Array 1 36517-36060 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWGL01000020.1 Streptomyces sp. SID8369 SID8369.c20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 36516 33 87.9 28 ............C................CT.T ACGTCTCCGACTCCATCGAGGTGGGCAG 36455 33 100.0 28 ................................. CGTACGGGTCACTCCCGAAGACGTACGG 36394 33 87.9 28 ................T............C.CG TGAACTCGATGCGCTGCTTCACGCTGCT 36333 33 81.8 25 ........................CGGT.A..G TGATGACGGTTCCCGGGTGAGGGCC 36275 33 90.9 28 .............................T.CT CTGGGCGTGCCAGGTCCGCGACGCGGCA 36214 33 87.9 28 ..............T...............TTC TGGTCGGCCATGGCGGGGGTTGCTCCCG 36153 33 93.9 26 .............................C..G TTCCCTGTCCAGCCCCCGCTCGGCTC AC [36123] 36092 33 90.9 0 .........A...................A..T | ========== ====== ====== ====== ================================= ============================ ================== 8 33 90.1 27 GTCCTCCCCGCCGACGCGGGGGTGTTCCGGCGA # Left flank : | # Right flank : ACGCACCGCCCTCAAGGACGACCTCCGGGTTCTCCCCGCCGAGACTGTCGTACAGGGCTGGCGCAGAGGTCGGGCCGGGCAGCCGGAGGGGGCGTGCGTCAGCTCGTCGAGGGGATGACGGTGAGGGTGGCCGTGTTGTTCGTCAGGTCGGGGTCGAAGGTGCGGACAGGGGGTTTGTAGGCGTCGTTGTAGAGGACGGCGCGGCTGGTGGCGTTCGGGATGACCTCGTCGATATGGAGGGTGAAGGGGGAGGTGTGGGCGGCGGGCTTGCCGGATTCGGTGAGGTAGGTGGGGGTGTTGCAGCGGTAGCGGGTCTCGGACTGGGACCAGCAGCTGTCGGGGGCGGCGGCGACCGAGGTGCCGACGGGGATGTCGATGTCGACGGTCGCGGCGGGTTCGCCCGCGCTGAGGGAGGCGACCCAGGCGGGGCTCGCGTTGTGGACGGTGACGGTAACGGGGACGGTGCCGCCGGCCGCGCCGGAGACGGTGGAGGCGGTCAG # Questionable array : NO Score: 3.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:-1.5, 6:0.25, 7:-0.07, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGGCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 69488-68725 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWGL01000001.1 Streptomyces sp. SID8369 SID8369.c1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 69487 30 100.0 31 .............................. TCGCCACCGTCACCACGAACTACCTGCGCAA 69426 30 100.0 32 .............................. GCCTCTGGTGCGGCCAGTCGTCCAGGTGGTGG 69364 30 100.0 31 .............................. ACCCCGACGACACCCTCAACCACACAAGAGA 69303 30 93.3 31 ............................GT ACACGTCGCCGCCGACGAGGTCACCGCCGCT 69242 30 96.7 31 .............................T ACGACGCCGGAGAATGGGTGCTGCCGGACGT 69181 30 96.7 31 .............................A TGGCGATCGACGCCATGCCCAGCTTGGCGGT 69120 30 96.7 31 .............................C ACTTCATGACCTCGCGGACGGTGGCGCCCTC 69059 30 96.7 31 ..G........................... ACGGGTTGTCGGCGAGCTTGAAATGCCATGC 68998 30 93.3 31 ..G........T.................. GGCGGCAGTTGGGCGCCTCGGTCGCCATGAC 68937 30 86.7 29 ..G.........AT...............T CGTGGGTCGGCCAGATGTCCATGGCAGGC 68878 30 93.3 31 ..C..........................A CGCTCACCATCGGGGAAATGGCCCGGCATCT A,T [68873,68875] 68815 29 86.7 31 ..G.........AT...........-.... GCGATAATGGTCGGCGTACCTGTACGACGGT 68755 30 80.0 0 ..G........C.GG......C.....T.. | T [68740] ========== ====== ====== ====== ============================== ================================ ================== 13 30 93.9 31 GTAGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : GCGTCGGGCGCGGGTTGAGCTTCGAACGTGGCGCCGGGAGGACTTCGTCGCCGACCTGGACGATCACTTGATGGACGCCCTCGGGGCCTGACGACGGGCTTCGCTCACTGCTTCCTGGCCACTCCATGGCAGGGAATGACGAGTTCCTTGAGCCGCCGAAGCTCCGGTCAGGAGTCACGTGCACGCGGGCCCTGGGGGCGCGGGCCGAGCCGGTCGGCTCAAGGCACCGGTAGTGGTCGTCGTAGTCGAAGACCTCACCGACGTCGGCCACCAACGTGTTCGCACAGCAAGCCCAGAACACAACGCCCCTGGCCGACACCTGCGGAAGGCCGGGCCGCTTCTCTTCCACCGAAGCCGGGCCGACGAGGTCGACGGCGGGCAGAATGGCATCAGCCAAGCCACGCGCATAAACCCTTTGCGACAGAAGGTTGGATATGCCGGTTTCTCAAGAAGTGAGTAAAAACCGCCACCCCGCTACCTAAAACCCCAGGTCACGAAGG # Right flank : CGGGTGTTCGTGGTGCCGTTTCGGCCGCCCGTCGTTCCGTAGACGCCCAGGGGCACTCGGCGCGGCACCGGGCCGCCCCGCCCACCCCACCCCGCTCTCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTCCTCCACCAGGGTCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCCTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGTGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCC # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 73474-72773 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWGL01000001.1 Streptomyces sp. SID8369 SID8369.c1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 73473 30 100.0 32 .............................. CGGTGACGGGGGCGGATTCCGGGCCCAGCGCG 73411 30 96.7 31 .............................T GGACCACCGCGGCCTCCGTGGCGCGCGAGAG 73350 30 100.0 31 .............................. GCCTACACAGCTACATGGCGGGTCACGAGGA 73289 30 96.7 31 .............................A CTCGTAGGGTTCACCTCCTATATTCCCCCTA 73228 30 93.3 31 ...........G.................A TGGATGTGGCGACGGGCCCGGAGGGGTGGGA 73167 30 90.0 31 ...........G................TA CGGGATGGTGCCCCGCAGGGTGCCGATGCCG 73106 30 93.3 31 ...........G.................T GAATGGACACTGCCTACACACCCCCGGCGCG 73045 30 86.7 31 .T......T..G.................A CCGCCCACACCTCGGCGCAGAGCGGGGCGGA 72984 30 90.0 31 .T.........G.......A.......... TTCCGTCGCCGTTCGTGAAGCACTCGCCGCC 72923 30 86.7 31 .T.........G.......A........T. ACCTCGGCCTTGTAGAAGCAATCCTGTTGAA 72862 30 90.0 31 .T.........G......A........... CTCTCGGCCTCGGTGAGCAGCACGGCCAACA 72801 29 86.7 0 .T.........G.............-...A | ========== ====== ====== ====== ============================== ================================ ================== 12 30 92.5 31 GCGGTCCCCGCACACGCGGGGGTGGTCCCG # Left flank : ACCGACAAAATCCCACCCCACATCCCCAGGGCGACAGAAGCCCGATCGCCGGACTCCAAGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCCCCACAAGCCCTCCCCGACGGCCTCTGCCACCCCTGCCACCACGCCCACACTCACGGCGGCGAGCCCACCACCCCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTGCTCAAGCCCGTCTAACCCCCAGGCGATGGGTCGTTGCTGGGCAGGACGGCCACACCGCGCCCCGGGGCCGACTCCACGGAAGGCAGAGCCACGCCCCTTCCACCGAAGCCGGGACAATGAGATCTGTGGTGCGCAGAATGGCATCAGCCAAACCACACACGTGACCATTTTGCGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACATGGTAAAAACCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGG # Right flank : CGCGCCATCGCTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGCACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATCCGAGCCCCTGCCCGCCGGCCCCGATCCGGCGCTCCGGAAGGCCATAGATTCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGTAGCCGCCCTCCGCGCACGCCCGACACAACAGATCCCGGCCCCGATCGGTGTGCCGCACGGCAGTCACCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGGTCGACAGATCGGGGCTCATCCAGCACCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCGTGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGCCCGTCCGCACCGGCCGTCAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCATCGCCCCCGGTGATCGGATCACCTCG # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGTCCCCGCACACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 78369-77854 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWGL01000001.1 Streptomyces sp. SID8369 SID8369.c1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 78368 29 96.6 32 ............................T TTTGGAATGGCTCCCCCTGCTCCACCCCGTCC 78307 29 100.0 32 ............................. TGCACGGGGATCTGGAGGATGAACGAGAAGGA 78246 29 96.6 32 ........................A.... GAGCGCAAGGCCGCCCGTGCCCGCGAGCGGAA 78185 29 96.6 32 .C........................... ATCCAGCCCCGCGTCCAGGACGAGGGGCACGG 78124 29 100.0 32 ............................. TCCTCTTGCTGCCGGACCACGTACGGGGTGTC 78063 29 100.0 32 ............................. GCGCGGTTCTGCGAGCTCGACGAGGGCCACGA 78002 29 96.6 32 .........................C... TCGATCAGGGGGTGGGTGATGGCGTTGCCGGT 77941 29 100.0 32 ............................. GCCGCCGCCCTGCGGATGCTGCTCCAGGACGG 77880 27 82.8 0 ............--.A.....T...C... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : ATGGCTCCTGTGACGGACACGGGGACGGCCGACGACCGGGGAGGGGAGAGCCCTGCGCGAGCGAGCGCTGGGCAGTGGCCGCGCGATGAGCGCGGGTCCCCCGGCTGCCGGGTGGCCGAAGTTGATGCGTCGAAGTCTGGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCCGACCGATCGCGGCGGCTGGGGGCGGGGGCCGGGGCCGGGGGGCTGCCGCCAACAGTCCGGGGTACGACCGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAGACGGATCCCCCGGGGGGGGGTGCTGACCTCGGCCTACCTGGCAGCCCATTCGAAACTTGAGGCCACATATGCCCGACTCTCAAGAAGTTCCCCAGAACGACCCCTCGGCCGGATAAACCCGCAGGCCACGAAGG # Right flank : TCCACACCCCCGCCCGACTCCACCCAGCCGGGCCCCCTCCCCCATCGCGATACGCACGCGCACGCCCCCCGTCCACCCGGCAACACCGCAGGTCGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCGTGCTGTGGCCGGCCGACGAACCCTGGCCGGTCTGCACCGAGCCGCACAAGCGCAGCAGCGGATACCGCATCGCGGACGTACGACGTGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAGCGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGGCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTATCGGCGGGACGTC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 86911-87797 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWGL01000031.1 Streptomyces sp. SID8369 SID8369.c31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================== ================== 86911 30 96.7 37 .....T........................ GGACGAGCCCGCGCTGCTCCCTGCAGAGGGCGAGGGA 86978 30 80.0 31 CCACC........................T CGCCCCCGACTTCTACGGGCACAGCTACATG 87039 30 100.0 31 .............................. GCATCGAGCACCACGAGGCCTACGACCAGGG 87100 30 96.7 31 .............................T TCTCACGGACCTCCTCGCCCCACAGGACGGT 87161 30 96.7 31 .............................C GGCACCTGGCCCGGATGAACGCCTACTTCGC 87222 30 100.0 31 .............................. CGGGCTTCGAGTACACCCTCGAAATGGTCGA 87283 30 100.0 31 .............................. CGCTCGTCCGCTTTACCCTCCCCCTCCGGCA 87344 30 96.7 31 .............................T TCACGGCCGCGGGAGTCGTGTCGATGTAGCT 87405 30 100.0 31 .............................. CCGAGGGCGTGGCCACCGCGGCCATCACCCC 87466 30 96.7 90 ...........A.................. CGTACGCCTGGCTCCAGCTGGAGGGCTACGTGTGGCCCCCGCGCGCGGGGGTGGCCCTCAGGCGAACCGGAATTCGGTCTGCCCCGGCTT 87586 30 96.7 31 .............................C GGGGCTCCAGGATCCCGTAGGACACGGCCAC 87647 28 86.7 31 ...........--...........A....A TCCCAACTGCCGTCACAGCGTCAGCAGTTAC 87706 30 90.0 32 ...........A.............C...T CTCGGCGGATGACCTGGCCCTCGGGATCGAGG 87768 30 83.3 0 .......................A.CAG.A | ========== ====== ====== ====== ============================== ========================================================================================== ================== 14 30 94.3 36 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CAACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCACCGGCTCGATGCCCGGCCTCTGAAAACCAACCGACGACGGTCGGCACACACCGCAGGTTGCAACCGCCGACCTGCGCAAGCACCTCGGAAGACCGCCATACCGGCCCCGAAGGAATGGCCGCGCCCCAAGCGCACACCATCAGCCTCCGCCACCCCTCAAACCGTCGAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAAAGGGGGTAGGCACACCGCACACCGGGGTCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGGTGGCGGGCAGAATGGCATCAGCCGAATCACACCTGTGGCCACTTTGCCCCGGAGAGCGAGATATGCCGGTTTCTCAACAAGTTAGTGAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : ACGAATGGTCGCGCGGCCCGCACCGTAGCCCGGACAAGAAACAGCCCTACAGGTCACGACGTTAGGTCGTCTCCCTCAACGTCGCTTCCCCATGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTGATGTGGAAGCTGTGGTTGCCGGGGTGGTCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGGTGGTGGATGCGGTAGGGGCACAGGGCGAGGAGGACGAGCCGGTGGTGGACGCGGTGGCCGCCCGCACTCGTCGCCCACAGGAACCACAGGCTCACGGGCGGTTCGGTCTCCGCGGTCCACAGGCGGGCGGCGTGCTCGGTCGTCTCGTCGTGCTCGCCCAACTCGCACAGCACATAGGGCTTGTCGTCCAGGAGGTCTTCGGCGTCGTCGGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGGGCGTCGTCGTGCGGGAGGTTGGTGATGGCGGTGCATTG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.34, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 93859-94316 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWGL01000031.1 Streptomyces sp. SID8369 SID8369.c31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 93859 30 100.0 31 .............................. GGTCGATGAGCAGCCCGACCGGGACGAGGTG 93920 30 96.7 31 .............................C AGCTGTCCTCGCCCAGCACTTCGCCCAGCTC 93981 30 93.3 31 ........T....................G GCTCGTCGGCGGACGCGGGCATCGGGGCGGA 94042 30 96.7 31 .............................G CCTGGATGGGGGCGTGCAGCCCGTTGAACGT 94103 30 93.3 31 ............................TG GCCGCCCCGGCGGCGCCGACGAGGACTGGGT 94164 30 100.0 31 .............................. CTCGGTTGCCCTGTGCGCCTTCCTCGGCCGA 94225 30 96.7 31 .........................C.... GGGTGCCGTACTCGTTGAAGGTGTCAAGCAG 94286 30 86.7 0 ..........TC.............C...A | G [94314] ========== ====== ====== ====== ============================== =============================== ================== 8 30 95.4 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : CACCGACAAAATCCCGCCCCACCTCCCCGCAACGGCAGCAGTCGACCCGTCGGCCAAGGAACCCGCCCACGAAACCCTCGTCGAGTGCACCAACTGCCGCCGCCCAGGCCCACCGGAAGCCCTTCCTGACGGCCTCTGCCGCCCCTGCCACCGCGCCCACACCACGGGCGGCAACGACACCGGCGCACCCACCCCGGACGAGGTCGCCGCCATCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAGCCCGTCTGACTCCCCGACCACCACACCCCTCGTCGGGCAGGCCGGGCACACCGCACCCCGGGGCCCACACCTGCGAAAGACAGAGCCGTACCTCTTGCACCGAAGCCGGGCCGCCCAGTCTGGCGGCGGGCAGAATGGCATCAGCCAAACCACACGTGACCGCTCTGCGACGGAAGGTGAGATATGTCGGCTTCTCAACAACACAGCAAAAACCGCCTTCCCACCACCTAAACCCCCAGGTCACGAAGGG # Right flank : ATGGACTGCCCCGGCCGCCCCGGAAGGAATGATCGAGAATGCGACCCGCCCGATTCCAGAACTTCGCCGTAGAAGCGCTCGCCAAGGCGCCCGACGTCAAGAGCGTCGAGCCGTGGCAGGAGCCGGACCGCCCCTTCGGCGTGCCCATCCTGTTCATGAGCGGTGCCCAGATCTGGGCGGCCATCACGGCCACAGCCGCTCCCGGCGAGGACTACAAGCAGCCGGAGAACCCTGTCAGCTACGAAGCTCCCGCCGAGGTGGCGTACTCGGACCTGTATGAGGGTGGGAAGGTCACCCCACAACTGGCGGAGAAGTACCTCGCCGCAGCTTTCACGAACAGTGGCTCACCGGAGATCGAGACGGTATACGCCTACTCGGTGAAAGACCCCGCCACCGCCCACCCCGGCCTCGGCCTGCGGTTTCACAGCGAAGCCCGGATCCAGTTGCTGTTCCAGCACACCGCCCGCTCCGGCCAGGACAAGGGCAACTCACCTTTCGAC # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26022-25501 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWGL01000005.1 Streptomyces sp. SID8369 SID8369.c5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 26021 33 93.9 28 .............................AA.. TGTGGTCCACCGTGATGCGCCACCAGTC 25960 33 100.0 28 ................................. CCGCGTCCGATGCGGACGTGCTGTTCGC 25899 33 87.9 28 .............................ATTT CGAACGAGATCAAGCCCCTGTCCCGTGC 25838 33 90.9 28 ......G......................CA.. AGGCCACCGGGAAGCTGAAAGCGCAGCT 25777 33 93.9 28 ...............................CC TGCGCAACCGGGGCCTGATCGACCAGTA 25716 33 93.9 28 .............................T..G CCCGGGACTTCGCGACGTCCTCGTTGTG 25655 33 90.9 28 .............................C.CC GCCGGATGGTCCGGCGGGGCTCCGTGGT 25594 33 93.9 28 ..............................GC. GCACAACACCCTCCGTGCCGGTCTCCGA 25533 33 90.9 0 ..............................ACG | ========== ====== ====== ====== ================================= ============================ ================== 9 33 92.9 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGGCGA # Left flank : CGGAACACCCCCGCGTGGGCGGGGAGGACTCGCGGAGGGTCGCAGCCCGGCGCAGGTCCCGCGGAACACCCCCGCGTGGGCGGGGAGGACGGCCGCGTCGGCCGCCCGTGCCGCGCCGACGC # Right flank : CACCGATGAACCCGGAGCAGCGCTCCAAGTCCGGGCGCGACCGCCGAGGTGATAGTGGTCAGCCTGTCCCGTTCGCCTGAGAGGCGTTGCAAGGCTACTCCGGGAGTGCCATGTCGAGGCCAGGTCGGTTGCTGGGCGGCCATCTTGGCGCATAGCTCCTTGAGGGCTTGGCGGCCGTCGGCGAAGCGCTCCTCAGGTTCCCCAATCGTTCGCGGAGCTGCCGTTCGGCGGCGGCCTGGATCATCGGGTTGGTGTGCTGCTGCCTGGTCCAGGTGGCGTGGTGGGCGGCGATGACTTCGCGGTAGTCCTCCGGCGGATCCGCACGCCGCATCGGCGCTGCGGGTGCGGTCAAAGTGGGGACGGTTCGGCGGCCGCCGTGGCGGGGGCGGCCGCCTTTACAGGTGCGGGTGCCAGGACGTTCAGGGCGCGGACGTTCGCGGCGGGCACCTTCTCTTTGGCCGCCGCGATCAGCTTCGGCGCGCTCCAGCGTAGCTGCGTTG # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGGCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //