Array 1 40-858 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLZL01000115.1 Streptomyces albidoflavus strain NRRL WC-3066 P220contig199.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40 28 100.0 33 ............................ GATGGTCGACCGGTTCGACGCCCGGGCCTCCGA 101 28 100.0 33 ............................ GGCGACCCTCACGGTGCCGGACGTGGTGGCGGA 162 28 100.0 33 ............................ GGACCGGTGGGAGGACGTCCTGGGCGTCGAGGA 223 28 100.0 33 ............................ GGCTATGACCTCCCCAAAGCTGAACTGGCCCGT 284 28 100.0 33 ............................ GGCCGAGGCCAACGCCGCCTCGGCCGCGATGAT 345 28 100.0 33 ............................ GCCGCAGCTCTCCGACCTGCGCGAGAGCGGGGC 406 28 92.9 33 ......GT.................... GACACCGCGCGAATGCGTTTCCGCCCTCGCTGA 467 28 100.0 33 ............................ GCCGGACAGGTCAATTTTCAATTCCCGGGGGAG 528 28 100.0 33 ............................ GCGCTATGCCGGTGCACCCGGGCCGCCGCGCCC 589 28 96.4 33 ....................C....... GTCGGTTTCGACGGTGGTGCGGTGCACGGCGAG 650 28 100.0 33 ............................ GTCGTCGCCCGGGTCGAGCGGGAGGACGGCATC 711 28 100.0 33 ............................ GACGTGCACGGCCCAGGCGACGGACGCGCGGTC 772 27 96.4 33 .................-.......... GGTCAGCCTGGTAAAGCGGGCGGCGCCTGCCCG 832 27 78.6 0 ...........A...A.-C.....GC.. | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.5 33 GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Left flank : GGGATGGCAAAGTCAGTCTGAAGGTGCAGGTGAGAAAGGG # Right flank : CAGGAACCGATGCAAGGCCGGTGCGGCAGGCAAGTGATGCCCGCAGGCGCAAGGACTGCCCATTGCCGAACGAGTGACGTTCCCAGGTTGGCCGCTGATGTCCAGCCGCCGCAAATCCGGCGGCCAAATGGCAGCGCGAGTACTAGCCACCGCCCCCGACGCCCCTCTCCACCTCCCCCAAAGCCTCCCCCCACC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGAGGGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22317-22590 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLZL01000001.1 Streptomyces albidoflavus strain NRRL WC-3066 P220contig1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 22317 30 96.7 31 .............................A AGGTGAAGGAGGGGGCCTCGTGGCTCGGCGA 22378 30 96.7 31 .............................T CGTCCCAGGTGATCGCCATGGGTGCGAACGG 22439 30 100.0 31 .............................. GCGTCAACATCTGCGACCTCGACCCCAACTG 22500 30 96.7 31 .........................C.... AGGCCGCTCCGGTCGTCACGAACATCATCGA 22561 30 80.0 0 ..............G......CAA.C...A | ========== ====== ====== ====== ============================== =============================== ================== 5 30 94.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : AAGCACCACACCCCGCAGCCCGCTACGCCACCGGCAAAGTCCGATACCAGGCGAACTGCTCGTGAGTGGGCATCCAGTGCTGGCCGCACCTGGAGCAGTACCAGCGCCAGTTGTCGGGGTCGTTGCGGAGGTAGGTCGTGTCCTTCCAGAGCCGGCCATGGATGTCCGTGTGGCAGGCCCGGTCAGGACAGGGCGGGGGAACGGGCGTGGTGCGCGGGCGAGTTGTGGTCAGCATGGGCGCCTCCGTGACTCGATGGGGTCAGGAGGGTGAAACGAGGGGGCTCGGGGCTGGGTGTGGGGCCGGGGCGAGGTGCGTTCGTTCGCGTGATGAATGGGGGATGAGGTGCGTGGGGGGGCCGGGGTCTGCTCCGCCGCCTCGGTCCGCTGCGTAGGATCTAGCGAGAACTCACGGCGAGGTGGGCATTTTGGGGCGAATATCGCTATCGGCGAAGCTTGCAGAAACTGAGGCAGGGGCGCCGTAAACCTGCTGGTCAGGGAGA # Right flank : ACCCCGCCTCACCCCGACCCGGCGCACAGCGCCGCCACCCGCCTTGCTCCCCCCACCCCCACCTCCTACCATGAATGCGCTTTCACAACGCGTGAGGCGGGTCGGTGGGCTCGGGTTCTGGATGGTCGGAGCGGGCGGGACGGGATGAGGGTAGGGGCGCGTGGGTGACGGGGTGGCGGGGACGCCGACGGTGTATGACGTGGCCGGGCGGGCGGGGGTGTCGATCGCGACCGTGTCGCGGGTGTACCGGAGTCCGGAGTCGGTGCGGGAGGCCACGCGGGAGAAGGTGCTCGTGGCCGCGCGGGAGCTGGGGTACGTGCCCAGCGGGAGTGCGCGCGGGCTGGCGAGCCGGTCGACGGGGGTGCTGGGGCTCTGCTTCCCCGACTACTCCGACCCGGACGCCGAGAGCGAGGCGGCCACGGTGGACGCCGACGACGACCACGCGTTCATGCTCTACTCCGACCAGATCATCCGGGGTATGGAGCGGGCCGCGCGACGGC # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 482-87 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLZL01000129.1 Streptomyces albidoflavus strain NRRL WC-3066 P220contig210.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 481 29 100.0 32 ............................. TTGAGCTCCAGGTCGAGCGACGGGAGTTCAGC 420 29 96.6 32 ............................T CTACGAGGCGGCATACCTGGAAGCGGACAACA 359 29 100.0 32 ............................. GTCTGGGCGGCGTGCACTCGGGCTCGGGGGCG 298 29 93.1 32 A........................C... GACGTCGACAAGTGCTACTGGCGCCTGGTGGA 237 29 82.8 32 ...T..T...T..A......C........ TCCTCGGTGGTCAGCTCCTCGCTGCCCGAGTC 176 29 86.2 32 A.......T...C...........T.... TCAGGGAGTCCTTGAAGGGTCTCCAGGAGAAA 115 29 89.7 0 ............C...T......A..... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 92.6 32 GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : GTCCTGCTCCGATCCGCAGGAGCCGCTGGGCGAGCCGGGTCGGAAGTTGGGGGCTTGGTTTCACTTGGGTGCGACGTTGCTGGGGGGTGCGCTTGAGAAGGCGGAGTCAGGTGGGGGGAAGTGGGGGAGGATGGGCGGGGCTCTTGATGGGGTCGAGGGGAGGGTTGTATGCGGCTTTCAGGGCAATTGCCGGAATCTGGCAAGCTTGCAGAGATGGGGTGTGGGGGCGGGTAAGGCCGCAGGTCATGGAG # Right flank : CAAGCGGTCGGCCGCGTGCCCCGCCTCGGCGTGCTCCGCTCCGAGGCGGCCCCCACCCCCTTCGAGTGATCCCCCACCCCCCAAGTG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49730-49518 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLZL01000218.1 Streptomyces albidoflavus strain NRRL WC-3066 P220contig38.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49729 29 100.0 32 ............................. GCGCGCCTGGTACTGCTCGCCGTCGCCGAGGT 49668 29 96.6 32 .............A............... CCGGCGGCCTGGACGCGGGGGCACCGGCCGAG 49607 29 96.6 32 .........................G... GGTGTGGGCCCTGGGGAGGCTTCCTGCCTCTC 49546 29 82.8 0 .............A...T.A...A.C... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GCATGAACTGACACCGGTTCTCTTCACGGTGGCGGAGGCAGGCGATCCGGTGGCGGCTGGGCTGGTTGAGCGGCTGGCGGAGGAGGTGGCCAACATGGCCGCCGTCGCGCTGGGGCGGCTGGGGTTGCTGGACTCGCCTGCGCCCGTGCTGCTGGGCGGGAGCATCCTGGCTGCGCGACGGCCTGGGCTGGATGCGGGGGTGCGGGGGGAGTTGAGCCGGCGGGCGCCACTGGCGGAGGTGCGGGTGGTGGAGGCTGCGCCTGTGCTGGGGGCGGTGTTGCTGGGGATGGATGCGGTGGGGGCGGGGGTGGGGGCTTATGGGCGGGTGCGGGGGGGGTATGGGTGAGGGGCGTGTGTTGAGGGCTGGGCGTGGGCTTCAATTGAGGGCGAGTTGAGGCTGCGAGGAGGGGCGCATTATGCGAATTTGGCGCGGAATGCCGGAGTTTTCGAAGTTGGCGTGGGCCGGGGGTTAGGCGGGGTAAACCCGCAGGTCGGAGAGA # Right flank : GAACTCGCGCGCGATAGCGGCGGACCGACCACCGCCCCGCTGATGGGCAGTCCACCCCCCTTGTGCGCCCAGGAAGTGTTGGCGTGAGAGTTCTCCGCGCAGACGGCCGCAGAGGCAGCATCACCCCGAAGCGTTTCCGTGATCGGGCTCACACGAATGGGAACTTGCCCCCTACCCTGTCAGGGTCGACCTGTACGGGAAGGACAAGGCCATGCCATCTGACACCCCTCCGGACCCGTTCGCCGACGCCCTGGCATTCGGGCAGCGGATGGAGGTGCTGCGGACCAGGCGTGGGATGAGCCGGCCTGCTCTGGCCGGGCTGCTGGGTATGTCTCCCTCGTGGGTCAAGCAGGTGGAGCGGGGCCAGATTCAGATGCCGAAGCTGCCCGTGGTTCTGCGGATCGCCGAGCTGCTGCGCGTGCGTGACCTGGCCGACCTGACGGGCGATCAGACTCCGTCGGTCGAGCTGTTCATCGGCCCCGGGCACCCCCGGCTGCCCG # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3165-2955 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLZL01000249.1 Streptomyces albidoflavus strain NRRL WC-3066 P220contig65.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3164 28 96.4 33 ........................C... CCTCCTCAGCCTCTACAACAGCACAGCCGGTGC 3103 28 100.0 33 ............................ CGGCGAGCGGCTGCTCGACGACCCCGGGTGGGT 3042 28 96.4 33 ...C........................ CATGAGGACGGGCATCCCGTGCGCCTCGGCCAT 2981 27 78.6 0 ...C.......GA.........C.-.G. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.8 33 CTGTTCCCCGCACGTGCGGGGGTGGACC # Left flank : TGGCCGAGCGGTCCTGGTCCGGTGTCGAACCGGAGTCCGGCACGGCCCCCTTCGTCCTACCGCACGGAGAAGCGCGGTTCGTCAACGCGGGGATCGTCCCGTGGCTGGACACCCATCAGCACCCTTCACTGCTACGGCCCCCACGTCACCACCTCGGCGAGCCTGACGGCCCTGAGGGGGACCTCTGCCCGGTCGAGGAAGAGCAAGGTGTTCTTCTCGACTCTGCTTCGGGGTTGGCTGGGCAGCTCACCTGTACGGAGACGGGTCGCGCAGACTGCGACCGAGACCATCCCCAGCACCCAAGGGGGTGCAAAGGCTCCGGCCGTGGCGCCGGGGTTCGCGCTCCTGCCTGCCGACGACTGGGATGGGCATGCGTGCAGTGCTCGGCGGGAAACCCCGTTAGCAGGGGAGGGATTCGGACGGCGGAGGCTAGGGTGGCGGACATGGCGAAGTTGGCGTGGAACGGCGACCTGCCGAGGTGAAGATGCAGGTCAGGAAGA # Right flank : CTCCCGGGCTCCAGTGCACTGGCTATGAGGAGCCCGCGCCCTTGAGCCCCGCAGAGCCACGGTCGTATCCCCGCCATGAGACGGAGCCACGCCCTCGACCGACCTACGCATCGACCGCGTACGAAGAGGCGAACTGGGCGCCACCGGAGAGGACTTCTGCAAAACGTGTCGGGAGCCTTCACCCCACAGCGCCCCTGCTCACCGCCGGTATGCCTAGGTGCACGACGTGGCCCGCCGAACCAATCACGTCGCACGAGCCCGTCAGGCTGTCCTCGGCCCCCCGCGCGCCCCAGTCAGAAGGGCCCACCCTCCGCTAGCCCCGCCCCGCCTCCCCGGCAAGCGGTCACGCAACCCCCGCAAACGCCTCTGCCACGTGCTCGCGGCAGGCAGCGCCCCCGCACCTGCACCCGGAAGCTCCCCTGCCCGGTCCTGCCAAGCCGGGAGCATGCCCCCGAGGCAAGCCCAGGCGAGGCCCACCGGCCGCCCCTCTCGCCCCGCCA # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACGTGCGGGGGTGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //