Array 1 688-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAG01000001.1 Ligilactobacillus saerimneri 30a contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 687 29 100.0 32 ............................. AAAGCTAGCTTAGATCTTTGGAGTGGCAGTAT 626 29 96.6 32 ............................C CAGAGCCAAGGGAAGAACCAGATAGCCAGCAA 565 29 100.0 33 ............................. GAACACAAGCGGGGTAATTCCCCGCTTTTTTTT 503 29 100.0 32 ............................. ACCCTTGCCAACTCGTTCCATTGTCAATCCTG 442 29 100.0 32 ............................. CTTGCGGGCGCCGATTCATCTTACGCACGCAA 381 29 100.0 32 ............................. TAAAAATCAAGAAAAAAATATTCTCCCTATCC 320 29 96.6 32 ............................C CTATTAGCTCGCCTTTTTATAGCTTTTTATAG 259 29 96.6 32 ............................C TGTGGTTTACTATATAGACATAGGCAAGTGAT 198 29 100.0 32 ............................. AATTTTTTTGCTTATTTAGCCTATTAGAGGGC 137 29 96.6 32 ............................C CTGATTTTTCCTGGTCAAAAATTAGCATTATA 76 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.8 32 GTATTCCCCACATACGTGGGGGTGATCCT # Left flank : CCCGAAAAAGATGAAATTATTTCAATTGGTGCTGTTAAACGAGGAAAAACGGGGCAAAAAGAATCGTTTTTTCATATAATTGAATGTTCAAAAGTTATCCCGCCGGCTATACAGAAGTTAACAGGGTTAACAAATGAAATAGTTGAAGCGGGAGAACCATTAGTAAAAGTTTTACGGGTATTTAGAAATTTTATTGGTGACGAAAGAATTGTAGGGTATAATTTGCGCTTTGATATCGAGTTTCTAGACTATGCTTTTAAGAAAGTAAAATTAGAAAGAAAAAGTAACGAATTAGTAGATTTGCTAGCAATAGTAAAAAAGAAAAATCGCTTTCTAGATAACTATAAATTGGACACTGTACTTCAAGCATATGGGATAGAAAATAAGCAGCCGCATCAAGCACTTGAGGATGCTAAAGCAACATTTCAACTTGCAGAGAAACTAATGGAAAATTGATGTTGGTCAGAAGTGAAATGTTGATTTATAAGGGATCTGTTACT # Right flank : TGATAGTGCTTTTAACGTTGCAGACATGGCTATGTATTCCCCACATAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATACGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 139774-139237 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAG01000017.1 Ligilactobacillus saerimneri 30a contig00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 139773 36 100.0 35 .................................... TTTCACTTCTTCCACACCCCGCAATCGAATCTTTG 139702 36 97.2 36 ......A............................. GAATAGCAAGCAAAAACCGCAACATTGCCAAATTCT 139630 36 97.2 34 ......A............................. TGATAAGCGGTCATCATTGTCCTCACTATCAACG 139560 36 97.2 35 ......A............................. CGCCCGGGGGATTTACACCCCTAAAAGTCTGTTAA 139489 36 100.0 35 .................................... ATTTTCAATTACACCGTTGCTATCCTTTTCTACTT 139418 36 100.0 37 .................................... AGGTTAAAGGTTTGATACCCTCGCCCGATGCGAACGA 139345 36 100.0 37 .................................... CCAACTTTCGTCATAGTTCTCGTCATACTCCTTTCTT 139272 36 97.2 0 ..............................A..... | ========== ====== ====== ====== ==================================== ===================================== ================== 8 36 98.6 36 GATGAATGAACCTCTCCGATAAAAGGAGACGAAAAC # Left flank : ACCACTTGATGGCTTTTTATGATGAAATTTATCCGGGTTATGAATTCGGTCATAATGCAGGCTATGGAACGAAAGCACACCTCCAAGGCCTGGCTAATTATGGAGTATCACCGATTCATCGCAGAACCTTTGAACCAATCAAAACAGGTTTAGTCACGGGTAAATATAGTGGTTAAACTTGCATAGTCAATAACAGAAGTATCCTATGCATTGGACGTGTTGGTCTAATGTTGTGGGGTACTTTAATTTTTGAGCAAATTAGTCTACGTGGAGTGGCTTTATCAGCAAATAATATCTTTGATCTAAATAAAACTTCCACTAATTTTTATGTGCGAGTTGAATTTATGTATTATTTCTTGTACAGTTATAGAGTAAAGTTTAGGTAAAAACCTAGCCTGAAATTTAACCACCGATCCATGGTGTAAGTAGTTAAATGGTTAAAATTTGGGCAAGCAATATATTTAATAAAGCTTGATATAATAGTGTTTTCCCTAAGCTCT # Right flank : CTATCTGCCCGCTTATTCCGTATTGAGTGGAGCCAGGGCGATGAATGACTTTTTCTGATAAGTACATGGACTATTAAGTGACATTTTGTCGTCCAAATCTTCCTACATAAAAACGGTTGCTATGTGAATGTGCATGGCAACCGTTTGTTTTATAAGGAAGAGAGATTATGGTGCGCGAAAAGAGAAGCATTTTGCTACCAAACGATAGGCAGTGAAAATAGTTTTGTGTGTTAGTCTTAGGACGCAATTATTCTTACGCTTCTCTTTATGTTTTTATAATAGAAATTTCGTAAATTTTTTCAGAAACAATTCAAAGTCTGTTTTTTTGTACAGTACGTTTGATAACCTATACTTGTAAGCAGGAAAAGTAATTAGTCTGCGGAGGTGTGCAATGGAGAAATCAATTTATCAACAAATTTGCGATAATATAACTGACGGAATTCTTGATTGTGATTTTATCCTTCACGAGCAAGATTCCGATGATTCCGTTAAATGGGCTC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATGAACCTCTCCGATAAAAGGAGACGAAAAC # Alternate repeat : GATGAAAGAACCTCTCCGATAAAAGGAGACGAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 188456-187755 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAG01000017.1 Ligilactobacillus saerimneri 30a contig00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 188455 29 100.0 32 ............................. ATCAGCTTCCGCCTTAGCCCGTTTTGCTTGCC 188394 29 96.6 32 ............................C GAAATGGCAAATATGAAAATTAATATTGCTCA 188333 29 96.6 32 ............................C ATAAGCAACAGCATGAGCTGCTGGATATAAGT 188272 29 100.0 32 ............................. TGCTGATTGTTGAGAAGCACGTCGTTGAGCTA 188211 29 100.0 32 ............................. TGAAGCCGTTGATAATGCAATTAAGAACACTG 188150 29 96.6 32 ............................C TAGTCCTGACTTTAGCATTTACACGGATTTTC 188089 29 100.0 33 ............................. ACACCCAAAGCGGAGTTGCGGTGGCCACCTTTA 188027 29 96.6 32 ............................C TTTAGTCTATGACGCAGGTCAAGAAGCCTGGG 187966 29 100.0 32 ............................. ATAATCTCGACCTGTAATATTTGCGCCACTCC 187905 29 96.6 32 ............................C CAGCGAGGGCATCCCGGACGGTATATTATATC 187844 29 93.1 32 ...........................TA ATGTCCCACTCTGCTAGTTCTCCCGTTCGAAA 187783 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.0 32 GTATTCCCCACATACGTGGGGGTGATCCT # Left flank : CTAAGTACGTAGCTTCTAAGAATGGTAAAGTCGTTGACTTTGTTCGTTACGAAGTGGGCGAAGGTATCGAAAAGAAGGAAGAAGATTTCGCAGCTGAAGTCGCAGCCCAAATGAATATGTAATTCACTAGAAAACTAGTGTTTTATTGCTCATCCATATGTGTGTGGATGGGCTTTTTTAGTAATATTTTTGACGAAAAAGCTAGAATATTAACTTGATCTAGTGATGTCCACGAATTACTTTATAGAAAGAGTCAGACATACTTTGTAAACAAAACATGACTGATACGAAAGTTGGACCAATAATCTGGAAGATTATTTAATCGTAGATTGTGTCCTGTATAAATTTTTGCTGATTTCATCAAATTTTTTATATGTATTGGTATAATAAAAATAAAGCTGAATTACAGCGTGGAAAATCTTACTTGAATTAAGTGTTTAAGTAATGATTTTTGATACTATTAATGTCTAGAAATGCTGTACTTACAGGGATATTTTACT # Right flank : AAATAACGTTACCGAGAAAGACTTGGCAAATAGGTGTTTCTTTATGAATCTTGGAAAACCTGTGGGTGTATATATAACCAAAGGTAACAAAGATCAAATAACTAGTAGAATTAAAGTTTCAATGACTGATGATAGAAAAATGTATCATGCAGTACCAGCACCGCCTAAAGACAGAAAGAAGGGATGATTTTGAGAGTGACAAAAGGAACGTTACCTAAAGACATTATACGTAAGTATAATTGGTCCTGGGTAAATGTGACAACTGACGATGACAAAACAAGAAAAATATATCTTGTTGATGTAGATGATTCTTTTGATTTATATGATCATATTAATCTTCTTTATAATTTAGATGGTGATGATAATTATGCTAATGGTGAAATAAATTTAGAGAACGTAGTTAGAATAGAACATGTAAATTAGGTGGTTACTATTATGGTATCCCCCACATACGTGGGGGTGATCCTTTTCATTTTGGCAAGCGTCACTCCAAAAAAGAG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATACGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41754-40556 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAG01000015.1 Ligilactobacillus saerimneri 30a contig00020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 41753 29 100.0 32 ............................. ACCCCCGTGTTTGAGATAAAGAACGCCAAATA 41692 29 100.0 32 ............................. TTGGCGACAAAGTGGCGACAAAAAGGGCTAGA G [41670] 41630 29 100.0 31 ............................. TACATTCGCTTTTAGAGCCAACTGACACGGA G [41608] 41569 29 96.6 31 ............................C TAGCCCCCCATCATCCAACTTTTAAAAAGTA 41509 29 100.0 33 ............................. GATGACCGACTTTAAATATACCCCATCCTATTT 41447 29 100.0 32 ............................. TAACCGCTGGATATAAACCATTGCTTTTTCCA G [41425] 41385 29 96.6 32 ............................C GTGACTGTTTCTCGAATTTTTAAAACGGCTAA 41324 29 100.0 32 ............................. ATCATTAAATATCTGTTCAGATTTCCACATAA 41263 29 100.0 32 ............................. CATCGCCACTCAATTTAATTGGCTTGATATGG G [41241] 41201 29 100.0 32 ............................. TAACCACCGTACCAACTCGCTAATGGTTGCGG 41140 29 96.6 32 ............................C ATGTCCTGTTTCTCTCAAGACATCAATTAAGC 41079 29 96.6 32 ............................C TGGAATGCCTTCGTCAATCTGCTTGTAAATAG 41018 29 96.6 32 ............................C TCATAAACCTCTAGCGGGTTATCGTCCAGTGA G [40995] 40956 29 100.0 32 ............................. CAAGGCTTTTCTACCTGCCTCGAGTAAGTAAA 40895 29 100.0 32 ............................. GCACCTAGCATACCTGCGACGGGTCTGTGGCA 40834 29 100.0 32 ............................. GACGACAGTGACCAGCCGATGGAAGTCCTCAA 40773 29 100.0 32 ............................. ATCGTCCAGACTCGACTCCATGTCAGGGAGAA 40712 29 86.2 38 ........................GGGA. GATCCCTAAGCTTTAATTCGCCCGTATCGTTTTGCTTT 40645 29 93.1 32 .......................A....C GTGCTCAGTATGGGCCAGGACATCAGCGACCA 40584 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 20 29 98.1 32 GTATTCCCCACATACGTGGGGGTGATCCT # Left flank : GGGTGATCCTGATAGTGCTTTTAACGTTGCAGACATGGCTA # Right flank : GGCAGAGAGCCAATCGAGAAAGAATTAGAATTTATTAAAAAGGTGATGAAATAGGATGAATAGGTTAGATAAAATAAGTGATTTAATTGAGTCAATGGAAACTCAAATGGAGATTACATTTAACTATGATAATGTTCCTTATTTTTTAGAACCGGATTATATAGATAATTTTAATATAAAGGGTTGGATTCTTAATAACAATAAAAACTTCAGTAGACAGAAAATTTCTAGCACTGACTCTAAAGAAGTATTGCAGTTAGCATTATTGGAAGATGGGAAAAGCGTCCTTTCTCAATGGAAAAATTTAGATATGATAATTTATTGAAAAATTAGGTGAAATAGTATGGCAAGTTACGAACAAGTTGCTACTAAGATATTGAAATATTTTCCACACACGTGGGGGTAATTCCTTTAAGTGAGCAAGAACAACGCATTGTTATCTTGCATAAATTAAGGCACGTTGTCCTCGATAGTTGTGATCTTTCTTACTAACGCTATGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATACGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //