Array 1 123854-123291 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNFQ01000005.1 Streptococcus oralis subsp. dentisani strain UMB0079b ERR1203675.17957_1_87.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 123853 36 100.0 30 .................................... GACGGTAAAAGCGGAAGCCCTGACCCTGGG 123787 36 100.0 30 .................................... TTTATTCTCTGGAAACATAGGAAAAGCACT 123721 36 100.0 30 .................................... TTTGCTTTTTCATGGTCATAGCTGTAAAAG 123655 36 100.0 29 .................................... ACCTCTTGTTTTTGCTTTTCAATGTTCCG 123590 36 100.0 30 .................................... GCAGGGATATTTGTAAACTCATCTAAGATA 123524 36 100.0 30 .................................... CGGTAGAAAGTATTTCCATCACTTTCAACT 123458 36 100.0 30 .................................... TCAACTGCGATCTCCTGGAGTTCTAGCTCA 123392 36 100.0 30 .................................... AGGTTTTGCGTCTGGGTCTTTCTCCGTGTC 123326 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAACTCAATGACAAACCAGAAGTCAAATCCATGATTGAAAAGTTGGTAGCCACGATTACAGAATTATTGGCATTTGAGTGTTTAGAAAATGAACTAGACCTAGAATACGATGAAATCACCATTCTAGAGTTAATCGATGCGCTAGGAGTCAAAGTTGAAACTCTGAGTGACACACCTTTTGAAAAGATGCTAGAAATTGTCCAGGTTTTTAAATATCTTTCTAAAAAGAAACTCCTTGTTTTCATCAATGCATCCGCCTATCTATCAAAGGATGAGTTAGTAAATTTAATAGAGTATATCCAACTCAATCAACTGTCCGTCTTGTTTGTTGAGCCTCGGAAAATCTATGATTTTCCCCAGTATGTATTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTGATAATTGGAACCTGACGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : ACATTAAAAGCTACTCATTTTTTAAGTAGCTTTTTTCTTATTCAAGTTTACATATTAGTCATTACAATCCCATTCCCCTGTAGAAAAGCAAAACTGCGAGTCCTACGAACAAGACTAACGCTACCAGTCTTTGACTAGCGCTATACATCCGTCTTTCTCCTCTAACTGGAAAGATAACTGCTAGAAATGCGCCACCAACTGCACCTCCGATATGACCTGCTAGACTGATTCCTGGAATCAGAACACTTCCAATAATGTTAACCACAAAAAGTGTCAGATAGGATTGCCCCAACTGCTGGATATAAGGATTACGCGTTGCATAGCGAAGAACAATAATTGCAGCAAATAGCCCATAGAGAGAAGTCGAGGCTCCTGCTGCTAAGGATTTGGGACTAAATACAAAAACAAAGAGATTGCCCATCATTCCAGATAAGAGATAGAGAAAGAAAAACTTCTTGGATCCGAAAATTTCCTCTACTTGCCTACCAAGGTAATAAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 37192-37356 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNFQ01000008.1 Streptococcus oralis subsp. dentisani strain UMB0079b ERR1203675.17957_1_87.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================== ================== 37192 35 100.0 30 ................................... TGAGTAACCCACCTTAATAGCGGATTGTGT 37257 35 100.0 30 ................................... CACATCCGTAATTGTTCTGGAAAAGTCTTA 37322 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================== ================== 3 35 100.0 35 GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Left flank : GAGAAACATCATGGCAATCTCAAAAGAGAAAAAAAATGAAATCATCGCACAATATGCACGTCACGAAGGTGATACAGGTTCAGTAGAGGTTCAAGTTGCTGTCCTTACTTGGGAAATCAACCACCTTAACGAACACATCAAACAACACAAAAAAGACCACGCTACTTACCGTGGATTGATGAAAAAAATCGGTCGCCGTCGTAACTTGCTTGCATACTTGCGTAAAAACGACGTTAACCGTTACCGTGAGTTGATCAACTCTCTAGGACTTCGTCGTTAATTCAAGATACAAAGGCCGTCAAAAGCACAAAGCAAAAATAGGAAAATTGACGAAGAAACTTTAGTTTTTAGGAAATTTTATCTTTTTTGCCAAGTGCTTAGGCCGTGTTCAATTGAGCATATCTTGATAATGAAGCTACTCTAAAATGGGTAGCTTTTTTGTATGGATTTTAGCCCGGGCTCAAATCAGCTCTCTGACTTCAGAGGGCTTTTTTATTGAG # Right flank : CCTCAAATGGTATCAGCTAATTACACCATAAGGGTGCGTAGCTACTCGGCTTGAAAAGCCGAGTAGCTGTCTGCAAGCCCCTTCGGAGAGCCCACACTTTACGAAGTAAAGTATAGTATGTTATACTTTACATGGAAGTAGTCACCGAATTCCAGTTAGAAATTACTTTGTAACTACGTTTTGAGGAGGAGTAAAATGCTTTCCTATGTTCGACATTACCCACTAGCGATAGCTAAATTAATGTGTCTGTGCTCTCCTAAAATCTGCTGATTTATTACTGACTAATACAGGAGGTTTTTATGGGACAGACAATCATATCTGCTATTGGTGTTTATATTTCCACCAGTATCGATTATTTAATTATTTTATTTATTTTATTTGCACAGCTATCACAGAATAAACAAAAATGGCATATTTATGCGGGGCAATATCTAGGCACAGGCTTACTTGTAGGGGCGAGTTTAGTTGCTGCTTATGTCGTTAATTTCGTGCCTGAAGAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //