Array 1 60556-60167 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHFJ01000042.1 Acinetobacter baumannii strain MRSN32142 MRSN32142_MRSN32142_contig00042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 60555 29 100.0 31 ............................. AATGATGAAGGGCATAAGGTATTAGCTCATA 60495 29 96.6 31 ............................C ACATATAACCTAATTGCTGCCAATCATATCC 60435 29 96.6 31 ............................T GTTTACGAATCAGCCACTTTGCATGGTGTTA 60375 29 100.0 31 ............................. TCAGGTCAGCCATTCCTCCAAGAGTTTCACT 60315 29 89.7 31 ....C.......CC............... ATGACATACTCAACGGATTCAGGAAGTCTGA 60255 29 82.8 31 ...AC.......CC..............T CTAGAAACAGATTTCCTGATGCACCTACACT 60195 29 82.8 0 ...AC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 7 29 92.6 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : AAATTACAAAATCAGATAATTGAATTTATCTAAT # Right flank : TTGAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCCTTTCACGAATCTTGGTGGGATGGCGTCAATTAAACTAAACACATAAGCAGTTGATATAATTTAAAATAAATTTTATTCAACCAAACACCATACAAAATACCATACAAAAGCATTTTATTTAAATCGCAACTAACTCAGCTATTTTTTCCGCAACTATCTCCAACGTATCTTCAGATGTATCAAGACCACTTCTTGAAGCTAACATTGGACTGACATCTCTAAGTGCCTCGTACGTTGTATTATGTACAATTGGAATCAAACGGTTACCAGCTAGAAGAGTTGAAAGCTCTTTATCTGCTACACCTTCTTTAGGTAAGCGCGACAACAAAGCTGGTGTTACCAAAACGAGTCCAACTTTAGAATTAGCCAAACCTTTATCAATTGCTCTCATCATTGGAACACCCAAACCAAGGTCTTTTTCACTAAACCAAACTTTTACACCAGCAGCCTCTAGA # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 661-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHFJ01000043.1 Acinetobacter baumannii strain MRSN32142 MRSN32142_MRSN32142_contig00043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 660 28 100.0 32 ............................ TACTACTTTGGCAACCGTACCAACCGCACTTA 600 28 100.0 32 ............................ TGAAGTAACCATTTCAAATGTGATATCAGCTT 540 28 100.0 32 ............................ ATTTATGAAGCTCGTAGAAATCGACTTTTCCC 480 28 100.0 32 ............................ AAGTAACTCAGGCTTTAAGTCGTCAGCCATAC 420 28 92.9 32 ...AC....................... AATATAGATAAAGCCTAGTAATAGTGTAGGCA 360 28 92.9 32 ...AC....................... GTATTTGCGTCTATTTGCGTTTGATTTGTTTG 300 28 92.9 32 ...AC....................... TCTTCTGAAATTGGGGTTTTTACCAAATACTC 240 28 92.9 32 ...AC....................... TTTAGTTAGCCCAACAAGAAATTGATCAAGAA 180 28 89.3 32 ....T.......AT.............. TTTCTTTAATAGGTCTCTTTCATTGCCAATGA 120 28 89.3 32 ....T.......AT.............. ATCAGGCAAAAAAATATGGCGCTTTAAATATA 60 28 89.3 0 ....T.......AT.............. | ========== ====== ====== ====== ============================ ================================ ================== 11 28 94.5 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : CAAAG # Right flank : ATGGGCCGAAAGTTGAAAGATATTGAATGACTT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : GTTACTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25745-24278 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHFJ01000067.1 Acinetobacter baumannii strain MRSN32142 MRSN32142_MRSN32142_contig00067, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25744 28 100.0 32 ............................ AGATGCAAACCAAGACACTTCAACTAAAGATC 25684 28 100.0 32 ............................ TTCATCACCACAGCCATTTGTTCATTGGTTAC 25624 28 100.0 32 ............................ AACGTCCCCCAAACATTCACGGGAGGATTCAG 25564 28 100.0 32 ............................ TGCTGTCGTGAAATAAGTGAAATCGGCAAAAT 25504 28 100.0 32 ............................ CCTCGCTCTCGATCCTGATCAGATTGAGGAAA 25444 28 100.0 32 ............................ AATCAAACGAAACGCCGATTTATATCGAAGTA 25384 28 100.0 32 ............................ TTATACAAATCCTGATTTTGACCCTAATGCAC 25324 28 100.0 32 ............................ TAACAACGTTGGTTATTGGGAGCGTTGTCTCG 25264 28 100.0 32 ............................ TTCAGCACGACCTTTCTCGTACAAACGAAGCA 25204 28 100.0 32 ............................ GACAATATTAGTTGTACGCACATTTAAATTAG 25144 28 100.0 32 ............................ GCGTATTAAATGGCGGGAAAAACTTTGTTGCT 25084 28 100.0 32 ............................ AGTGCAGTCAAAACTACTCCACATTTTTTAAA 25024 28 100.0 32 ............................ ATTGTCTTGTTATTAACTTTTGCATTCATGTT 24964 28 100.0 32 ............................ TTTAACAACCACTTCGACGGCATCATATTCGC 24904 28 100.0 32 ............................ TTGATAAATCCCGTTTAAAGCTTGGAAATTTA 24844 28 100.0 32 ............................ TTGACGGATAGAGAGAAATGGCGACATTAAAC 24784 28 100.0 32 ............................ AACTTACTTTGGGTGTTGGCCCGATCTTTGTT 24724 28 100.0 32 ............................ CCGCAGATTTACGGATGCCTGTAACTGTCATG 24664 28 96.4 32 ...A........................ TATCATGAACATTGTTCCTTGACCCACGGACA 24604 28 92.9 32 ...A.....T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 24544 28 100.0 32 ............................ CAAATCAAAAGTGCAGTTGCTGCCTCAATAAC 24484 28 96.4 32 ...A........................ TCTTCATCTGTTACATATGAAGCAAGGATCTT 24424 28 92.9 32 ...A.......T................ GTCAAACGACAGGGCTACAAAAACTTAATCTT 24364 28 96.4 31 ...A........................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 24305 27 78.6 0 A..T........TC........C.-... | A [24301] ========== ====== ====== ====== ============================ ================================ ================== 25 28 98.1 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCCTCATTTAATAAAGTTCGAGCACTGAGATAAGGTAAATCAAGTGCTTGCTGTTTACTTAAACGAATCCCGCCTTTTTCAATATTGGAGTTAATCGTCTTTAAACTAAAGTGTACTGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : TTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTGCGAAGAATGAAGCTTGCATGGGTTGTAGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGGTCAAAGCAAGTAGCTTGTTGGCGGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30835-31042 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHFJ01000067.1 Acinetobacter baumannii strain MRSN32142 MRSN32142_MRSN32142_contig00067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30835 28 100.0 32 ............................ ATGCCGCGTGGGTAATGAACTGCTTTTTGTAC 30895 28 100.0 32 ............................ AAGCAACTCTCCACAGTAGGCGCAGTGACCGC 30955 28 100.0 32 ............................ TATAAACGATTGCTGACGCTCAGGGGCCGCAT 31015 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGGGATGAAGGAAAAAATTCTCACGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : CAACCACGTCTAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //