Array 1 49033-52967 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCMM01000036.1 Ramlibacter sp. 2FC NODE_36_length_52967_cov_18.149885, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 49033 32 100.0 33 ................................ GTGGCTGGCCGAGATGACTGCCCGATTCGACAT 49098 32 100.0 36 ................................ TACTCTTACTTCTCTTCTTCTTTCTCCTTCCTCTTC 49166 32 100.0 36 ................................ AATCCAATACACGCGGATATCTACAACCCAAGACTA 49234 32 100.0 36 ................................ CCAGTCTTAATCCCTATAGTCGAGCCGATGGACCTA 49302 32 100.0 33 ................................ CAGTATGTGCTGGCGAACGAGCTGATGCGTCGT 49367 32 100.0 33 ................................ TGGTGCTGTGTGGGTAGTAGATGAGAAGACCAC 49432 32 100.0 34 ................................ CCGAACAGAAATTTAGAGACGGAAAATCCCTCAG 49498 32 100.0 34 ................................ ATCCCGGCGCGGCATTCCTGCGACAAGTGGGAGC 49564 32 100.0 36 ................................ ACACAGTTCGCTCAGGCCAAAGACGCGGCTAAGAAC 49632 32 100.0 34 ................................ TTTGCTTGCAGGCGGAATGCCAGACCAAGACTGA 49698 32 100.0 33 ................................ CGGCGATGCGCAGGCGGATTCCCCGGTGACGGT 49763 32 100.0 35 ................................ ACCGTGATGATGCCGGCCAGAACCTCAGCCGCCGT 49830 32 100.0 34 ................................ ACGAAGAACGATCTTTCCAAGGCCACGTTTGAGG 49896 32 100.0 36 ................................ ATGGACACCGCCCTGTTCCGTGACCAGGACAACAAC 49964 32 100.0 36 ................................ ACCAGCTGGCTCTGCAGGCCCAGGGCGAACACCAGC 50032 32 100.0 33 ................................ GAGCGCATCGTGATCTACCACCGGGGCGTGCGC 50097 32 100.0 32 ................................ TTGAGCTGCACGCCCTTGTCCAGGTAGGCCGC 50161 32 100.0 35 ................................ TGCGTGAGGGGGGGCCGGTACAGGTGGCTGCGCAG 50228 32 100.0 34 ................................ GCTAGCTTCAGCGGCACGATTGCTCAAGCGCCCA 50294 32 100.0 34 ................................ CTTAGGTGCATGGCCATTCCCATGCTTGTTACTG 50360 32 100.0 34 ................................ GCCTACGGCGTCGAATGCCGGGGCCTCTGCCGCG 50426 32 100.0 35 ................................ TACGCGTTGCTTGCCGACCGGTTCGGTTACTCGAT 50493 32 100.0 33 ................................ AAACAGGGATGGGAAACCCTGAGCGCCGACCAG 50558 32 100.0 34 ................................ TGCGCGAAGCGGGCGCGGGTGGCGCGGGCCTGGC 50624 32 100.0 33 ................................ ATGCGAGCCTCCATCTGCCAGCGCGCAACCATT 50689 32 100.0 35 ................................ GAGACCTACTCGGCCGAGTACACCTACCGCCTGAC 50756 32 100.0 35 ................................ GTGAGCGACGTGTTCGAGGTGGACCCCGCCGCCGT 50823 32 100.0 33 ................................ TCCACCGTCATCGACTTCTCCACCCTGATCCAG 50888 32 100.0 34 ................................ GATGTGGTCCTCGGCATCGCTGCGCCGGTCATGG 50954 32 100.0 33 ................................ TCGGCGACCTCGAAGAACTTGTAGCGCTCACGG 51019 32 100.0 34 ................................ ATGGTTCGGTCCTCGGTTGCTGAACGAACCATAG 51085 32 100.0 34 ................................ ACCCAGCCGCGCCGGCACCGCAACATCTACCCGA 51151 32 100.0 33 ................................ GTTGCCTGGCACAGCCGCGCGCCATCACAGCCG 51216 32 100.0 34 ................................ CATTCCAGCGAATCGAAGGCGCCCAAGTCACGCG 51282 32 100.0 33 ................................ AACCAAACGTGTAGCCTCCGGGGTTCCGAACTG 51347 32 100.0 34 ................................ ATGAAAACAGCCTTTCAAGTGTCTTGTTGAGGGC 51413 32 100.0 35 ................................ TACATCGCGGCTAGCGGCTACCCCGGCATGGACTG 51480 32 100.0 33 ................................ CTTAAACGATGACGGATGCGCCGACAGTCGCTG 51545 32 100.0 33 ................................ ATGGGTCAGCAGGCCATCGATGCCGGCTTGGTG 51610 32 100.0 34 ................................ GCCCCGAAGACGTCCCACTCCTGCGCCGACCACA 51676 32 100.0 33 ................................ ACGCCTTCCTCGTAGGCTGCTTCCCACAAATAG 51741 32 100.0 37 ................................ CCGATAGCTGTCCTGCGCATGCGCGGGTTGCGTGGCC 51810 32 100.0 34 ................................ GCCATGCTGCCCGTGGGCGCCGTCTTGGCCCTCG 51876 32 100.0 33 ................................ AGCAACCGGCGGGCGCCGCTGGCGATGGTGTCG 51941 32 100.0 34 ................................ TGCTGGCGGCATGGTTGCGAGCAGGACTTTGGAA 52007 32 100.0 33 ................................ ATGACGGCTCCCTCGCTTGCTCGGCCTCTGCAC 52072 32 100.0 34 ................................ TACCTGGCCACCGTGGGGGCGCTTGGATTCGTGG 52138 32 100.0 36 ................................ CGCATCGCCGAGCCGCAGCACGACGCAACGCCCCAC 52206 32 100.0 37 ................................ AGCAACTTCGAAGTGCTGGTGGCCTACCCAACTGAAT 52275 32 100.0 33 ................................ TCACGCGCAGCGACCGCTCCGACATGCTGGTGC 52340 32 100.0 35 ................................ AGCTCGCTCGCTGCCTACACCGCCTTCACCCGCGC 52407 32 100.0 32 ................................ GCCGCGGTCTGGGGGGCCGGGGCGAAGGGATC 52471 32 100.0 35 ................................ ATCACCACACCCGGGTCCGTCATGGTGCACCGCTC 52538 32 100.0 34 ................................ TCGTCCAGGCCCTCGGCATCGTAGCCATCGGCCT 52604 32 100.0 34 ................................ ACCAGTGCGCGCATGCCTTGGTAGAAGCGATCCG 52670 32 100.0 37 ................................ GGCTACTACGGCGGCATGCTCCTGGTGGCGGGTGTGC 52739 32 100.0 32 ................................ GCCGCGGTCTGGGGGGCCGGGGCGAAGGGATC 52803 32 100.0 35 ................................ ATCACCACACCCGGGTCCGTCATGGTGCACCGCTC 52870 32 100.0 34 ................................ TCGTCCAGGCCCTCGGCATCGTAGCCATCGGCCT 52936 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 60 32 100.0 34 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : CCGCCGTTTCTGTGGAAATGAGGTCGCCGCCATGATGGTGCTGGTCAGCTACGATGTGAGCACCATGGACAAGGCCGGTGCACGCCGGCTACGCCAAGTTGCCAAGGCCTGCCAGGACCATGGCCAGCGAGTGCAGTTCTCAGTGTTCGAGATTGAGGTCGACCCCGCGCAGTGGACGCTGCTGCGGGCACGCCTTGACCAACTGATCAACCCGGCGACCGACAGCTTGCGGTTCTACCACCTTGGCAAGAACTGGCAGTCCAAAGTGGAACATATAGGCGCCAAACCGGCTGTCGATATGAACGGCCCGCTGATCTTCTGATCTTGCGAAACTCAAGCGATCGGCCGTTGCCTTTGCGGTTCGCAGAACTCCAACCCATTGATTTGTATTGATTTATTGACTCAAGCGGAAACTCTCCCGCGTTGTGGTCAGTGCTCCGTCTCCGGTTCGCTGAAATCAGGCATTTTTTGCTTGTGGCACACGGAGTTATAAACGTGCG # Right flank : | # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 16-3829 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCMM01000108.1 Ramlibacter sp. 2FC NODE_108_length_5045_cov_19.046026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 16 32 100.0 34 ................................ TCGTCCAGGCCCTCGGCATCGTAGCCATCGGCCT 82 32 100.0 35 ................................ GTAGTTCTGCACACCGCCAGTGAAGCGGCGGCGGG 149 32 100.0 33 ................................ ATCGCCGCGGCAGCCACGGCGCCCCTGTGCTCG 214 32 100.0 35 ................................ AAGGACAACCAGGGCGAGCCGATGAACGAGAACGC 281 32 100.0 34 ................................ TGATTGCGCGGGATTGCGTTGGTGGCGGCACCGG 347 32 100.0 35 ................................ AAGGCTGGAGAGGAGTTCCACCACGACGGCGAGCT 414 32 100.0 36 ................................ ACCGTGACAGGGGCATTCTCTGCCGTGCCTTGGAAT 482 32 100.0 35 ................................ AACGACCTGCACGCGCGACAGGGCCTGGAGGCCGT 549 32 100.0 35 ................................ GTTCACCGGGCGCTCGCCCAGCCGCGGCTTGATGT 616 32 100.0 35 ................................ ATCGAAATGACCGCCGACCAATTCGCCGCCCTCGC 683 32 100.0 36 ................................ CGTTCGCTACCCAGGAGCACCGCCTGCGCGAAAACC 751 32 100.0 33 ................................ GTCGGGAGCATTGGCGGCCAGGATCAGGGCCAG 816 32 100.0 34 ................................ ACCAGGTCACTGCCATGGGCGTGGGCCATGTTGG 882 32 100.0 34 ................................ ACGTCCTGCTCGGGATTGACGTAGTCCCACTTCG 948 32 100.0 35 ................................ AAGGAGAACAAGCACCAGTACGGCGTGAAGGCCAG 1015 32 100.0 34 ................................ TGGGCGACGTCCACCGGTGTGGAGGGGCAGACGA 1081 32 100.0 33 ................................ GTGCCGTGGGCGATGAAGCGGTCGAGCTGCTTG 1146 32 100.0 34 ................................ TCGCATGGCCGCGGTCAGCAGCTTGATTCGCGAC 1212 32 100.0 35 ................................ GACCAACACCCGGGCGAGGTCGCAGGGATGCGCCG 1279 32 100.0 33 ................................ AATGCCGACCCCTGGGCGGCGCCGCCGCCCCCG 1344 32 100.0 36 ................................ GCCGCCGTGCAGGTGTTCCTGTGCAACTGGCGCGAC 1412 32 100.0 33 ................................ AGGCCATGCTCCACCACCCGGCGCATGCGCGCG 1477 32 100.0 35 ................................ CAGCTGCACCTGATCGCCGCCGGCATGGGGGTCAC 1544 32 100.0 34 ................................ TTCGCCAACGTGCACCTCAACGACCTGGACCAGT 1610 32 96.9 33 ..............A................. TCGGCGGCCTGCTTGCTGAACATGTCGAACTGG 1675 32 100.0 34 ................................ TTGGTCATGACGCCGGCGGCGTCGACCTCGACGT 1741 32 100.0 33 ................................ CGGGCAATCCAGCGCCTCTATGGCCCAAAACCC 1806 32 100.0 35 ................................ TCCAGTTGGCGCTGCAGCCCCTCCAGGTAGCGCTT 1873 32 100.0 36 ................................ AGGGATGGCGTCGATGGTGTCGACGGTGAATGGCGT 1941 32 100.0 33 ................................ AGGCCAGACGAACAGATCAGGCTGCGGCTGCTT 2006 32 100.0 36 ................................ GACGGCGTGTTCATCACCGTGCGCGGGAATGAGTCG 2074 32 100.0 38 ................................ GAATCCAAGTCTCTCCACCAACCACAAACCCGGCAATG 2144 32 100.0 34 ................................ GAGATGAAGCCAGCCACGACCATGCAGCGCCTAG 2210 32 100.0 33 ................................ TCGGTACGGATGATGGCCTGCTCGCCGAAGCAA 2275 32 100.0 33 ................................ CTGGGAGCCGCAGCATGAGCGACCCCACCGAAC 2340 32 100.0 35 ................................ CTCGACATCGCTTTCGCGGACCACAAAATGAACTC 2407 32 100.0 31 ................................ GTCGACAACATCACCGGAGGAATCTTGAGAG 2470 32 100.0 35 ................................ CTTTCTCATCCAGTTCGACCATCGCCACGTCAAGG 2537 32 100.0 33 ................................ GAGACCCTGCACGATACGCTGCAGGGCGCACAT 2602 32 100.0 34 ................................ CAAAGCAGCGCGTCATAGCCATCGCGCGCTGCCT 2668 32 100.0 35 ................................ TCGTTCGCCGGTTTGCGTGTGTGATGGATCAGGTG 2735 32 100.0 35 ................................ ATGGAGACGGTCGAAGAGCCGGATGGACCGTATGC 2802 32 100.0 33 ................................ CCTCGGCGATGCTCAACGTTGACGCCCTACTTG 2867 32 100.0 35 ................................ ATCACTGGGCACCTGAACGGCCAAGAGCTTGTCCC 2934 32 100.0 33 ................................ ACCCTCAAGCGCACCATTGCCCGCTGGGCTCAG 2999 32 100.0 34 ................................ CCTGTAGGTACGGCGGCCGAGACGGACACAGCTG 3065 32 100.0 34 ................................ GTAAGGAGGTGGGATGGCATCGATAAACGAAGCG 3131 32 100.0 34 ................................ TCCATTTCCTTGCTTGAGATCTCGAAATTGACCC 3197 32 100.0 34 ................................ GCCACAAGGACCTGACCCTGCGGCCCATGTACGA 3263 32 100.0 35 ................................ TCGCCTACATAGGCCGGCTCTCCGTTGGCCCAATC 3330 32 100.0 33 ................................ ACGGCGTCATGCGCGGCGCGCAGGTGTTCCGGC 3395 32 100.0 36 ................................ ACCTGCTGCGCGGTTACTTCTCGTGGGCGGCTACCG 3463 32 100.0 33 ................................ GCCTCGCGCCAGGTCGCCATGCTCGGGCCCCAC 3528 32 100.0 35 ................................ CCATACGTAGCGCTTGGACTCAACGCACCACTCGA 3595 32 100.0 34 ................................ GACAAATTACTGGCCGACGACTGAAGGAGATCGT 3661 32 100.0 37 ................................ AGGAAGCGGATTCCCTTGCGCGAGGCATCGGCCGCGA 3730 32 100.0 36 ................................ TGCTGGCCTGCGATCGCGCCCGTGGATTCATCCCAG 3798 32 84.4 0 ..............A.......T.....CGG. | ========== ====== ====== ====== ================================ ====================================== ================== 58 32 99.7 34 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : CATGGTGCACCGCTCG # Right flank : CTGTTGCTGTCGGTGGGGTCGGCGCTGGCCAGTGACGTCGCGCTCCGGCCAGCGGCGTCAGACGCGGATGATCTCGCCCTTGAGCGCGTAGAGGATGGCGATCACGTCCTTCTTCGCCTCCTCGTCCACGCCGTTCTTGTCCAGCGCCCCGACGATATCGTCCATCACCGCCAGGTACTCCTGCTCGCTGATGTTCATGCCCCTGTGGGCCTCGGGCATGCTCTTGCCGGTGTAGGCGACGGGACCGCCCGAGCCCGCGCTGAAGAACTCGAGCGCCATGCGCTTGAGGTGCGCCAGGTCCTTGACGTTTTCGAAGCGGGTCTTGACGACCGGGTTGGCCAGGTGCGCGGCGACGACATCGTCCACGAGTCGGGCCATGCCTTCGGCGCCGCCCAGGCGCTGGTACAGGGTGGTGGTCATGCTGAGTTCCTTTCGGCTGACGAGGGTGAATGGATAGAGGCCGCTCAGGCCGCCGGGCCGGCCATGCGCCAGATCAGGAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //