Array 1 1128-123 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSWT01000413.1 Escherichia coli strain IM22c NODE_413_length_1161_cov_2.359768, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1127 29 100.0 32 ............................. TTTGCTGAGTGTGCATACACACTTGAACATCA 1066 29 100.0 32 ............................. CTATCAGTAACAACCTGGTAAATATCGGTTTT 1005 29 100.0 32 ............................. TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC 944 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 883 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 822 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 761 29 100.0 32 ............................. TCAATACAACAGCAATGCTGGAGCTGGAAAAA 700 29 100.0 32 ............................. TGGTGGGATAGCTGCTCTGCCAGCGTGTCGCG 639 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATAAGGATAT 578 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 517 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 456 29 100.0 32 ............................. TTTGTTTTGATGATTTATCAGTATATGAATTG 395 29 100.0 32 ............................. ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA 334 29 96.6 32 A............................ ACCGTTGCTACACATATGATCAGGCATGTGCC 273 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 212 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 151 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAAAATCAATAATTAATAATAGGTTATGTTTAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 54243-53665 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSWT01000014.1 Escherichia coli strain IM22c NODE_14_length_54346_cov_1.335049, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54242 29 100.0 32 ............................. ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC 54181 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 54120 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 54059 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 53998 29 96.6 32 ............C................ CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 53937 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 53876 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 53815 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 53754 29 96.6 32 ............C................ CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC 53693 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : ATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAG # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //