Array 1 2308941-2306793 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025582.1 Lacticaseibacillus paracasei strain HD1.7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2308940 36 100.0 30 .................................... ACTTAAAGCTTTGTTTTCTTCTCGTCATGC 2308874 36 100.0 30 .................................... TGGTTAAACGCTACATGTTGGATGTTTTAC 2308808 36 100.0 30 .................................... TAGAACGAGATTGAAGAATAGGACAAGCCG 2308742 36 100.0 30 .................................... TACTAAGAACAGTAGGAAACTCAGGTGGAG 2308676 36 100.0 30 .................................... AACTGTTGTTTTGGATATTAAGCAAAGTCT 2308610 36 100.0 30 .................................... TCACACGCTGACAGCAGTTGTGGATTACAT 2308544 36 100.0 30 .................................... GGCGATTACATGCTGGAAACGCGTGTCAAG 2308478 36 100.0 30 .................................... CGCTGCGCCACGCTGTCAAACGTGACCGCT 2308412 36 100.0 30 .................................... TTGATCGGCTGCCACTGCGCGGGGTCATTG 2308346 36 100.0 30 .................................... ACTATTGTTGGCAAGTTGGTTGATGCCTTG 2308280 36 100.0 30 .................................... TGTACGGTACAACTGCCCGTGGGGTACGCC 2308214 36 100.0 30 .................................... TGACCGGACGAATGCTGCGCAAGATGGTGC 2308148 36 100.0 30 .................................... AGAATCGATGATCGAGTATGCTCTAATGTC 2308082 36 100.0 30 .................................... GACACCAGCGTGGCGTTAGCGGCCACCGAT 2308016 36 100.0 30 .................................... AGAAAGCAGGACGAAAAACGGAATCAAACG 2307950 36 100.0 30 .................................... GAAGCTGGTCGTTCGGGTGATGACGATGCG 2307884 36 100.0 30 .................................... TAGAAAACGCCTCTGCGCCCGTGTCAGCAT 2307818 36 100.0 30 .................................... AGCAGTAGACCCAACAAATGTGCTATCCGC 2307752 36 100.0 30 .................................... GGTTGCTTGCGCATCTTGGTGACACCGATT 2307686 36 100.0 30 .................................... TAATTCATTTATGAGATTTTAACGGAGGTA 2307620 36 100.0 30 .................................... GTTGCGCTGGCCTAAACTGCCGATCACACT 2307554 36 100.0 30 .................................... TGGATCTCTCAAGGCAATCCAAACGACACG 2307488 36 100.0 30 .................................... CCGCTTAATGTGCCAAATTGGCTGGCACCC 2307422 36 100.0 30 .................................... CGCAGCATAGTCATAAACCGCACCGCCAAC 2307356 36 100.0 30 .................................... GGCACAAGCTTCTACATCAGTCATGCCTGC 2307290 36 100.0 30 .................................... CAAAGGTACACAGCTTGATCATGCGGACAC 2307224 36 100.0 30 .................................... GACGAATACGGCAAGGTATGCCAGGCCATA 2307158 36 100.0 30 .................................... TTTCAATGGAAGTAGTATCAGTTTCTGTTT 2307092 36 100.0 30 .................................... TGTGACAACAAAATACACTTTGGAACGTGG 2307026 36 100.0 30 .................................... AAGCCGCACACAAAGGACGCCACCGAACAA 2306960 36 97.2 30 ...........................C........ TTAGCTTCATATCATTTACATGTTGGTATC 2306894 36 100.0 30 .................................... CAAGAACAACAACAACAGCTTGATGTGACA 2306828 36 86.1 0 .......................C.....A..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.5 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGCTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATTGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTCGAACAAATCATGAAATACTGCAACGTTCATTTCGATGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAAACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGTGAACTAGATTGATTAGGAGATTGTGTGAAAACAACG # Right flank : AAACAGCAGTGATATTAATATTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAAACAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGTAGTACGACCAGTCAGACGAGCAACGCGAAGGTCAAGATTAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //