Array 1 5020-2957 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHC010000009.1 Clostridium perfringens strain 2C21 NODE_9_length_119006_cov_117.013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 5019 29 100.0 36 ............................. TAAAAAACCTCCTAAAAAAAATTATTTATTTAATTA 4954 29 100.0 37 ............................. CCGTATACAATTAATTGTTTTCCTTTAAGAGCAGTAT 4888 29 100.0 36 ............................. ATAAGAAAAGCTCCAGTATGAGAAAGTTGAAATAAA 4823 29 100.0 36 ............................. AAATCCCCAAACTTGCATAGCATAGCGTGAGCCATA 4758 29 100.0 37 ............................. CTATACTTATTAGTAGTAGAATAATTACTATTTCCTT 4692 29 100.0 37 ............................. ACAGGAGTAGTAGTAATATTACCTTCTAAACTTTTTT 4626 29 100.0 37 ............................. TAAAATAAATATTATAGCCAACAAGGGGGGGAAGGCA 4560 29 100.0 37 ............................. TTAAAAGGAGCCAACAAAGAATTAATAAACTTCATAT 4494 29 100.0 36 ............................. GTTGATAATGTTGGTGATAGTATATGGGATAAAATA 4429 29 100.0 38 ............................. CATCCCATGCGAAAACGCACGGTTTGTCATACTCTTCC 4362 29 100.0 36 ............................. TTTTGATGATTATATTACAGTTAGTGAGAAATTGCA 4297 29 100.0 36 ............................. TGTAAAAGCGGGTGACATTATAGCCTATAGCGGTAA 4232 29 100.0 37 ............................. AAATAAAAAGAGGAGATTATATTCGATATACAGATAA 4166 29 100.0 37 ............................. TTCTTCTTTACGCCTTCTTCTCAGTCCTTCCTCAAAA 4100 29 100.0 36 ............................. TTAGAAGAAGCGTTAAGGATAGCAAAAAAGCTTAAT 4035 29 100.0 36 ............................. AAAAACTCAAAAACAGAAACAAAGGTTTAAACATTA 3970 29 100.0 37 ............................. TAAAGCCGACAAGGGGGGAAGGCATAAAAGCCATTCC 3904 29 100.0 37 ............................. GTTTTCATATAAAACATTTGTGGTTTAACACCTTTAG 3838 29 100.0 36 ............................. AAAATTTAATAATCTTAGATTCAAGAAGCCTATTCC 3773 29 100.0 36 ............................. CGCTTTCTCTTTTTAAGCCTATGTACCTCCAATCCA 3708 29 100.0 37 ............................. TATAAAAGCATATGTGTAAAATGGTTTAATGATGAAT 3642 29 100.0 36 ............................. TGTTATATACATGTTGCTCAAATTTCGCTACACCAA 3577 29 100.0 37 ............................. AACAAATCAGGATAAGCAGACCTATCATAACGATAAG 3511 29 100.0 36 ............................. GGTAAAAACGGACAGACACCTCAAATAACAATGAGA 3446 29 100.0 36 ............................. AATATGAGGGAAAAGAATTTTACAGACCTTACGCAA 3381 29 100.0 37 ............................. ACAAAACTAAAAGAACATTGATATTTTTCCATTTTTT 3315 29 100.0 37 ............................. ACTTTAAAAGAAACTATAACAAAAATAGGAAATGAAA 3249 29 96.6 37 ..................T.......... TTATTAATTCATATTTGTTTTGTTTAACTCTTTTCAT 3183 29 100.0 37 ............................. TTATTAAAAGGTGTATGACCTTTTTTAAATCTACCAT 3117 29 100.0 37 ............................. CAATGTATACAGTATGTAAAAAAAGGTGCTTATAATG 3051 29 96.6 37 ...................A......... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 2985 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ====================================== ================== 32 29 99.2 37 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGGAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTGTCAGTTGGCCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTTCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTATAACCAAGTAATATCAATAGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTTAAGGTCTACTGCAAAATCTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : AAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGATTTTTTTGTTTCAATAGCAAGTGCACCTAATGCAGATATATTTCCAACAATGCTTTGGATTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTAATACTTAATACTTCCAATATATATGATAACATTAAGCTTATTAAGTTATAAGACACTTAAATTTAAACCTCAAAAGAAAAATAAACAAGATGATTAATTTAAGTTTTATAATAAGAATTTAAAAGTAAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTAACATATACCTATTAAATTTAGAACTTTGTATTTAATAATATATGTATTTAGCAGCTTACATTTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATACATCATCATCAATTCTAGCAACAATTACCTTGTTAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //