Array 1 195-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEQK01000083.1 Acinetobacter baumannii strain ARLG-1860 PR378_NODE_34.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 194 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 134 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 74 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AAAGTTTCAAAAAAACAAATCACTATGACGACGATTAGACATCGCCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5285-7467 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEQK01000083.1 Acinetobacter baumannii strain ARLG-1860 PR378_NODE_34.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5285 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 5345 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 5405 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 5465 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 5525 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 5585 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 5645 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 5705 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 5765 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 5825 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 5885 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 5945 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 6005 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 6065 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 6125 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 6185 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 6245 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 6305 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 6365 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 6425 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 6485 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 6545 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 6605 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 6665 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 6725 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 6785 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 6845 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 6905 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 6965 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 7025 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 7085 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 7145 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 7205 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 7265 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 7320 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 7380 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 7441 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 98.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 26215-22885 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEQK01000113.1 Acinetobacter baumannii strain ARLG-1860 PR378_NODE_58.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26214 29 86.2 31 ....G.......CC..............A TAGACCCTAGTGAATCTTTGTGTGAATATAA 26154 29 86.2 30 ....G.......CC..............C CTGAAATACAAATCACTGGATCAGCCAGGT 26095 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 26035 29 86.2 33 ....G.......CC..............A CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 25973 29 89.7 31 ....G.......CC............... ATGTCTTTAAATTCTGAAAAAACACTTGTTC 25913 29 86.2 31 ....G.......CC..............G AAAAAATTGAAAACTTTTTAGAAATAAATGA 25853 29 86.2 31 ....G.......CC..............G CCACACATGCCTAAAAACGCAAGTGCGCTCG 25793 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 25733 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 25673 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 25613 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 25553 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 25493 29 89.7 31 ....G.......CC............... GGTACGACAACTACGAAAAACTGACCAAAGA 25433 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 25373 29 89.7 31 ....G.......CC............... TGATTGCTAGACGGATTTTTAGGCAGATCAT 25313 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 25253 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 25193 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 25133 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 25073 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 25013 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 24953 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 24893 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 24833 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 24773 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 24713 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 24653 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 24593 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 24533 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 24473 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 24413 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 24353 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 24293 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 24233 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 24173 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 24113 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 24053 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 23993 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 23933 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 23873 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 23813 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 23753 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 23693 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 23633 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 23573 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 23513 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 23453 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 23393 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 23333 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 23273 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 23213 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 23153 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 23093 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 23033 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 22973 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 22913 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 56 29 93.9 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : CCCGCTCCGCAGCCACCCGCTTTTTTTTAAATTATACTGCTACGAACGTGTTTTTGACTATC # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //