Array 1 33752-33389 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXAA01000026.1 Caloramator sp. ALD01 A3M9DRAFT_scaffold_23.24_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 33751 27 90.0 38 ---........................... CTCTTGAAAGAGTAGTACGACACTATGACGCAAGCAGA 33686 30 100.0 38 .............................. GTTGTTGCGTTTGTTAGGGCATCTTTTATTGATTCCTT 33618 30 100.0 37 .............................. AGCGAATATAAGATAATAGAAGGTAAAATAAAAGACC 33551 30 100.0 37 .............................. ATATTGATAAGCGAAATAATGAGCCATTGAATAATAT 33484 30 100.0 37 .............................. TTGTAAATATACAAATCTTGTTTAATTAATTCATTTA 33417 29 83.3 0 .................G...T-..A..G. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 95.5 38 GTTTATAGCCTACCTATAAGGGATTGAAAC # Left flank : | # Right flank : TCCAAAGTAAAGGTAATACTTTACTTTGGAGCTTAAGTTTTACAAAAAAGGTGGTGATGTAATGGATGTAAATGGAACTTTAATTTGGTATTACAACATTTGTAAAAGGGAAGTGTACTTAATGTCCCACGGTATACTCCCAAATCAAGATGATGAAAACATTGATATAGGAAGGTTTATACACGAGAACTACTATAGGAGAAACGAGAAGGAAATACGTTTTGGTAATGTAGCTTTTGATGTTATGTATCAGAACCAAAATAAACTAATAATAGGTGAAACAAAAAAGTCCTCTAAATTTTTAGAGGCATCAAAATGGCAACTTCTTTATTATTTAAAAATATTAAATGAGGCAGAAATTGAGGCAAAGGGTGTTTTACAATACCCAGAAGAAAGAAGACGTGTAGAAGTTGAGCTCACAGATGAAAATATAATAAAGTTAAAGAAGATGGAGGAGGAAATAATAAATATAATCGAATCCCCACTTCCTCCAAAAGTTG # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGCCTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 8-870 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI421442.1 Caloramator sp. ALD01 A3M9DRAFT_scaffold_21.22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================== ================== 8 30 100.0 37 .............................. CTGAAACATTTGATACTTTTAACATCTCTATTCCTCC 75 30 100.0 40 .............................. TTCCAAATATTGTTATCGATTTTAATGATTGCTCTGTAGA 145 30 100.0 38 .............................. ACCATTTAGCAAATTTTTCTTCTGTCATTTTTTGAATA 213 30 100.0 39 .............................. TGTAGCACATCAACACGGAATGGACTATAGAATTACCAA 282 30 100.0 37 .............................. TTCATATCTACAATGATAGGCTCAGTTAAACCATCAG 349 30 100.0 38 .............................. AATAATTATTTAAAATTTGAAATATAGTTTTTTCATCA 417 30 100.0 40 .............................. TCTTTTGCATTGTGTTTTGGACCTGTTGAATTGATACTGT 487 30 100.0 38 .............................. ACGATTCATCATTTAAACCATTAGGAAGTGATTCAGAC 555 30 100.0 58 .............................. TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 643 30 90.0 37 NNN........................... TTTAAAGGTCTATCTAAAAATCTTCTTTCTTCAGAAG 710 30 100.0 36 .............................. TTTTTGCAGGAGTACTTTGAATTTGATAGCAGCAAT 776 30 100.0 35 .............................. ATAGTATCTTCTGCACTTATAGTTGAACATATTGA 841 30 90.0 0 ..........................G.GT | ========== ====== ====== ====== ============================== ========================================================== ================== 13 30 98.5 40 GTTTATAGCCTACCTATAAGGGATTGAAAC # Left flank : ATCTATGG # Right flank : TCCTCGCTTTAGCGAGGTATTTTTGTGCAATAAAAGTAATATCAACCCTCCGTATAATAAAGATATAATCTTTCGGGAGGTTGATAATATGATGTGTAGAGATTGTATACATAGGAACATATGCTCATTTAGCAATATGTTAAATTATACACTCAAAAATAGTGCACTTTCATCCTGGGTAGAAGATGTTAAGTTAGAAATAGTTAATTGTAGAAATTATGAATTCGACATAAATAGTCAATATTGGAATAGAAGTTATGAAGAAATGTTTTCATTGACTGAAGAAGAATATGAGGATTCACTATATACACTTTTAAACGAAATAGATTTTTATGATGAAATATATGGTTTAAATTAAAAAAGACCCAATAGGGTCTTTTTTATACATATTTCGAAAATATTTTATCTAATACATAAAGGAATTATTACATTTATGTAGAAATCATTAATTGAACAGTAATAAATGCAGTAACATATCTTATAACTAACAAATACATAAA # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGCCTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 18300-18722 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI421442.1 Caloramator sp. ALD01 A3M9DRAFT_scaffold_21.22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 18300 36 100.0 42 .................................... GCTCTGTCTCCTGCCTTGCGGGCATCAGCAGCCAGGATATAC 18378 36 100.0 42 .................................... GTGGCTCCACTTATCTGTGGAGTATTGAGAGAAGTGTCTTAT 18456 36 100.0 43 .................................... GCCTTGCTCTTAGCCTTTTGAGCTCTTATTGCTTTCTTGTAGT 18535 36 100.0 39 .................................... ATCTGCCGTTGCAATAAGCAACATAGAATGCCTTCTTGT 18610 36 91.7 41 ...............................T.TC. CTATTCTTTACACGGCTCTTTCTAGATCCAACATTTGACTG 18687 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 6 36 98.6 42 GTAGAAAAGAATATGACCTGTTTGAAGGGATGGATA # Left flank : ATCAGGCTCTTATAATAAAGGCTAAAAGTTTCTTTAAAGAATTAAATGAACTAAAAGCTGAGAGGGAAGAATTAGATAAGAAGATAAAAAGTATTGAAAAGAAACTAAATAATGTTTTCAATATAATGAATACAGATGAAATTACTATTGAAATAGGAAAATTAAAGCGAGTAAATAAAAATGGAAATATTAGTTGGGTTGTAGAAATAGACTTTTAGTGTTTTACATATTTGACATATGAAATTATTAAGAATATAATATATGTAAATAATAGGTTTTTGTATACAGAGTTTGTATACGAAAACCTATTTGACCCCTTATACATAGGGGGGTTTTTTGAAACCTTATTAAAATTAGATATTCCAATGGGTAGAGTACATTAAAGCTTTTATACATACTCTGTATAAGACTTAATTTAACTGCTAAATTAACAACTTTTTTAGGGGTTTTGAAAATAGCCTCCTTCAGCCCAGATTTTTCAAGGCTTCAAAAAGGGTGCT # Right flank : AACTAAATTTAATATTTTTATAAGCCAAGCATTGAGAATGCTTGGCTTTTCATTTGTTGATAAATTATTTTATAAAATTGTATTGACAGGAAATAAATTCTATAGTAAAATGAAAACAAAATAAATATTGTGAGTTTAGCACTCCTATAGAATAATATATTTTTAAAATTTGAATGGTTTCGCACTATAAGTGCGTCCATTTTTAGAAAATATTCTATAGGAGGTTTTGTTTTATGGTATTAAAATTTAAATTAAAATCTTGGAATAATGTAAAAAAACTTCTTCTTTTAAATCTCCCATTAAATGTACAGGAGATTAGAAAATTAGAGGAGATTATAGCCAAAAGAGACATTGACAAAATAAACAGGTTTGTTGATGCTGTATCTTTAAATTACAATCTCTCTCCAAATTTTACAAATACCCTAAAGGAAAAGATTAAAGAAGAAGCTGAATATCTAAAGGGTATAAAGGGATTTGGAGCATATGAGAATCTAAGCAAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAAAGAATATGACCTGTTTGAAGGGATGGATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 179-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXAA01000040.1 Caloramator sp. ALD01 A3M9DRAFT_scaffold_36.37_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 178 30 100.0 37 .............................. TTTTATTTCTAACACAAATATTACATAAATTAGTATT 111 30 100.0 39 .............................. ATTCTTCTTCGGTTAAAGTATCCTTTATCACTTCTACAG 42 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 3 30 100.0 38 GTTTATAGCCTACCTATAAGGGATTGAAAC # Left flank : CAGCAGATTGGTGGAATGGTTGCACAGGGGGATATTGATATGGTTATCTTTTTAAGAGATCCACTAACTGCACAGCCCCACGAACCAGATGTTACAGCTCTTTTGAGGATATGTGATGTGCATAATGTGCCTCTTGCAACTAATCTTGGTACAGCAGAGATGTTTATAAATGCTTTAAGATAGTATTGTTGAGGTTGTTAAATAAAAAGTTAATAAGAAGAAATGGATTTTTAAAAAAGATTTTCAAAGAGTGGGAGTTTTTTTGTTGTTTTATACATAAGAATAATGGGAAAAATAGAAATCTAAAAGTTTATAGGAATATAAAAACTGTGGAGTAAGTCCTCCGCAGTTTTTTTGCTGTCGACCCCCAATCCTGCAAAAAACATAGGGGGTCGACAGCAGCCTCAAACCCTTGAAAAACCTACAAAGTTACTTTTTTATTACGAAAAAGAAACAATTTGACAATTCAGAAAAATATAGATATAATAATGGTTGAAAGG # Right flank : CGCATTTGCAACA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGCCTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 57670-57039 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXAA01000014.1 Caloramator sp. ALD01 A3M9DRAFT_scaffold_12.13_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 57669 30 100.0 38 .............................. TAATATCCTCTCCTTTAATGTAGTGTTATGTATATCCG 57601 30 100.0 38 .............................. GATGAAATTAAAAATGAACTTGTTATAGTGTTATTAGT 57533 30 100.0 36 .............................. AAAAGTATCTTTAAGTTTAGTCTTCAACTCTTTAGG 57467 30 100.0 36 .............................. ATATATCGCTTGCTTTTAACAATTCTACTATTTTCT 57401 30 100.0 35 .............................. TGAGGTCTTAATAAAAATCTTAAAAGGGAAAATAA 57336 30 100.0 37 .............................. ATATTAAAAAAGTCGCTCTAAAGCGATTTAAAGTGGG 57269 30 100.0 37 .............................. CAATATTATAGTGTTTATCCTTCAATATCAATTTTTC 57202 30 100.0 36 .............................. TTTACTGCAACTATGGAAAACTTCTTCTCCCTTAAC 57136 30 100.0 37 .............................. AACAAATCAGCAATTTCAAATGGATTATTAGTTTTAT 57069 30 96.7 0 .............................T | T [57041] ========== ====== ====== ====== ============================== ====================================== ================== 10 30 99.7 37 GTTTAAATCGGACCATATTGGAATTGAAAC # Left flank : TGATATTAATATAAAAATTGAAAAGATAAATAAAAGGTTGAATATACAAATGGGAATTTTTACTGTTATGTTTATTTTAATTTTAGTAAGCATATTTTTAAAATAAGTGCCACCAAGAGCTCCGAAAAAATGATACCTTAAAAATCGCCACCACTATATATAGTATATAAAAGATAATATGTGCAACTATATATAGTATGTTTTTAAAAATAATTTGATTTTTTTCGGAGGTCTCCCACCCAAGTGAAATGTGAATTATACATTAATTACCAAATACCGCACTTTCACTTGGGTGTTTTTGCTTATAAAATAATAGTTTTTTAAATTTTATGTAGTAGGCATAAGTTTAATATTGAAATAATGGAAAAAATAAGTTATATTAGTATATAGAGGAATAAAGTTTGTAAACCTCCTAAGGGATTTTTAATAACTGAAGGTTCCCTAAAAAAATAGGGTATTTATATTAGGAGAACCTTTGAAAAATGCGACTCCCCTAACGG # Right flank : AAAACTGCGTAGTTTTATAAAACATTTCATTAATTAAGAATTCTTGTGTAATTAATATGAAAAAAATTAATGCGAACAGGTGGGTTCTGCATTAATTTTTTAATATTAACTAAATTTGAAATCATAATAATTTAATTTATATTTTATGGGTGGGGATAAATATGTGTGATACACTTGTTGCATTGAAAAATTCAACTAAAAATGGTTCTGTGATTTTTGGAAAAAACAGCGATAGAGAAAAGAACGAACCTCATATAATAATAAGAACTGATAGAAGGAAGTATAAAAAGGGTGAAACAGTAAAGTGTACTTATATTGAAATACCACAGGCAGAGGAAACCTATGAGTGTATTTTATTTAAGCCCTCTTGGATATGGGGAGCAGAAATGGGGGTTAATGAATTTGGTGTTGTCATAGGTAATGAGGCAGTGTTTACAAAACAAAAACAAGGCCCTCCTGCACTTCTTGGAATGGACATTTTGAGGCTATCGCTTGAAAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATCGGACCATATTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 62601-61901 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXAA01000014.1 Caloramator sp. ALD01 A3M9DRAFT_scaffold_12.13_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 62600 30 100.0 37 .............................. ATTCTAAATGACGCAGTATCAACAAATGTATTCAAAG 62533 30 100.0 36 .............................. GGCTCATAATATCCAAAAAAAGGTTCAATACTACCT 62467 29 96.7 37 .............-................ TATGAAAAAATGATTTATCCTGAATGGCTAGTTGCAA 62401 30 100.0 38 .............................. TTCTATGAAGGGAGAAGATAATTATGTCTATAATGGAA 62333 30 100.0 38 .............................. ATAATTTAAGNNNNNNGNTAATTATGTCTATAATGGAA 62265 30 100.0 38 .............................. ATAATTTAAGCCGCTTGTGCTTCCAACATATATTTTAG 62197 30 100.0 35 .............................. TCAAATGAAATTAAAGAAGAAGACATCTATGCTAA 62132 30 100.0 37 .............................. ATAGGAAGTTGAATCATAACCTGAACTACCTCTTGCA 62065 30 100.0 38 .............................. CTTGATGATAGCGATTTAACACCTGTAGAGGATAATGA 61997 30 100.0 37 .............................. AAATCAAGGAAACTGTAGCAATTCAGCTCTTCTAAGT 61930 30 76.7 0 .......................AAACGTA | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 97.6 37 GTTTAAATCGGACCATATTGGAATTGAAAC # Left flank : CGAATAAATTCAAAATATTATACTTAATGTCATTATATTTTATTCTATAAATAAATGATGGTTTAGTAGAGTTATTAATAAAAAATGAAAATATTTTAACAAACTATTTTTTGTAGTATAATATAGGTAAATGGTTTATATTGTATATTTTTGTATTTTAAAAATGAATATAAAAAATTATACATGGTAGAGTAAAATTATATATTTAAAAAGAAGATTGTTATATTTCAAATTTCACCCAAGTTAAATGTGAAATTGGATATTAATTACCAAATATCACACTTTCACTTGGGTGTTTTTGCTTATAAAATAATAGTTTTTTAAATTTTATGTAGTAGGCATAAGTTTAATATTGAAATAATGGAAATAATAAGATATATTAGTATATAGAGGAATAAAGTTTGTAAACCTCCTAAGGAATTTTTAATAACTGAAGGTTCCCGAAAAAAATAGGGTATTTATATTAGGAGAACCTTTGAAAAATGCGACTCCCCTAACGG # Right flank : TTTTATATTTTGAAAGTCCCATAAAATGAAACGTTACATTATAAATACAAAGGATGGTAATATATGAGAGAAAAAACAAAATTTATAGGAGATGCACCTACAGTTTTGCCACAGAAGAAAAAACAAAATACAATAGATTTAAATCAAATTGATGACGTCAAATATAAGGTGGAAAGGATGTTAAATTCTATAGGTAAAAGTATATTTGTAAAATACTATTATGATTTTAAGGATTGTTATATGGGAAAAATTACAAACGAGAGTTTTGCTAATAAACTATTAAATGAAAATAAAAATGCAAAAAGTATAGATGGGCAAATTATTAGAATAAATAATGCAAAAAAAATATTTTCTGAGAATCTTCAAATACTTGCACTTGAAATTATAAAAAATTCTAAAAGGTTAGATGAACAAATAATTACAGAGGCAAACAAGATTATTTTAGAAGAAAGGATAATATAGTTTTATGCTCGTATTTATAATATACGGGCACTTTTTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATCGGACCATATTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 3 67701-67139 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXAA01000014.1 Caloramator sp. ALD01 A3M9DRAFT_scaffold_12.13_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 67700 29 100.0 38 ............................. AAAATAGAAATAAATCAAAAAACATTTAGTAGTAAAGA 67633 29 100.0 38 ............................. GATTCATGCAATCTTACAAAAATTTGTTTACCTGCATA 67566 29 100.0 37 ............................. TTTGAGAAATATCTTGAAACGTTGTTTTAGTACCAAA 67500 29 100.0 37 ............................. TTTGCTATTGTGTTAAGAGCAAGAAGCAGTTTAAATA 67434 29 100.0 38 ............................. TAAATACAACACTCAGATTCTTCATATGATATTCTAAA 67367 29 100.0 38 ............................. TTAGGATCCCAAATAAACCAACTTGAATTGAACCAACG 67300 29 100.0 38 ............................. AATATATAGGATATCTTTTACCTATCTTAGGAGTTTCG 67233 29 100.0 37 ............................. TAACTATTAAAAGTGTAAATTTGCATTTCATTTGGAG 67167 29 93.1 0 ..........................T.T | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 99.2 38 TTTAAATCGGACCATATTGGAATTGAAAC # Left flank : AAGCAATGGGATATTGTGTTCCAATAACATCTGGTCAGTTTTTTAGGTTTAAAAAAGAAAATAAGATAGAATATGATACAAAGTACCATATGTATTTTGTAAACTGTGAATATAATAGTGAGCTTGGCTTATTGGATGACGAAAGGGAAGATAATTTTATATAACTAAAATAGTGCTATAGTATTGTTTTTATATAATTTCCTAAGTTCGGCAGGTAATTTTATATGAACTGAACTATTTTAGTATATAATTAAAATTCTAAAAACATTGCTATATACCATTAATTTTTTATAATTACCTGTCGAATTATAATTTTTAATATAATTATAGATTTTAGCTTCAATTTTAATATTGAAATAATGGAAAAAATAAATTATATTAGTATATAAAGGAATAAAGTTTGTAAACCTCCTAAGGAATTTTTAATAACTGAAGGTTCCCGAAAAAAATAGGGTATTCATATTAGGAGAACCTTTAAAAAATGTGACTCCCCTAACGGA # Right flank : TAGTGATTAGGTATAAGTGTATGTAAAAAAATGTTGCATTTAATAATTCAACTAAAAATAGTTGCGTTTTTTTATAAAAAGGATGTATCTAACCAAGCAAAATGCTTGGTTTTTTAATTTAGTTTACAAATAGTGTTTATTGAAAAAATAAAAATTATAAACTATAATATAAATCAGTTATATGTAAAATAATTCTATTTAAAATAATAAATGTATTAAATGATTATTTATGTAATGGGAAGGGGTTTTTTATGAGTTTTCATTTAGAAATATTTAAATCAAATATTCAATTAAAAGAACAAAAGTTTCATGAGTATACTTTAAGTGGTGTTGGAAGTGTGGATAATTTTTATGAAGCAGTAGGGAAAGCACAATATGCATTATCTTCTCAGAATAAATTTGAGTTTGTATCAAGAATGGGAGATATGTATCTTTATTCATTAAAAAAATTAGAAAACATGCCTGAAATAAAAGGAGTGAAAATAGAGTATACTGGATGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAAATCGGACCATATTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //