Array 1 105820-104203 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCA01000002.1 Salmonella enterica subsp. enterica serovar Kambole strain BCW_2709 NODE_2_length_741841_cov_4.89125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 105819 29 100.0 32 ............................. TAGTTTATATGCTGTATATACAGCACCAATTA 105758 29 100.0 32 ............................. GTTTTCATGGGGCAGGCCATCATATTCGCGTG 105697 29 100.0 32 ............................. CAAATGAAACAGCAGGCAGAGTTCCATAAAGA 105636 29 100.0 32 ............................. AGTACGCAACAATTGCAAAGGTTATGCAAGAG 105575 29 100.0 32 ............................. GGGCGTTTACGCCTGCTAACCTGGGAGCTGTC 105514 29 100.0 32 ............................. GGAGATCATGGCCTGAACCTAAAGACGGCGAG 105453 29 100.0 32 ............................. ATGGTATGGCGCGTCGAATCGTTGACGTTATA 105392 29 100.0 32 ............................. ATTTTACGTTGAGGCTAACATACTACGGCGAA 105331 29 96.6 32 ............................T GAAACCCGGTGGATACAAATTATCGGGAGAGG 105270 29 100.0 32 ............................. GTTGCGGCCAGCCTTGCGGATCAACTCATGGG 105209 29 100.0 32 ............................. TGATGACGGAGCGGAATATTATGAGATCGCAA 105148 29 100.0 32 ............................. GGCTTTTTTTATGCCCGGAGTAAATAAAATGG 105087 29 100.0 32 ............................. ATATCGAACGGGTTACGGCTGTCGGTGTAACT 105026 29 100.0 32 ............................. GTTTTCCGCCTTGGTAATGCGTTCCTGATTTC 104965 29 100.0 32 ............................. GTATTTGGCGGCGCTGGCTCGGCTTTAAAATG 104904 29 100.0 32 ............................. CTCGGCCTGCCAGATATTCCAGGTATCTTGTC 104843 29 100.0 32 ............................. CATTCGCGTTTATAGCCGCTTGTTGGTGAATT 104782 29 100.0 32 ............................. ATCGCTTATGAAAACGTTGATTTTATTCCACC 104721 29 100.0 32 ............................. TAAACACGGCACATTCCGTTCTTTTCCCAGAG 104660 29 100.0 32 ............................. CGCCAGGCGGTGGACATATTCAATTGCGGCGG 104599 29 100.0 32 ............................. AAGCCGCCGGGGATCAGGATAGCGTCCAAATC 104538 29 100.0 33 ............................. GCCTCTACCACGGAGCAAAAATGATAAGCAACG 104476 29 100.0 32 ............................. AGCCGCCGCCGGCAGCTTTCGATCTCAGGGAG 104415 29 100.0 32 ............................. GCGCGCGAGCACTCAAAAAAACGACTTGCCCG 104354 29 100.0 32 ............................. AAAACCGAAAAGACCCCGTCAGCAGCCATAGA 104293 29 100.0 32 ............................. CGGTCGCGTATCAATGGCACATGGTCGCACAT 104232 29 96.6 0 .........A................... | A [104205] ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCCAGCAATTTAACCATATAACCATCATAGGCGTGCACTTCATCCAGCAGCAGGATTTTGTCGCGCATCCCTAGCAATCGGAGCGATTGATGGCGAAAAGGCATCACCGCCATTAAGAGTTGATCCAGCGTACCTACGCCGACTTCCGCCAGCAGTGCTTTTTTGCGTGAATCTGCAAACCAGGTATGGCACTCAGTAGTCGCGTTGCCATCATCACGGGCATAATCTTCAGCTATATTTTCTGTTGGCTGCCAGATGGATTGTCGGAAAGAGTCCGACATTTCTCGCCCACCGTGTGCCAGGATGAGCGATGGCCTGGACTCATCGGTAAATAGCGCATGATAAGCCGATGCCAGGCGCTGATACATGGCGTTTGCGGTGGCCATTGTCGGCAACCCAACGTAGAGACCGTGGCCTTTATTGGCTGACATTAAACGGTGAGTCAGAATCAGCGCGGCCTCTGTTTTGCCTGCTCCGGTAACGTCTTCCAGGACAATCA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGTTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTGTCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCATCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116503-115133 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCA01000002.1 Salmonella enterica subsp. enterica serovar Kambole strain BCW_2709 NODE_2_length_741841_cov_4.89125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116502 29 100.0 32 ............................. CGTGAAGTGCTGGAAGAATGCGGGTTTGATTA 116441 29 100.0 32 ............................. CTAAACACCTTAGCGAAATCTGCCGCGCCCGT 116380 29 100.0 32 ............................. TAAAAATCCCGTGCAAATTGAATTTACCGATC 116319 29 100.0 32 ............................. CATCAAAAACAGGGGCTGGTGGTCAGGACGCA 116258 29 100.0 32 ............................. TGCGCCACCGGCAATAATGCCGATAGTTGTCG 116197 29 100.0 32 ............................. ATCTTGAAGTGCCTTCAAATCAAAATTCTTGA 116136 29 100.0 32 ............................. ATCTGAAACTTTCAGAAGTGCAATTGCATCAA 116075 29 100.0 32 ............................. AGAACTATCGGCGCTTCATGATGGCTTATGAT 116014 29 100.0 32 ............................. TTAATTATTGCCGATCATAACGTTGATGCGTC 115953 29 100.0 32 ............................. GGGGATGATTCGCCAACGGCAAAAAGAAGGGG 115892 29 100.0 32 ............................. CCAGAAACGGCGCAGGACGAATTAGAGCAAGC 115831 29 100.0 32 ............................. TGCATCGAGTAGTTTGGGAAATGCAAAATGGC 115770 29 100.0 32 ............................. GTTTTTGCATAATTTTTCGCGCCGTCCTGAAT 115709 29 96.6 32 ......A...................... GCTCACCCTCGGGCATCCGTTGACCACAATCA 115648 29 100.0 32 ............................. ATTTGAGTGGTCATAGCGACGCCCTCTGGTAG 115587 29 100.0 32 ............................. AACACGTATTACACAATATTGCAGACTAGAAT 115526 29 100.0 32 ............................. CGATAGCACCAAAAACGATATCGGGGCCAGTG 115465 29 100.0 32 ............................. ACCGCACCTATGAACTTCTGCGCCATGAACCA 115404 29 100.0 32 ............................. CATGTTTTTGAAGAAGCATTATCAGGCGTACC 115343 29 100.0 32 ............................. TCCACGCGCGGCGGCGCTCGCCTCGCGAATAA 115282 29 100.0 32 ............................. GCTGATGGGGAGGGTATGTCTGCGGGGAATTA 115221 29 100.0 32 ............................. AAACCGGCGAGCCTTTCGGCTCCCCTGCACGC 115160 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACTTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGCTCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATCATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGTCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATTATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCAGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //