Array 1 73036-72581 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIAX01000007.1 Nesterenkonia halophila strain DSM 16378 Scaffold2_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 73035 29 100.0 32 ............................. GAGGCGGACATGGAAGCCAGCTACCCGTTCAA 72974 29 100.0 32 ............................. CGTGCTTCGCCTGTTTCTGCGGCGATCCCGAA 72913 29 100.0 32 ............................. CACCTCATCGGACCAGACATGCGCCACGCCGG 72852 29 96.6 32 ............................C GCGCGGAACGCGATCATCCTCCAAGCCCGCAT 72791 29 93.1 32 ...............A............C CGTCGGACGATCAGGGCGACGCCACTCGAAGC 72730 29 96.6 32 ............................C TCGCGGCCATGTGCGGCGACGTATTCGAGGGC 72669 29 93.1 32 ....G............T........... ACCATCGCCGTATGCAACCAGAAGGGCAGCGT 72608 28 86.2 0 ....-....A..C..........C..... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 95.7 32 GTGCTCCCCGCCTACGCGGGGATGAGCCG # Left flank : GGGGATGAGCCGCACCTGCGGCCTGACTGGATCGCCCGGCGCT # Right flank : AAGACACTCCACCGGATGAGGTAACGGCTGGTGTGCGCCCGCCCGAGAGGAAGAATGCGGCCAACCGCCGCTTTCCACGAATTGCCGTGCATGCTGCGCACCTCCACGGATCAGGACTGACATTCCCGCACGGTCACCATCGATTGGGTGAAGCGATGGATTGCCCCCCCTCTTGCCCGACCCACGCCAACGGGATCGATGGTCGTGCAATCAGTGCTTCAGAGACCTGCCACCGCCTCATCCACCCCTCCCACCAAGTCACTTGTGCTCCAGCTCACCCTCTGTAATAGTTATTACTAACTATTTCCTATTGGCCGCGCAGCGACGGAGAGCACACCATGTCCCAGCACACCGCCACCACCGGACCTCGCTTCGGCGTCCGCTGGTCGAGCACCCCGCCCATCGGCCAGACCCCCACTGAACCGAAGAGCATCGGCTTCCTCATCGCCCTCTGTGCCGCGCAGCTGGGGCTCTTCACCGCACTGATGGGTCCGGTGATG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCTACGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCTACGCGGGGGTGAGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 285675-289610 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIAX01000013.1 Nesterenkonia halophila strain DSM 16378 Scaffold6_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 285675 29 100.0 32 ............................. CATCATGACCCGCACACCACAACACCTGATCT 285736 29 96.6 32 ............................C GACATGATCACCGACCTTCGCTTCATGGCGGT 285797 29 96.6 32 ............................C GCGACTGCTATCGGGCGGCTGGCATCCTCCGG 285858 29 100.0 32 ............................. TGCCCTCCGAGTGTCGAACGAGTATTCGACAT 285919 29 96.6 32 ............................C TGGTACGCACCAGACGCGGACGACGACGGGTT 285980 29 100.0 32 ............................. CGTGCGTGTGCTGCCTGGGTCGTTTGCGGCGC 286041 29 96.6 32 ............................C CTTGGCGGCATGGAGGGTCCGATGGTCCCGCA 286102 29 100.0 32 ............................. ACGCGTTCAGGAGGGACATATGAGCAGCCCCA 286163 29 100.0 32 ............................. AAAATGTTCTCGGTGCCGGGCTCCAGGACCAC 286224 29 96.6 32 ............................A GCCCGTCCAGGCCGTCGATGAAGTTGAAGGCA 286285 29 100.0 32 ............................. TTCTATGACCAGTACGGGAATTGGGAGCAGAC 286346 29 100.0 32 ............................. CGCCCCCCATCTGCCGGGCCATAGCCTTGTTC 286407 29 96.6 33 ............................C CCCCTACCGCGGCTGACCGCGCACCCGCACTAC 286469 29 96.6 32 ............................C GGTGCGCCCGGCTGGATCGACTCCCGTAAATG 286530 29 96.6 32 ............................T ACACCTGCGAGCGCGCCGAAGTCACCGGCGAC 286591 29 100.0 32 ............................. TTCACGACGGCGAACTTCCCGAGGATGATGTA 286652 29 100.0 32 ............................. GCCAGCGGTCAGGGCAATGCCCTTGAAGTCGA 286713 29 100.0 32 ............................. CCGACCCAGTCCGGCAAGTCGCTGTGGAAGGC 286774 29 96.6 32 ............................C CGCACCGCCGCGAGCCTCGGTTACCACATCCA 286835 29 96.6 32 ............................A TACCCGGAGGACCACTGGCGGTTCCCTGACGA 286896 29 96.6 32 ............................C GTCAGGGTGATCTGCTCCCAATGCAACAGCAA 286957 29 96.6 32 ............................C GGGTGGGTACGCGGCCACGACTACGGGACCGG 287018 29 100.0 32 ............................. CGAGAGTCGAATACGCGTCGCGCCACGTGATC 287079 29 100.0 32 ............................. CCTCCGAGCGTGAACAGCAAGCCCAAGCCCAT 287140 29 96.6 32 ............................T TCCCGTACTGGTCATAGAACCGCTGGATGTCA 287201 29 96.6 32 ............................C CCATCGACCAGCGCCCAGACGACGAAACCGCC 287262 29 96.6 32 ............................C ACGGCTCAGACGTTGGTCGCTGATGCTCCACC 287323 29 100.0 32 ............................. TGAGTAATGATCGTCGCATCCGGTGAGGCGTT 287384 29 96.6 32 ............................C TCGTCCATGACCACACGGAAGTGCTTCGCGTC 287445 29 96.6 32 ............................C GATCTCCTCCATAGCGGCCAGGAGATGGGACC 287506 29 96.6 32 ............................T GATCACTGTCACTGTCAACGGCACCAAGTACA 287567 29 96.6 32 ............................C AGGCGACCAAACACGAACTCGGAACCGACCGC 287628 29 96.6 32 ............................C GCCGCGTGGGAGTTCGCCGCACAGTGCGGCGA 287689 29 100.0 32 ............................. AGCACCATCTCGAACCTGTGGGTTGGTCGCCG 287750 29 100.0 32 ............................. GCTTGGCAGGGCGGCAAGGAGCTCCTGGGCAA 287811 29 100.0 32 ............................. ATGTGTTCCTGCGCGGCGCAAAGTACGGGCAC 287872 29 96.6 32 ............................C GAAGCGCTCGAAGCGCAGGAGACCGCGGTAGC 287933 29 100.0 32 ............................. ACACACGCATCCGAGTTCGGGCGCTGCTGGCC 287994 29 96.6 32 ............................C CGCGCGGTACGCGTCCGCCTCCTCTCGGCACA 288055 29 96.6 32 ............................C CGGGGCACCAGGTCGGCCAACGGGTTCTCCAT 288116 29 93.1 32 .....................G......C AGTGGCGCGGGGCAAACCGCGCGAGCTGTTCA 288177 29 96.6 32 ............................T CGACAGGCACCGGCCCGCCACGCTGGGAGACC 288238 29 96.6 32 ............................C CGAAGCAGTCGGGTGCACGCCCGGTCCCGTCG 288299 29 100.0 32 ............................. CTCTCGAACGGCGAGCACGTGCTGACGGCGGA 288360 29 100.0 32 ............................. AGAACGCCGAGCTGGCCGACATGCACACGAAG 288421 29 96.6 32 ............................C CAGTGATGAAAGTCTTCTCGATGTCACGAGAG 288482 29 100.0 32 ............................. GCAGGCTTCAGAGCTTCCCAAATCTTGACCAA 288543 29 100.0 32 ............................. CTGCCAAGCCATCTCCGTCGCAGTAAGAGTCG 288604 29 100.0 32 ............................. CGGACATGGCACGCGCACTGAAGAAGCTGAAG 288665 29 96.6 32 ............................C TCTCTGGAGGTGAAGGCGCAGTTGACGCCGGA 288726 29 100.0 32 ............................. TGACTACCGGATCACCACGGAGAAGTGACGCA 288787 29 96.6 32 ............................C CGCTGGATATCCTGGCGCGCACGCGCATCCTG 288848 29 96.6 32 ............................C AATTCGCCAAATCTTCTTAGTCCACTTGACGA 288909 29 96.6 32 ............................C TTCATCCCCACCCCGTGGCCGTCGCTGAACGA 288970 29 100.0 32 ............................. ATCTCCATGATGACGACCTCGGGCACCTTGGC 289031 29 100.0 32 ............................. CAGATCCCCGGCATCATCAGCCAGGTGAAGGG 289092 29 96.6 32 ............................C GGTCCACTGCTGGGCGCCCTTCTGCACCACCA 289153 29 96.6 34 ............................C ACCTGGACGCTTGCCCACGCCCTCGCCGCAGCGT 289216 29 96.6 32 ............................C ATGCTGTTGATGTTCTGGGCGCGACCATCCTT 289277 29 100.0 32 ............................. TCCAAGGGCAAGGCCAGTACCGGCGGGTCGAA 289338 29 100.0 32 ............................. ACCCCGACCTCCTCCAGCAATTCAGAGACGCA 289399 29 100.0 32 ............................. GTGACGGTGAAGGGCGCGATGAATAGGCCCGT 289460 29 96.6 32 ............................C TCTCCGGGGGAGCTGTCGGCGACGATTGATTC 289521 29 100.0 32 ............................. TTCCTCCGTTCGAATCGGAGGTCGGCGACTGG 289582 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 65 29 98.1 32 GTGCTCCCCGCCTACGCGGGGATGAGCCG # Left flank : ATCGAGACCGTGATGACTTGAGCCTCTGGGACCCACACGGTGACGTGAAGTCTGGCGTGAACCATGGAGGCTCATCATGATGGTTCTGGTCCTGACTGCCTCCCCACCGGGCCTTCGGGGAGACCTCACGAAATGGCTGCTGGAGATCAGCCCGGGCGTCTTTGTCGGCAATGTCAACAAGCGCGTCCGCGAGAAGCTCTGGGCCCGGGTGCAAACCATGTGTCAGGAAGGACGAGCGCTGCTCGTCCATTCGAGCACCAACGAGCAACGACTCGAGTTTCATGTCCATGATCACAGCTGGCAGCCAACCGACCTCGACGGCATCACAGTCATGAAGCGCCCGACCAAGCGGCGTACTGCACAGACCCGGACCGGATGGAGCACCGCACGCGGCCAGAGGCGTGCTCGACGTGCTTCATGGATGCGCCGCTACGACGGAGGCAACGACGAAAGTGCATCTGAAACTCCCTGACTCTTGCTAACATCGCAGGTCAGGAAGT # Right flank : GCGTGGAAGGCCGGCGAGCGGGTCAACGATGAGTGTGCTCCCCG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCTACGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCTACGCGGGGGTGAGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 654-14 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIAX01000027.1 Nesterenkonia halophila strain DSM 16378 Scaffold19_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 653 29 100.0 32 ............................. GTGCGCTCCCCGTCGCGGGTGAACAGGAACCG 592 29 96.6 32 ............................G CTGCACGCCGATCTGGCCAGCGCGTCCGACCG 531 29 96.6 32 ............................G GCGAGCAATACCCCGAATGCATGGCCTGCAAC 470 29 96.6 32 ............................G CGGCGGGTGCGAGGCCCGTCGTCCAGGCGGCC 409 29 96.6 32 ............................T ACCGGCGCAACAGCGACCCCGACGACGAGGAC 348 29 93.1 32 ...T........................G CTGATGCTCGGTGAGCTGAACATGATTGAGGA 287 29 100.0 32 ............................. GAACCCGTCGACTACGGCTTTCGCGGTGGGTG 226 29 100.0 32 ............................. CCGTGCGACGTCGCCTCCTCGGTCTCCTCCTC 165 29 100.0 33 ............................. GTGCTTTCAGCTCCTCAGCGTGAGCCTGGATCT 103 29 100.0 32 ............................. CGATGCCGGTAGGCCACGAGAGCGGCCATTGT 42 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.8 32 GTGCTCCCCGCCTACGCGGGGATGAGCCC # Left flank : GATGAGCCCCAGTGTTCTGGCGAGAATCTGGAGAAGCAGCG # Right flank : AGCGCCGGCCGAGG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCTACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCTACGCGGGGGTGAGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //