCCCTCCCATTTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGCCTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 50-480 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKP01000071.1 Caloramator australicus RC3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 50 37 100.0 41 ..................................... AAGCATTTGAATTGAGAACGCATTTGATAAATATAACATAC 128 37 100.0 43 ..................................... GGCTTTTAGCCCCTTTACTTTACCAGAGTGGGTTGTCGTCTAT 208 37 100.0 43 ..................................... GGCTTTTAGCCCCTTTACTTTACCAGAGTGGGTTGTCGTCTAT 288 37 100.0 46 ..................................... TGATTTGTTTTTCTACTGCTGCTTCGATCTTTGGATATTTCATTGC 371 37 100.0 36 ..................................... CAGTTGCTGCCATCACATTGAAACAAATAATTCCAA 444 37 91.9 0 .................................CT.T | ========== ====== ====== ====== ===================================== ============================================== ================== 6 37 98.6 42 GTAGAAATGACCTTGACCTGATTGAAGGGATTATCAC # Left flank : TTATCACATTCCCTATCATTTCCTGCAAACTATCTGCCTTATTTATCATG # Right flank : TTGCATGAGAAATAAGAAAGGAGGGATTTTTACGAATCTTAATGAAGCAAGGCTGCTTTTAGATAGGTATAATAATGACTTGGCAACATTATATTCTGAGCTTAAAAATAATGTTGTAATTCAAAAAATTAAAGAATTGAATGGGACAGAAGAAGTACTGAGCAACACAAAGAGTTTTGTTGAAATTTATACTAAAATAGTTGAATTAATAAATAATATAAACAAGTTATCTTCAGAAATAAATAAAGCTAATAATGAAATTGAATGCATGCCAGGGGTTACAATTCAAAATGCGCTATCCTCTTTAAAATCTCTTAGAACTTTGCGTTCTAATTTGTCGGCAATATATACATGCAACAGCTTTAAACAAAGAAAATCTGACGTAAATGGTAGTTCTTACTATTTAATTCAAGAATTAAATTTTGATAAAGAATGGCTCCAAAAAGAAATAAATAGAATAAGTGAAGAAATAGATAAATATGAAGCTGCAATATTAAAGG # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGACCTTGACCTGATTGAAGGGATTATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 4-560 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKP01000154.1 Caloramator australicus RC3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================= ================== 4 27 100.0 40 ........................... AACACAGGAATAACGTATAATTCTGTTGAAAATATGAAAA 71 27 100.0 37 ........................... AACCTTCCCTTCCTTTTCTCCCTTGGCTTCTTTTTTA 135 27 100.0 39 ........................... AACACGGAAATTGGATACAAAATGCTGATATAGCACATA 201 27 100.0 40 ........................... AACATGCTCATTTAGCAAATACAATGCCTCATAAATTTAC 268 27 96.3 40 .................A......... CACTATATACTACATTAGCTTCCATGATTTGTAAATGCAA 335 27 92.6 38 ...T.............A......... CACGTATCTCAATACTATAATTTCCTTTAGTAATGTCG 400 27 92.6 41 ...T.............A......... CACACAATTTTCTCGTAAGGTTGTCCTGTAACGGCAGCAAG 468 27 92.6 39 ...T.................T..... AACTGGCATTCGTCCAATATCACTACCCAATCTTCGTTG 534 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ========================================= ================== 9 27 97.1 39 GTTCTTAGCCTACCTATGAGGGATTGA # Left flank : TGTG # Right flank : AAGCAATTTACTTTCTCTAAGGCACTAACGATGATACATTATAACCTATCTAATATTAGTGCAAAAAAATGTGAATGGCATTTAAAGTATAATTTTTTACGAGGTGATACATTGGAGGTAAATGGAACTTTAATTTGGTATTATAAAATATGCAAAAGACAAGTCTGGTTGATGTCCCACGGAATAGTTCCGGATCAACATGATGAAAATATAGATATAGGAAGATTTATACATGAGAACTATTACAAGAGGGACAAAAAGGAAATAAGATTTGGCAATGTTGTGTTTGACCTTTTGTATGAAAGGGGAAATGAACTTATAATTGGTGAAACAAAAAAGTCTTCGAAATTTGAAGATGCTTCAAAGTGGCAGCTCATGTTTTACTTAAAGATTTTAAAGGAAGCTAATATCAAAGCAAAAGGCATACTAAATTTCCCCGAAGAGAGAAAAAGTATAGAAGTTGAACTTTGCGATGATGCGGAAAGGGAACTTGCAAAAAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTAGCCTACCTATGAGGGATTGA # Alternate repeat : GTTTTTAGCCTACCTATAAGGGATTGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //