Array 1 74440-72230 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNCW01000020.1 Parabacteroides merdae strain BIOML-A20 scaffold20_size84328, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 74439 32 100.0 33 ................................ ACGAACATGAGCATAAGCTTCAGCCCATTTTTT 74374 32 100.0 34 ................................ TCAAAACTACGGAACATGATAAAGTTGCGGAGAG 74308 32 100.0 34 ................................ AGGCATATTCAAAGCATCATAGCGAACATTAACG 74242 32 100.0 34 ................................ TCGCCATCTATTGCGCTCAATGGAGAGGGTAATA 74176 32 100.0 35 ................................ ATTTTTGTTTGGATCGGGAACATCATCGGCATAAA 74109 32 100.0 34 ................................ TAGAGATCTCCTGTATGCCTTTTATTGCCAAAGC 74043 32 100.0 34 ................................ CAAGCCTTGCAATCTTTATTACAACCCTTGGAAC 73977 32 100.0 34 ................................ TATGAAAGAATATACCGTTATATGTTTTATAACA 73911 32 100.0 33 ................................ AGGAAGGTGGTGCGTTAAAGCCGTCCGGTCTTG 73846 32 100.0 34 ................................ TTGACATCACCAATTTTATTAAAAACGTTTGCCA 73780 32 100.0 35 ................................ CCTTTAATACGACATACACACCACTACCTTGAAGA 73713 32 100.0 35 ................................ ACGGCGACGAGCCTGCATAATACGGCGTTTAGCAG 73646 32 100.0 34 ................................ TGCCAATTAGAATCAACACGAGAAACGGGTATGC 73580 32 100.0 34 ................................ TTAACAATCGCCGTTTTGATCTCGAGTGTGAAGA 73514 32 100.0 34 ................................ CTCTGGTCAGAGCCCTATGGATCGCGTTTATATG 73448 32 100.0 34 ................................ AATGAATATATTTATACTTTAACAGAACGTTTGG 73382 32 100.0 34 ................................ CCCCTGAACTTAAAGTTGATGCGGATAGAAATAC 73316 32 100.0 34 ................................ CTTTAATTGATGTAGAAACGAAGATGGCTTTAAA 73250 32 100.0 33 ................................ AGAAACAATGCTACTGTAGATAAAGTAAGAATT 73185 32 100.0 34 ................................ TAATGGGGGAACCGTTTTACAAACAGCCAATATA 73119 32 100.0 33 ................................ AAGAGAAGGATTGCCTAAAATCTCATCTCTACG 73054 32 100.0 34 ................................ ACGACTGATTTAGGCCGCATTACTCCGGTATTTA 72988 32 100.0 33 ................................ ACGGATGTAGATACGATCAAAATCCAAGGCCTT 72923 32 100.0 35 ................................ TGATAAAACAGGAATAAAACACAAAAAACCGTTCC 72856 32 100.0 34 ................................ AGGATTGTATGTAAGTGTAATAAAAAGAGGTGCG 72790 32 100.0 33 ................................ CTGTTTGTCTCTTACTCCTTATTCCCAATTCAT 72725 32 100.0 35 ................................ ACGAATATAAATACGATCAAAGCCCAAGGCCTTTT 72658 32 100.0 33 ................................ TTTGAATTTACCCCCTTTAGAGGATATGGAAGC 72593 32 100.0 33 ................................ AAGGTGCTGCCTATGCTAAAACTCTCGCTGAGA 72528 32 100.0 35 ................................ GACTGTCTGAGTAATAGGATTAACAATAATGTCAC 72461 32 100.0 36 ................................ TTATATTGTACATCTATTGCCATCAAATGAATCATT 72393 32 100.0 34 ................................ AATGGACGAGCCGTTGAAAGAGCTGTCATACTTG 72327 32 100.0 34 ................................ AGTTGACAACCGGTACGCGTGTCCTTCGGAGTCT 72261 32 84.4 0 .......................C....GCCA | ========== ====== ====== ====== ================================ ==================================== ================== 34 32 99.5 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTCATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : GAAGTTGATACACGTGTCATAGCCGTCGCACCCGTAAAGGATGCGACGGTAATGTTATTGTTGTAATTCAGACACATTTCAATCCAAACGCACTATTATAACCAACTCAATCTGTAACACCTATCACATCAACAGTAGTTCCTCTACCCAAGCACCGTCCAAAACCAATCCGGCCCGTTCATCATAACACCTTCCATCTTCCAATATAAAAATCCCAGCATACACTCCCACTGTTCCCTGTTTACATAACTGTTCGAAATCCCATTTTCTAATGGATACGCTATACTGCTGTAGCTTACGTAACAACCAAAATTCCGGGCCAATCCGCTTCAGTTCCTCCAGTAAGGTTGCACCATCACCATAGCCGACCAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAACTTCTCTGCAGCAGTTGCAAACATAAAGTGCATTTCTGCAAAACCTTTATATAACAGACCTTTTATATTAGCCTTATCAAAGGTGTTACAAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 81932-80120 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNCW01000020.1 Parabacteroides merdae strain BIOML-A20 scaffold20_size84328, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 81931 32 100.0 34 ................................ GCAATGCCTCCAGGAGACGGGAGCCAATCAGAAG 81865 32 100.0 34 ................................ TAATCGGGGTACAACAACTCGAGAAATAGGTAAT 81799 32 100.0 34 ................................ CAAATAGAGCGACCAGCCTTAATACCAAAAAAAC 81733 32 100.0 35 ................................ TCCGAAGGTGGTGCTTTATCTGAATCCGGTTTGGG 81666 32 100.0 33 ................................ AACCTCAAACATTTAAGTAATGGCAAACGTTTT 81601 32 100.0 35 ................................ ACGACGCCGAGCTTGCATAATACGACGTTTAGCAG 81534 32 100.0 32 ................................ CGTCACCCGGCAATGTTGCGAAAAAAGTACTA 81470 32 100.0 35 ................................ CGTAAATACGGGAGTAATACGACCAAGGTCAGTAG 81403 32 100.0 34 ................................ ATCAGAAGGAAGTCGCTTAACGACAACTCGATGA 81337 32 100.0 33 ................................ AGGATTGAAAGAATCAAGACGCTCGCGATAAGT 81272 32 100.0 33 ................................ TTAAGGCCCAGGTGTCTGAAACTTGGTCTCGTA 81207 32 100.0 34 ................................ CAAACGACACAGTTACCATTAGACTCATAACCAG 81141 32 100.0 36 ................................ GATGATTGCTCATTCTTATCCCCTCATGCCATCAGT 81073 32 100.0 34 ................................ CTTATAGCTAAATCCACGGAATTGATTAAGCTCA 81007 32 100.0 34 ................................ CTTAATGGTAAAAAGACATATAATCGTTGGATAA 80941 32 100.0 33 ................................ GCTATCTCGCGTGTGGCGAGTATGGCTCTAAAA 80876 32 100.0 33 ................................ ATCTTAGTTTGGATCGGAAACATCATCGGCATG 80811 32 100.0 34 ................................ TTGAAAAAACATTTCGCAAACAACTGAAAAAGAT 80745 32 100.0 34 ................................ ATGAAGTTGCAAATGTTACCTTAGCATTATAGAA 80679 32 100.0 32 ................................ TGTTATGTCGCGTTTAAAGGATGCTGGTTTAA 80615 32 100.0 32 ................................ TAAAATAGCTAAAAACAACATTTGGGATATGA 80551 32 100.0 35 ................................ CCCGACCAAGCATGGACAGTCACCGGCAAAACCAA 80484 32 100.0 32 ................................ TTGTGCAGCAATGGCGCGCTTTTGGCGTCTAC 80420 32 100.0 34 ................................ ATTGCCCTCAAAAGGAATACAATAATCCCATAAT 80354 32 100.0 35 ................................ GAAATCAACCTTATAAGCATTACCGTCCTCGTCAA 80287 32 100.0 33 ................................ TTACCAGAGTGCAGGAGTTTTTTCGCAATGCCA 80222 32 100.0 39 ................................ GTCCGTTTTAGAATACAACAGTAATAATGCAACTAATAA 80151 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 28 32 100.0 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : TACTTCCAGGAGATCCCGTCTCCCCAGAGCCTGTGAAGTCATCCCACTCGTTCCCATCCGCAAGAAACCGAACAACCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGATACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTGGATGTTCGCATCCTCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTATTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCTATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACTCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //