Array 1 25601-27584 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSDL01000054.1 Streptomyces sp. TR1341 NODE_54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25601 29 100.0 32 ............................. GCTCCCTGCTGTTCCGTCATCCCTGACTCGCC 25662 29 100.0 32 ............................. AGTCGCCCACGACCCAGTTGACGAGGACGGTG 25723 29 100.0 32 ............................. TCGCTCACGTCTGCCCCCTGTTGCGTATGCGG 25784 29 100.0 32 ............................. GCGCGCTCCACCCTCCAGATCGTCTCCGAGAC 25845 29 100.0 32 ............................. GCGTAAGCGGCAACGCCAGTCGTGGTGTCGGG 25906 29 96.6 32 .............G............... CATCCGGACCGCTCTTGGAGCAGGGCCCAGAT 25967 29 100.0 32 ............................. AGAGACTTCACCGCCTACCCCATCGGTATCCG 26028 29 100.0 32 ............................. CGGATGATGCTGCGGGCGATGCCCGGCGCCGC 26089 29 100.0 33 ............................. GCTCATTTCGGCTGGTCATGACGGCCTCGATCT 26151 29 100.0 32 ............................. CGGGCGCTGTCGTCGGCGGGGTCGCCGCAGTC 26212 29 100.0 32 ............................. AAGGCATCGTCGTGGTGGGCAAGGCGTTGGTG 26273 29 100.0 32 ............................. CAGCGCCTGGTGTCGTCGGGCACGGCTTCCAG 26334 29 100.0 32 ............................. GGCTTCCTGTGCGAGGCGCGGAGCACCCGGGA 26395 29 100.0 32 ............................. GGTGTGGGCCAGACGGACACCGACAGCAGCTC 26456 29 100.0 32 ............................. TCCCAACCGGGACGCGGCGACCGGGTGGCGTG 26517 29 96.6 31 ............................G CCGCAGCCGCGCCGCCCGCTACGCCGAGGAT 26577 29 100.0 32 ............................. GCCTGACCAGGCAACTTGTCGGGACACGCCAA 26638 29 100.0 32 ............................. GCGGCATCGGCCGGGCCCTGTGGCCTACTGGC 26699 29 100.0 32 ............................. CCGTCCGGCTCCAGGTCGCCGTCGTGGAGCAG 26760 29 100.0 32 ............................. TCCTCCCACGTCTTGCCGACGACCTCGGCGCC 26821 29 100.0 32 ............................. GCGGAGTGGACGCAGCAGGCCGTGCAGCTGCT 26882 29 100.0 33 ............................. CTCGGGTTGTCGGTCGTCCTACTCGCTGAGCTT 26944 29 100.0 32 ............................. TCGGGGCGCTGCTCGGCGTGCCGGTGCTCGTC 27005 29 100.0 32 ............................. TTCCGCCTGATGGAGGGCACCCCATGGCAACA 27066 29 100.0 32 ............................. AGATCCTGGACTTCCAGCACCGCTACGTCTTC 27127 29 100.0 32 ............................. GCGCCCTGCTCATCACCACGCTCGCCGTGCCG 27188 29 100.0 32 ............................. GGGCAGTAGTCGGGGCGCTTTCCCGGGTGGAA 27249 29 96.6 33 ............................A CGGCGGGCCGCCTGTGCACGCGGGTGCCACCAG 27311 29 100.0 32 ............................. GCCGGGTGAGACGTACTGGGCGTTCGCGGACG 27372 29 100.0 32 ............................. TGACAAGTCCTCCAAGGAATTCGCACTCCCCC 27433 29 100.0 32 ............................. AAGCGGTGGTCGCTGACGTCGAGCGGCGCGTA 27494 29 96.6 32 ..........................T.. GACCGCCTCGCCTAACTCTGAAGGACACCCCA 27555 29 79.3 0 ......TT..T..C...A..........G | A [27580] ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.0 32 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : GGGCGGCGGGCACAGTACCCCCTGGGCGGATGCGGGGACCGGTACTTCAGCCCGCGGCTCACGCTGCACGCTCCAGCCGCATCTCCCCGAAGCGGACTCGCCCAGCGGCCTTCCTCTTTGCCGAGGCCCTGTTCCGCCGCTGACAATCCGACTGCGCCGGCCGTGCGCCAAGGCTGTCCGGCGGGAGATGGCGTACGACCGAATCCGACTGCGTCAGCGTCCGGCATGGCTGTACAGGCACCCAACGCACTGCTGCTACGACCCACGTGGCAGCCGGGCCAGGAGCTTCACCACGGAGCGCTTACCGATATCTTTCGGGAGACGAAGCCCACCAACGGGTCCTATCCATAGGACTGTTGGGTACTCCCTCTACCTCCCGCGCCAAGCATGCCCAGCATCTGCGCAGCACCGCACAAACATCCGGAAGAACCGAAATGTCCCCTTCCTCAGAAGTAAGGAGTTCTACCTCCCCACCCCACCAAAACCCCAGCTCACGAACT # Right flank : GGAACGCGGGCGTCAGGCGTCGGGCTGCTTCGCGGTCCCGCCTATCAGGGCGATCCGCACACCGACCAGCAGCTCGTCCCGCGTTCCACGAGGTCGTTCCAGATACTGGAGCCTCAGCCTTAGGGCGTTTCCTTCAGATCATCTGATCGTTGGTTGATGTGTGTCGTTGACTGATGCCCAGTGGGCGAGGATCGAGCCGTTGCTGCCGGACCGGACGCGTGATCGCCGGCAGGTGATCGACGCGATCGCTTTCACGTACCGCCCCGGCACGCCGTGGACGGACTGCCCGAGTACTTCGGCTCGCGGAAGTGCGCCCACAACCGGCTGTGGAAGTGGGCCGCCGACGGCACCCGGGAGAAGCTCCTCACCTCCCTGCTCGCCCAAGCCGACACCGATGGCAACCTCGGCTGGATCGTCGCGGTCGACTCTCCACGATCGCCCGGGCTCATCAGCACGCCGCCGGGGCTCGTCAAAAGGGGCCCCGCCCGGCGAGCCCTACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 38736-39733 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSDL01000054.1 Streptomyces sp. TR1341 NODE_54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38736 29 100.0 32 ............................. GGTTACAACTTCAAGACCAAGGCTGAGCAGCA 38797 29 100.0 32 ............................. GGGCGGAAGCTCACCGAGGCCGAGCGGATGGA 38858 29 100.0 32 ............................. CACCGCCAGTTCAGGACGAAGCAGCCGATGCC 38919 29 100.0 32 ............................. GACGGATCAGATGCTTCATGGGGCTATGGCTC 38980 29 100.0 32 ............................. ACTTCCTGGACAAGCACAAGAACCCAGTCACC 39041 29 100.0 32 ............................. GCCAACCAGCGCCCACACCACCACGACAAGGC 39102 29 100.0 32 ............................. GAAGGTCGGCTCGCCGGATCTTCAGCGGTTCG 39163 29 100.0 32 ............................. ACCAACGGGATCATCAGCTTCACGGCCTGACG 39224 29 100.0 32 ............................. AGCTACACCCCTTCCCTGGTCAATGCCGGGTC 39285 29 100.0 32 ............................. GTGACGTACCACCTCTCCGAGCAGGCCGAGAT 39346 29 100.0 32 ............................. GGAGTCTCGGTCGGCGTGACCTTGTACAGGTC 39407 29 100.0 32 ............................. ATCACGAACGTGCAGCAGGCCAACCCGAACCT 39468 29 100.0 32 ............................. GCCACCGGGTCCTCAAGGACACCGTCGGCGTC 39529 29 100.0 32 ............................. GTCGACGCCGTACTCGCCGCCCCACGCCTCCC 39590 27 93.1 32 ........--................... TTGACCGCGGTCTTGACGCCCTTGCCGCCGCC 39649 29 89.7 27 .............C.......A...C... CGTGCATGTAGGTGGGCCAGGAGAGAG 39705 29 69.0 0 .C....T...T.TC.......A.C.C.T. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.2 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CGGCTCGTCGAGGCCGGCCGCAACTACGACGGTCCCGCTGACGAGGAGCCCCTCTGGTGACGGTCATCGTCCTCGCCAACTGTCCACCGGGCCTGCGGGGCTTCTTGACCCGCTGGCTGCTGGAAGTCTCCCCCGGCGTTTTCCTGGGCTCACCCTCGGCCCGGGTACGCGACATCCTGTGGGACGAGGTCCGCCAGTACCGAGGCAAAGGGCGCGCCCTACTCGCCTACCAGACAGACAACGAGCAAGGCTTCACCTTCGCGACCCACGAACACGCGTGGCACCCCACCGATCACGAGGGCCTCGTCCTCCTCAAACGCCCCTCACCCATCACGAACTCGCCAGCACCACCACGGCAGGGCTGGAGCAAGGCCGCCAAAAGACGCCGCTTCGGTAACTCCTGAAGCCTCCCCCCACCTATCAACTTGCCCCGAAATGCCCCTTCCCTCGCAAGTAAGGCACACTCCATAACCCACCAACAAAACCCCAGCTCACGAACT # Right flank : CTCTTGCGTGCAATTCTCCGTGGCTCCGCTGTAGGCAGCGGGCGTCGGCATGCGCTGCGTCGGCTCGGTCCCGGCACGCCGAACCCCGCCGTACTGTTCCTTGTGTGACCACTCTCGAACGCGCCCGCTGCGAGCTCAAGGCCCACCCCCTCGCGCTCGACGCGGCCCTCGCCGCGGCCGTTCTCGTCTGCATGGTCGCCGGCTCCCTCGCCACTCCCAAGGACGGGCAGGGCGTCACCTGGGGCACCCACGTCCCCGCGCCCCTGAGCCTGCTGCTGATGCTGCTGGCCGCCGTCGCCCTCGTCTTCCGCCGCCGCGCCCCCCGCACCGTCCTCGCCCTCACCGGCACCCTCTCCGTCGTGGAGTGCGTCACCGGCGACCCCCGCGCGCCCGTCACGATGTCCGCCGTCATCGCCCTGTACACCGTCGCCGCCACCACCGACCGCACCACCACCTTCCGCGTCGGCCTGCTCACCATGACCGTGCTGACCGCCGCCGCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 46794-46216 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSDL01000054.1 Streptomyces sp. TR1341 NODE_54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46793 29 100.0 32 ............................. AAAGCGGGCCGGACCCCCGCGTCAACGGATGA 46732 29 100.0 32 ............................. GCGCGCTCCACCCTCCAGATCGTCTCCGAGAC 46671 29 96.6 32 ..........................T.. GTGCCGGGGAAGTCCCGGGTCACGACGTCGCT 46610 29 100.0 32 ............................. GGGGGCCCGCCAGTACGGCTGTCGGCCGTGAC 46549 29 100.0 32 ............................. CGGCACTGACCTGGTCTTTTGCGGGTTCTGAG 46488 29 100.0 32 ............................. CACCTCGCCCGCTACTACAGCGGCCTGGGCGA 46427 29 100.0 32 ............................. GAGCCGGCGTCGGTCAGCCAGCTCCTGGTCGA 46366 29 100.0 32 ............................. CGTGAGCACGCGGCGCACCGGTCCTCGTACTG 46305 29 96.6 32 ............T................ ACCACACTGCGGACGGGCACAGCTACTACGTT 46244 29 75.9 0 .................A...T.CCCT.A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.9 32 GTGATCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : GACGCGGTCCGCCGACTCGGCACCCCCCTCGCGGACGACGAACTGGAACCCTCCGACCTGATCCTCCCGGCCCCGGACGCCTCCCTGGCGGAGGTCCGCCTGATGCTCAACGAGGACGGCCTGATCCCGGACTGAGCGTCCGGAACCGGGGCCCGTTCCCCGGCAGTGCGGGAGATGCGCGGAAACAGCCGTACACCGTGCTGGGGGAACCGTCGCGCAGAAGCCGCGGATCTCCTTTCGGGATCTGACTGGCGGCTGCACCTGGTCCGCACAGCGGGGAGGGTCGGCAGCCAGTGGATGCTGGCGCGAGTGCTTGCAAACACCGTCCGCACGGTGATCACACCCAACCAGCGGGCGCAGCACCGTTGAATGTTTCCGGTACGAACCCGGTCCAGCATCTACCCAGCACCGAATGAACAACAGGAAGAACCGAAATGTCCCCTTCCTGAGAAGTAATGAATTCCGCCCCCCTGCTTCACCAAAACCCCAGCTCACGAACT # Right flank : TTAGCTGTCGCGGGCGGTCGGGTGAATGGGCGCAAGGTCGGACCTTGGATGGCAGGGCTCGTACTCGCAACAGGGAGGCGCGCATGTTCGCGCGGGAGCGGGCGGGGTGTCACCTGGGAGCAGTCGAGGGAGCCGTGCCGTCAGCAGTCAGGCGATGAGGAGATCCGTGTAGTCGACGAACGTGGTGCTGACGTCATCGATGTCCGCCACGAGACGCAGATGCCCACCCAGAGCCGCGATGTAGGCGGCGATGGACTCGACCTGCATCCGGTCGATGTCGCCGTTCTCCATCTGCGAGACCCGGACCTGCGAGACACCCATCCTGTCGGCCACCTCCGTCTGGGTCAGGCCGCGTCGGCGGCGGAGCTCGGCCAGATGGTGCCCCAACGTGGCCGCCTCCCGGGACGCACGGGCTGCCGCGACGCGTTCGGGCGCGTCGATCCCCGGATCCTCCGACCGCCTGGCGTCGAGCGACGACTCCCACCGGTAGTGCTTGCTCA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //