Array 1 232472-230909 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJNO01000002.1 Streptomyces sp. 130 NODE_2_length_388344_cov_54.0112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 232471 29 100.0 32 ............................. GGTCTGGGTGCTCATGCGGTGCTCCGGTTTCG 232410 29 100.0 32 ............................. TCCCACGTCGCGGTGGCACCGGACCGGGACAG 232349 29 100.0 32 ............................. GAGATGTCGGCGCCGTCGCGGGGGTCGGTACC 232288 29 96.6 32 ............................G CAGGACGCCCACTCGATGGCCGGCCAGGCCGT 232227 29 100.0 32 ............................. GGCAACAACCTGACCGTCGGCGACGACCTTGG 232166 29 100.0 32 ............................. CACGTGTTGGAGGAGGTCACCTCCCGCTTCGC 232105 29 100.0 32 ............................. TCCCGGCGGGCGGACAGGGCGGGAATCCCGTC 232044 29 100.0 30 ............................. GTAACCAACGTTCGCCGCAGCCCGTGCGCA 231985 29 100.0 32 ............................. AGCGCCGCGATGGAGGGCTACTTCGAGGACGG 231924 29 100.0 32 ............................. GCAGCGACCGCGCCCAGGCGCCACCCTGAGTA 231863 29 100.0 33 ............................. CCCCCAGTCGGTCGCCGCAGCGCGCAGAGCGCC 231801 29 96.6 39 ............................T TTTCATTCACGCACCAAAAACAGGCGACGTGGTCAAGGA 231733 29 100.0 32 ............................. CGGTCGGCGTCCCACGTACCAAGCGGCGTCCT 231672 29 100.0 32 ............................. TCGGATGCCATGTCCCTGGTACGCGAGGCGGA 231611 29 100.0 33 ............................. AGGACCGCCACCGCGCCACTCAGGAGAACCTGG 231549 29 100.0 32 ............................. GAGCGGTACAACACGTGCCGCCCCAGCATCTA 231488 29 100.0 32 ............................. TCCCGGGACCGTCGGCAAGGGCGCCTTGTTCT 231427 29 100.0 32 ............................. TCGCGCTGGAACTGGAGCACGGCGGAGAGCAC 231366 29 100.0 32 ............................. GACGCGGTCGCGGACACATCGGCGGCCAGTAC 231305 29 100.0 32 ............................. CGGTCATACAGTCCGTCGTCCCCGAGCCGGCG 231244 29 96.6 32 ............................T TCGCGAAGCGAATTCTTTCACTGCCCCATGGA 231183 29 100.0 32 ............................. AAGTTCCAGGAGCGGAGCGTGGACCCCCGATC 231122 29 96.6 34 .......T..................... ACGGACTGCTCCGGCCGGCCGCGCTCCGGAGATC 231059 29 100.0 32 ............................. ATCGGCTCCCGGATCGTCTCGAAGATCAAGAG 230998 29 96.6 32 .........................C... GCCGCCGACCGTGAACTCCTCGCCCACCCCGT 230937 28 86.2 0 ..........-......C......CA... | A [230934] ========== ====== ====== ====== ============================= ======================================= ================== 26 29 98.8 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CACTGGAGATGCGTGAACGCTGCGAACGCTGTGAAGCGGCGTTGCTGCCGGACTCGTCCGCCCGGATATGTTCGTACGAGTGCACGTTCTGCGTGTCCTGCAGCGACGAACTGCGGCACACCTGCCCCAACTGCGGCGGTGAACTCGTCGTCCGCCCCCGCCGGGCGTAGGCACCGCTGCCGAGCAGACGGTCAGCTCAGCCGCCCAGGTCAGTGACCGTACGCGGTGGGTGAGCGCGTGGCGGGTTCGGGGCGGCCGATGGACCAGCCGCGCCGGACGAAGTGCTCGCTTGGTACGTCGGCGAACGCGGCCAGTCACCGGCTCGAACATGCCCCCTCACCGAGGGACGCGGGCGGACGGCGGTTCAGCGGCGAAAGTGCGATGACCGAGTGGCTAGGTTGCTACGCGTGCCCGCTATAGCCCTTTAGAGCGAAAGGTCGGAATGCTTGAAAGTGGTCGAGAATGGCGTGACCGCGGAGTAAAGTCGCAGGTCACGAAGA # Right flank : GCGCCCGCACCCGCCCCGTGCGTCGTCTCAGGCGTTCGCCGCGCCTGCCCGAACGGGTGGGCACCAAGCCCCCGCAGGCCCCAGGGTCACCGCGCGGCCATATGGTTGAACGTGTTCAACGCGCAACGCGGTTGGCGGGAGGGGAGGTTCAGTGGCAGGCGGGTGCTACGTGCGTGTCGGGGTGGTGGCGTTCGGTTGGCTTCTGGTGGCGTGTGCCGGGCCCGCCCAGTACTACGGCGGGACCGGCGTCCATGACGTCACAGCCACCGAGGTCACCGGCGGCTGGGTGAACGCCGAGGGCGCCCGTGTCGAGTTGCGCGAGGACGGGACGGCGGCGGTCAGGAAGCTCGACGGGCAGGACTTCGCCTACGACGAGGGCTGGCGCCTCTCCGGTACGGGGGCCTGGCGGCTGGCCGACAGCGAGGGCGGGCAGGTCGTCCGGCTCGCGCTGAAGGCGCCGGCACGGGTGGACAGGCGCGCCCCTGGGACCGCCGAGGACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 238020-236741 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJNO01000002.1 Streptomyces sp. 130 NODE_2_length_388344_cov_54.0112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 238019 29 96.6 32 .T........................... CGCGCGTACCGTGCGCTCAAGCAGCAAGGCCT 237958 29 96.6 32 .T........................... ACCCCAGGCTGCTGGACGGCTACCTGTACATC 237897 29 93.1 32 .T...T....................... TGCGGGCGGAGGCTGAGCCCGCGTAGGGCGAG 237836 29 93.1 32 .T...T....................... TGGACCGGGATGCCGCGCCGGGTGAGGTGGTG 237775 29 96.6 32 .T........................... TCGCCGCCGCCGTTCACCACATCGCCACCGGG 237714 29 100.0 31 ............................. CGTCCGGGACCGTCACCCTGGACGACGAACC 237654 29 100.0 32 ............................. CAGGACGACGAGCAGCTGCACGACGACGAGCA 237593 29 100.0 32 ............................. GACGGGTCGAGGCGCTGCAGCAGGCGGCGCTC 237532 29 100.0 32 ............................. CCCTAGACATGCAGACTCGGAGTCTGCATCAT 237471 29 100.0 32 ............................. CATCGCGATGGCGCTCTGGACCCGGAACAGCA 237410 29 100.0 32 ............................. AGGCCGACGGCGTACAGGCCGTCGCCGGAGTC 237349 29 100.0 32 ............................. GGCCAGGCATCGGGCGTACGACGGCGGGTGGG 237288 29 100.0 61 ............................. ACGTCCGCCTGGAGCACCTGACACCCCCGGTCGCGCTCCCCGCACGCGCAGCCGTCGCGAT 237198 29 93.1 32 CT........................... GCACCGGGTGGAGGTGCGGCCCCACTCCCGTC 237137 29 93.1 32 CT........................... GGGGTGGTCGGCGGCCTGGTGCAGCAGGCCCG 237076 29 89.7 32 CT...T....................... AGCTCCGAGATGAAGTGCACGCGCCCTCCTAG 237015 29 93.1 32 CT........................... CACGCGAGCAAGTACGGCGGGGCGTTGGCCAG 236954 29 93.1 32 CT........................... GCTCGAACTGCTGCGCCGCATGGCATGGATGA 236893 29 93.1 32 CT........................... TGCACCTCAGCCACCAGCTCCGGCACGTCCGT 236832 29 93.1 33 CT........................... CCCGGTGCCCGACTTGCTACGCCGTGACGCCCA 236770 29 72.4 0 T..........G.T..T.A...C....AG | C [236753] ========== ====== ====== ====== ============================= ============================================================= ================== 21 29 95.1 34 GCGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : AGGCGGAACCGCCGGGTATCACGAGCTCGTACATCGGCAACACCCGTGCGTCGAGGGTGAGTACGCAGTTGAGGTGGAATCCCATGAACAGCATCCTCGCGCACGCCCCCGAAGGAGCCCCCTCCGATGACCGCGACCATCCGCCCCGCCCGGACCTGATCGAGGGCAGCGAACGCCTCTACGGAGCCCCGGAGCTCCAGCCCCGCACGAAACGTCGCACGTACGTGAGTGAACCGTGGCGCGGGAACGGCCTCGGGGCGCGCTCGACGGCGGAACTTCGCGCGGTGGCGCTGGGCCGGGAGGGGTGCGGCCGGGTGGAGTGGACGGCGGATGCGGAAGACCCGGGGCGGGGTGAGGTGGAGCGAACGGGACGCGGAAGTGAGGGCGTTGGCCTACGCTGGGCGCGTATGCCTGCTGTGTGAGCGTTGAGGCGGTTATGCCGGAGTGAGCGAAAGTGGTCAGAAATCACGCCGACACGAGATAAAGCCGCAGGTCACAAA # Right flank : CGACCAACGCGCAGGCCTCGCCAGGCCTCACCATGGAGGCCCCACGTACCCTGGCCGCCATGTTCGCCCGCCCTGATACCCACCCCACGCCACCCCTCACCCTCCACCCCCTCACCTTCGCCCCCGACGAGATCGGCGAGGTCGTCGCCCTTTACGCCAGTAACCCCGCCTACTGGCGCGCGGCAGGCGAGTACGACCCCCGGGACATCCAGGCGGCGAAGGTTGAAGCGGATCTCAGAGGGGAAGCCGCCACGGAGGGCGGTGAGGTGTTGCTTGCCCGGGACGGGGAAGGGCGCCTCGCGGGGGTCGTCTGTCTGCTCGACCGGCATCCGAAGGACGGCCTGCCGTGGATCGGGCTGCTCATGGTGGACGGACACTCCCGCCGTACGGGGCTCGGGCGGCGGCTCGCCGGGCTGGTCGAGGAGCGGTTTCGGGCCGAGCAACGGAGCGGCATCCGGCTCGCCGTACTTGAGAACAACCCGGACGCCCTCGCCTTTTGG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //