Array 1 464283-466080 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIWD01000003.1 Salmonella enterica subsp. enterica strain CB5 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 464283 29 100.0 32 ............................. GCAAACAAATTCTTCCCCGTAGGTTCGCTGTC 464344 29 96.6 32 ............................T CAGCAGAGATACTGCGGTAATGCTACAAAAAC 464405 29 100.0 32 ............................. TTAGGGAGAAAACTCGGTTACTCACAGACCAG 464466 29 100.0 32 ............................. GCGTTGCACTGACTTAAACACAGATTCGCGGG 464527 29 100.0 32 ............................. CAGGCGAAGAAAATTAACATTACGCATAATCC 464588 29 100.0 32 ............................. CCTGCTGGCTGATGTTAAACGTAAAACCAGTG 464649 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 464710 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 464771 29 100.0 32 ............................. GATGACGCGATAACGGAACTGATGTCGATGAT 464832 29 100.0 32 ............................. CACCGCCTTGAGCTATAGACGTCCCGGTGTCA 464893 29 100.0 32 ............................. ATGGACAACGGTTTCGTTGCTGTCGGCAAGCC 464954 29 100.0 32 ............................. CAGATTGACATTAATGCCACGATAATTGAACG 465015 29 100.0 32 ............................. TGGAACCGTAGAATAATTTCAAAGCCAGCTCA 465076 29 100.0 32 ............................. CATAACTTATCGCATATTTTAATTAATGAGAA 465137 29 100.0 32 ............................. GAGGTCTGTAATGCCAGTTTATGAGTTACCGC 465198 29 100.0 32 ............................. ATGTGCTCGCACTGGTTCAGCCCTAGCCAGTG 465259 29 100.0 32 ............................. CTACGCATCCAGATGGATCATCTCTTGATAAA 465320 29 100.0 32 ............................. TTAACCCTGAACTGGTTTACCTGTTCTGCCGT 465381 29 100.0 32 ............................. ACGATTCCCATAATTCACGGCTAATGGTTTCC 465442 29 100.0 32 ............................. ACGATTCCCATAATTCACGGCTAATGGTTTCC 465503 29 100.0 32 ............................. CTGGTGGCGCTGGCACTGTTTCCAGTTTGGCT 465564 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 465625 29 100.0 32 ............................. TTGAGCCATTCGCTTTCAATTTTCGGCGCATA 465686 29 100.0 32 ............................. CATCTGGCCTGTAGTTCGGGCCGTGTAAGATG 465747 29 100.0 33 ............................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 465809 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 465870 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 465931 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 465992 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 466053 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGAATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTCTACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGCCCCTCTACCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 482776-485673 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIWD01000003.1 Salmonella enterica subsp. enterica strain CB5 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 482776 29 100.0 32 ............................. TCTCTTGGGGCTTGATTGCCTAAACAAACTTT 482837 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 482898 29 100.0 32 ............................. AGCGTCTTTCTGCTCCTTCTTGGAGGCTATTT 482959 29 100.0 32 ............................. TGATCCGCGCTTACGACGCTATGATGGCCACC 483020 29 100.0 32 ............................. TGGCCGGGGAAACAAGGCAAGTCCTGGTTTTT 483081 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 483142 29 100.0 32 ............................. CGCTAACCCGCGTCATTTCATCTGACACGCCT 483203 29 100.0 32 ............................. AGTGAAGTGGCGCGGCTTCAACGCAACATTGA 483264 29 100.0 32 ............................. AAACCTACATCGAACACGCATCATCAGTTGCC 483325 29 100.0 32 ............................. AGGCTCACGCAGCGATGAATAACGAACCAACA 483386 29 100.0 32 ............................. GATTTCATTGAATGCGTGATCAATGATTTTTT 483447 29 100.0 32 ............................. CGTTAACGCTTCCCTATGATGAGGCACAGAAA 483508 29 100.0 32 ............................. AGTTAAAACGGGGTGAATTACCCTGGTCTATT 483569 29 100.0 32 ............................. TCTCTGAGCGAGATATTTTTTATTTAACGCCA 483630 29 100.0 32 ............................. GCATGTTCTGAAGTGAAGCAAATGTTATAAAA 483691 29 100.0 32 ............................. TTTTTTTCTTAGCCATGGTTACTTCCTCCTGA 483752 29 100.0 32 ............................. CTGTCTTACACTCCCATCGTTCACAGTCGCAA 483813 29 100.0 32 ............................. TCGTCGAATTGATCTTTTACGGCAGCAGGCAG 483874 29 100.0 32 ............................. CAATCTCGTCGGCAAAAAGCAGTAAACGAATT 483935 29 100.0 32 ............................. AGACTCAGCTATGGGACTGAAATCATATATTG 483996 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 484057 29 100.0 32 ............................. CGTGATGAGTTGCCAGTGCAGTAGTCATGTAT 484118 29 100.0 32 ............................. CGTCGCGAAACCTACGCCAGCGAGGTCCCGGA 484179 29 100.0 32 ............................. CCGGTAAACGTTGATTGCAGGCGCTCCATTTT 484240 29 100.0 32 ............................. TTTTCCCTGGCAGACCATAAAGTCTGATGCTA 484301 29 100.0 32 ............................. CAGTGGTGATTTTTGTCCCCGGCGCAATTGCC 484362 29 100.0 32 ............................. GGGACGAGAAACGCCACTTTTATACCAAAAGG 484423 29 100.0 32 ............................. GCTTCAGAGCTGGAGCTAGCAACCTTGCGGCA 484484 29 100.0 32 ............................. GCTCGTCGCCGGTTAACGCTCGATCAGTTCCA 484545 29 100.0 33 ............................. CGTACATCCGGCATTTTCTGGAACCTGGTCATG 484607 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 484668 29 100.0 32 ............................. TTTCCGTGATCGGTGTGGAACAGGGGTTTATC 484729 29 100.0 32 ............................. TCCCAGCACATCCCCCTGTCTCGCAAGGCACA 484790 29 100.0 32 ............................. GTATTGGGTTACCTTTAGATCCACCATTAGCA 484851 29 100.0 32 ............................. ATCGCTATATTTAGCCCGTAGTTCACTAATAA 484912 29 100.0 32 ............................. TGAATATTGGTGAGCGCCAGTACCCTCAAGAG 484973 29 100.0 32 ............................. ACTACCTGGAATCAGATATCAGTTTTGTGATG 485034 29 100.0 32 ............................. GAGGATTTGATTTTCCCACGTTTTATATCAAT 485095 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 485156 29 100.0 32 ............................. CAGCCCACTCATCCCCAAACAGGTCTCATTGT 485217 29 100.0 32 ............................. TACCGCGGACTTATTCCCCATTGCTGGGTGTT 485278 29 100.0 32 ............................. AGGGCCGCTGGGCGGGAACTGCTGAAATTCGT 485339 29 100.0 32 ............................. AAATGTGCTCTATAATGGGCCTGTCTCGCGTC 485400 29 100.0 32 ............................. TATAATTTACGCTGCCCTTTTTGGTCACCCAT 485461 29 100.0 32 ............................. GCTGGAGTGTTACTCCCTGACTCATAATTTGA 485522 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 485583 29 100.0 32 ............................. AAAGAGCGCGGAATGATTTTTAACGGTGAGAT 485644 29 96.6 0 ............T................ | A [485671] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //