Array 1 232006-234455 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTIX01000011.1 Actinokineospora auranticolor strain YU 961-1 Ga0180963_111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 232006 30 100.0 36 .............................. CTGCTGATCGTCGGCTCCAACGACGAAGCCGCCGAG 232072 30 100.0 35 .............................. TGGTTGGTCGAGTTCCGGCCCCGCCGGTGCTGGGA 232137 30 100.0 34 .............................. GCGGAGGCGATCCGCTACAGCCTGGACCGCTTGA 232201 30 100.0 34 .............................. TTTCGACGCGCCCACACAGACCGTGTCCGGTGCG 232265 30 100.0 36 .............................. CTCATCAGGGTCAGGGATCCACGGCAAGGGATCCGC 232331 30 100.0 34 .............................. ACGGTGCTGCGGCGCGACATCACCAGCCAGGACC 232395 30 100.0 33 .............................. GCCAGGGCGCCGCTGCGCACGACCGAGGAAGGG 232458 30 100.0 34 .............................. TGAGGTGACCGTGGGCCAGATCTACACCGCGCAG 232522 30 100.0 38 .............................. TTCGTCAAGGTGTCGTGGCCGGAGGAGTTCGGTGACGC 232590 30 100.0 35 .............................. GCGCTGGTGTGGCGCTGCCGCTGCTCGCGGACGGA 232655 30 100.0 35 .............................. TCGCAGGAGTCGATCACGAAGTCGCAGCCGTCCGG 232720 30 100.0 36 .............................. CTTGTCGTCTCCCGTCACCGGCTCGGGGAACTTCAC 232786 30 100.0 35 .............................. AGCGGTACCCGGATGTGGAAGCGCGGCGTGCGCTG 232851 30 100.0 37 .............................. CACACCACGTGCTCGATCACCTGCCCCGAGAAGACCG 232918 30 100.0 37 .............................. TAGTTGGACTGGACCACCGTGACCTCCTTTCGTAGCT 232985 30 100.0 35 .............................. ATCACCTCCAGCACCCCGACCGCCCGCTCGCCGAG 233050 30 100.0 36 .............................. TCTGCTAGATATGCGTCGTTGTCCTGATGGGTTGCG 233116 30 100.0 36 .............................. ATCTGGGTCACGGCAGACAAGAGCCTGCACCACCAG 233182 30 100.0 34 .............................. CTCCTGCGGGCGTGGACGCTCAGGGGGATGTCGT 233246 30 100.0 36 .............................. ACGTGGACGCGCTCGCGGAGCGCTTGGCCGCCGCAG 233312 30 100.0 36 .............................. GTGGAGTACGTCCGCGCTCAGCGAGATGACGAGCCC 233378 30 100.0 35 .............................. GTGCTGTTCGTCCACGCCCCGCACCTGGTGCGCAA 233443 30 100.0 34 .............................. TCTGCCTGGCCTATGACCCAGTGCACGTCTGGAG 233507 30 96.7 34 ....................A......... ACGGTGCCCGTGGGGCGAACCGGCGGGCCTGCGC 233571 30 100.0 36 .............................. AGCACAATCCGGCGCGGGTGTAGTCGCGGCGGGACG 233637 30 100.0 38 .............................. GGCACCCCGGGGGTCTACCTCCTGGAGGGCCACGCCAT 233705 30 100.0 35 .............................. TTGCCGCCGGGGCCCTGCTGCTCGATGAGCCGCCG 233770 30 96.7 37 .....................C........ AGGCGGCCAGTTTCGCCAGGTCCCCCACCTTGCGGCG 233837 30 100.0 37 .............................. TGACCTGAGAAGACCCGCCGCTCTGGCTGACCCCCCG G [233859] 233905 30 100.0 37 .............................. ATGGCCGCAGGAAAGGAAGCTCCCGTCATGCTTCCGG 233972 30 100.0 37 .............................. GCGCACCCATCTCCCTGTAGCTGGCTGCCTGTATCCG 234039 30 100.0 36 .............................. CAGGTCGACGGCGGCCACCATGGGGAACTGGCGCAG 234105 30 100.0 36 .............................. CCGGTCGACACCGGTTTGGTGAGTTCCGGCGTCGCC 234171 30 100.0 36 .............................. TGCGGCAGGTACCAGGACCTGGTGGTGCCGTTGGCG 234237 30 100.0 37 .............................. ATGACCGGCGGCCGCCCGACGCCCGGCGAGCCGACCG 234304 30 93.3 35 A.......T..................... GGTTGTGCGCCCACACGGTCATCGTGGACGGGGAG 234369 30 96.7 28 .....G........................ CGGGTGGCGTTGCCTCCCCGTGATCGAG Deletion [234427] 234427 29 83.3 0 ....CT....-.........C......C.. | ========== ====== ====== ====== ============================== ====================================== ================== 38 30 99.1 35 GTCCTCATCGCCCCTACGAGGGTTCGCAAC # Left flank : CCACACACCCGAAGACCAGCGAGAACAGCCCCGCCCCGAAACTGTCGGTGGGCGCCGACATAATCACCCCGGCAACCATCCATGACGACCAGCAGAACCTGACGCTACCGGGCCCGCGTGAGCGATGTAACGATGACCATTACAACGACCATCTTTTGTCCACTTCACCGGTGACCGCAACCAACGTGGAGCGAGCACTACTCACGTTCTCGCCGATCGGTCGCAAGTTCTCAACGCAACCGACGACACCGACAACCCTCGGAGGGGCGACAAGTTCTTCAAGGAGCCAAACATGACCACTACAAGTTGCGAACCCGTCAACCAAAACCATCCGGGTAATGAGAGTCGGCATGATGCTACCGCAACGAAGCCGCCACACCACGCCACAACCACCTCCAGCAGCGACACACCGCCTCGGCCAGCACGACCGGAGGTTCGCTGCAAAACCTGCCCTCAACCGCCTTCCACATGCCTCACTTGACCAGCAGGTTTACCCTGGG # Right flank : CTCGATGAGCTGGACCGGCTTGCTCCACGGCGCCGGTCAGTGGTGGGAAGGCCAACTGCAGGAGGCGATTGACGCGGCCCGGCCTCGGTACCGCCCCGAGTTGAACGTCAAAGGTGCTCGCCGCCAGGTCCATCGCAGCACTGTGTTCCGGCGACCGGTGGTGGGCGGTCGTCAGCGACCAGATCGGTGTGGGCCGAGGCTAGGCCCGCCGCGTACGCCGGGCTAAGGACGAAGTGCTCGCCGCCGACCTGGACGCGGGTTTTGGCGCCACCACCACGGTCGCTGAGGCGCTGGCAGCCTGGCAGGTCTCGCGGACGGCCGTCGGTGTCGCCGGCCTGGCTGAGGCTGTCGTTGGAGCCCCGACGACCGTCAACGCGCAGGAATCCGCCGAAGCCGCGGCGATGGACACGAAGTACCCCGACACCGAGCGGCGCGGCTACGGAAGTTGCAGGTCAGCAGCACGCATCAAGCTGGAGACATGGAGTTGCTCGGTCTTCGGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 146129-146524 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTIX01000004.1 Actinokineospora auranticolor strain YU 961-1 Ga0180963_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 146129 29 93.1 32 ...C........................C TGGCGTGACCTGCTCCGCAGGACCGACTTCCG 146190 29 100.0 32 ............................. TAGCAGAGTTCGACAAGACGATGCGGGAGGAG 146251 29 89.7 32 A........................C..C GGCGCGAACTCCGTCTGGTCGATCTGCCCCAG 146312 29 93.1 32 ..............A.............C GACGCGATGATCGACCCCGCTCCCGGGGCGCC 146373 29 96.6 32 ............................C GCCTACTCCGAAGAGGCGGCTGACCTTGCCCG 146434 29 89.7 32 ..............G......G......T CACACCGACTTGCGGGCCAGGTCCGCGCCTGG 146495 29 86.2 0 ............T.T...........TG. | A [146519] ========== ====== ====== ====== ============================= ================================ ================== 7 29 92.6 32 GTGGTCCCCGCGCACGCGGGGATGGTCCG # Left flank : CCGCGCGCTGCACGCCGAGATCGGCGACAGCAACATCTACATGCGTGGCGTCCTGCACCAGATGCCGGACGAGCGCCGAGCCGACGCGGCGGCGTCCCTGGCGGCGCTGCTGGGCGCGACGGGCCACCTGTTCGCGGTCGAACTGGCCCCCGCGGCCGGTGGCGTGATCAAGGAGGCCATGGGCCAGTCCGACACCTCGGTCCCCAAGATGCGCCTGGTCTTCAAGCACAACCTCACCCCGGCGGCGTGGGAAGAGGGCAAGCTGGAAGTGGTCCTGCGCGGAGCCGACCTGGACATCGTCGACGCGGGTGCGGTGACCTTGCAGAGCACGGACACCCTGCCGGACGGCAGCAGGCTCGACTTCCCGATGAACTACGTCGTGGCCCGCACGGCGAGGTAGTGGCGGTGGTGGGGCCGGGCAACCGGCCCCACCGACCGGGGTGGATGCCGAAGTGATGTGGAAACGCCGTTACGGCCGCAGAACCCGCAGGTCGGAAAGG # Right flank : GGTTTCGTCTGATCCGCCTTCAGGCAGCCCCCGGCATGATCCAGCCCACGGTGGATGCAATGGCCGTAGTGGGGCCGATAAGGTCGCGGGGGTCCTGGTGTGCTGATGGGGGTGCAGCGTGATCGAGCGGATCCTGCCGTCCGCCGTGGTGGCGGTCGAAGCGTACGACGACCCACCCGAGGCCGTCCTGCTCCCCGACGAAGAGCCCGTCATCGCCAGGGCCGTCGACAAGCGCAGGCGTGAGTTCACCACCGTCCGGTACTGCGCCCGCCAAGCCCTCGCCAAGCTGGGCCGCCCACCCGCCGCGATCATCCCCGGTGAGCGGGGCGCTCCCCAGTGGCCCGACGGCGTCGTCGGCAGCATGACCCACTGCGCGGGCTACCGGGCCGCCGTCCTGGCCGAGGCCACCGAGATCACCACGGTGGGCATCGACGCCGAGCCGCACGTCGAACTCCCCGACGGTGTCCTCGACGCCGTCAGCCTCCCCGACGAGCGGGTCC # Questionable array : NO Score: 3.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 156574-156240 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTIX01000007.1 Actinokineospora auranticolor strain YU 961-1 Ga0180963_107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 156573 29 96.6 32 ............................C CCGATCCCCTCCGCCCCCGCACGATCCGTCAG 156512 29 100.0 32 ............................. CCGCTGGCGGCCGAGGCCGACCGGTACACCGG 156451 29 100.0 32 ............................. CCCGGCCGGATCTCCGCCGCCAGTCCCCTCAT 156390 29 96.6 31 ...........A................. ACAACATGACGTCCGTGCCCGTGAAGTTCGA A [156362] 156329 29 93.1 32 .G......T.................... CCAAGGTACGCGTCATGCTCTGGCGGACCCAC 156268 29 79.3 0 ......T....A.........A..G..AT | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.3 32 GTCGTCCCCGCGCACGCGGGGCTGATCCG # Left flank : GTGCCGCTGCTGCTGTACCCGGAGGGCCGGGTCAGCCGGGAGCCGGGCCTGTGGCCGGAACGCGGCAAGACGGGCGCCGCGCGGATGGCGTTGAACGGTGGCGTGCCGGTGGTGACGATCAGCCAGTGGGGCGCGCACGAGGCGGTGTGCTGGGGGACGGAGACGGTCAGCGGGTGGGCGGACGTGAAGCCGCTCGTGGTGTCGTTCTTCAAGGCGGTGCGCAGGCGACCGGTGTTCCGCGTGCACTTCGGGCCCCGGGTCGACCTGTCGGATCTGGCCGACGGGAAGCCGGGGGACGCGGTGAAGGCGCACGCCCGGATCATGCGGCAGATCACCGAGCACCTGGTGGAGCTGCGGAAGTCGGAACCGGACACCCCCGCCTTCCACGACCCGACCCGCCCCACGGACTCGGTCAGCCCCTGGCGCCCAACGGTGGAGACCGCCCAACCGAAGTGAAGGAAAACGGCCGCTGCGGCCTGTGAACCCGCAGGTCACCAAGT # Right flank : CCAGCAACCGTCCAAACCGTGGGCGTCACCCCGGGTCGCCCTAACCACCCCGGCACCCACCACCACCTGACGTAGCAGGGCGCCGAACCCAACGCAGTCCGCTGGCGGTCGCGTACTGGATCCGTCCAGGGCCCACGCACACGGTGCGACCGTCCCGTCGCACCAGGTAAACCCGTGCGCACCTTGCCGGAAACGTCCTACCATCCCCGCAAAGCGCGACCCTGGGGGCTCTGTGACGACCGTCGAACTTCGCACGCCCGCGCAACACCGGGTGCGCGGAACACTCCTCATCCTCTTCGCCTCCGCCGCCTTCGGTAGCTCGGGCCCCCTAGCCAAGTCCGTCATGCAGGCAGGCTTCGCACCCCACCAGGTAGCCAGCGCCCGCGCGGGCATCGCAGCCCTCGTCCTCCTCGTCACCGTCGCCGCGATCCGCCCCGACATCCTCCGCGTGCGCCGCGAGCACCTCAAAACCCTCGTCGCCTACGGCCTCATCGGTGTAG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCGTGCGGGGCTGATCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 281869-281343 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTIX01000009.1 Actinokineospora auranticolor strain YU 961-1 Ga0180963_109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 281868 29 89.7 32 A............AC.............. GCGAACACGTGCCGCGGGTGGTCATCGCGCTG 281807 29 96.6 32 ............................T GCGTCCAACACCTTCTCCGTGATACGGCCCAT 281746 29 100.0 30 ............................. AGCGGCACCGCGGCGGGGGTGCGGACACAG 281687 27 82.8 32 ..T....T--.C................. GGGCCACGTCGGCAGAAGGCGCCGATGACAAG 281628 29 86.2 32 .........C...CT.........A.... AGCTCGCCCACGTAGTTCGGGGTGTTGACCGT 281567 29 89.7 31 ..T.......T.................G CCGGTGACGTGTACTTCGAGCAACTCGAGGA T [281541] 281506 29 72.4 43 ..T........C.AG........C.CA.G CGGGGCTGATCCGGCGCGCCCGTCTCGATGGGCTACTGCGGAC 281432 29 82.8 30 ............TAC.........T...T GAAACGGTGATCACCATCGGCGACAGGTTC 281373 29 65.5 0 CCGCCGT..C................T.G | C,T [281357,281359] ========== ====== ====== ====== ============================= =========================================== ================== 9 29 85.1 33 GTCGTCCCCGCGCGAGCGGGGCTGGTCCC # Left flank : CGCAGGTGCCGTGGCTGGAGCCGGACATCGTGGATCATGTCGAGGCGCTGCACGGTGCGGGTGTGCGGTCGGTGGTGGTGTGCCCGATCGGGTTCGTGAGCGACCACCTGGAGGTCGTGTGGGACCTGGACACGGAGGCGCGGGAGAAGGCGGAGGAGCTGGGGATGGGCTTCGCCCGCGCGGCTACGCCGAACGGGGACGCGCGGTTCGCGGAGCTGGTGGTGGAGTTGGTGCGGGAACATCTCCAGGGGGAGACGGCGGAGAAGCTGTCGGACTTCCCGGTGCTGGGGTGCGCGGCGAACGGGGCGTTGTGCGCGGTGGCTTGTTGTGAGCCGCCGAAGCGGCCGAGCCGGGGGTAGAGGTCGACCGCCGCTGAGTGTCGGGGACGGGTTATCCACATGCCTCGGACCTGTCCACAGGTCTGGGGGAGTGGGCGGTGGCGAGCCGCGGAAGTGAATGAGAATGGGTGGTGCGGCTGGGAACGCCGCAGGTCAGCAAGT # Right flank : GTCACGCGGGCGCCCAGGCGGCTTCGTGTGTTGTGGTCCCCGCACACGTGGGGCTGGGACAAGTGTGGTGGACGGGCTGGGGGCACCTCAGCCGAAGGGAGGGGGCGGAGTCGGGGGTGCAGGGGAACCCCCGACTCCGCCACCCGTATCAGGCGCGCAGCCGGACCTCGTGCCGGAGGTCTGGCGCTGTCGCCCCGGTCGGGAACACCGCGGCCACGTAGGCGATCGCGCACTCCGGGCACACGGTTCGCGCCGGTGGGCGGTCGCGGTGCCGCGTGTCCACCGGCAGTCCGCACAGGCCGGCAGCGCGGCTCATGAGGACCACGTGTGCCCGTCCGCCGTAGGTGGCGCTGGTTCCCCAGCACACCTCGCCGCGTGGGTCCCTGGTCGGTTTCATCCGTGGGCCGTCTGGGCTAGGTCCAGTCGGGTGTGCAGTTGCCTGCCGGTCTCGCTCAACGTCACCATCCGGCAGTCGCGCAGCCGGGCGGCGCCCACGATCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.25, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCGAGCGGGGCTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 291420-290120 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTIX01000009.1 Actinokineospora auranticolor strain YU 961-1 Ga0180963_109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 291419 29 100.0 32 ............................. GACTCGGCGTCCACGTCGAGGTCGGAGGCGAT 291358 29 96.6 32 ............................C TCGCCGCTGCTCACGCTCCAACGGCTCGGCGC 291297 29 96.6 32 ...A......................... GTGGGCGGTCCCTCCCTGGTCACGCTGTGGAT 291236 29 89.7 33 ...........T....T...........C ACCGACACGATCGACGCCCTGGTGTGTGAGGTG 291174 29 100.0 32 ............................. GTCGTCACTGGGTGGCGGCAGGGGGAGAAGAT 291113 29 89.7 32 .............T..........G...C GACCTGGAGATCCTCGAACGCGCCCTTGAGCA 291052 29 89.7 32 .C............T.T............ CGGTACGAGACCGCCGCCAGCAAGATCCAGGT 290992 29 89.7 32 ........T.............C....T. AGCCGACTGCGCCGCGCGATGGAGACCCTGGG 290931 28 86.2 32 ........-........T......A...C CACCAGCCCTGCAGGGGCGAGGTGGCGTATCC 290871 29 89.7 32 .......T...............A....C ACCGCGTTCGGCACTGCGGTGGCCTGTCCGAT 290810 29 93.1 32 .C..........................C GCCTGCTTGGCCAGCGCGGGGTTGCGGCAGGC 290750 29 79.3 32 .G....T....A......CAA........ TCGGAGCAGTTGGAGAACAACACGCTGGCGAT 290689 29 96.6 32 ......T...................... GACCCATGTGGTGCGCGAGAGTTGGTGGAGGC 290629 29 93.1 32 ...A..T...................... CCGGTGGTGACGCGCCAGCCTGAGAACACGAA 290568 28 86.2 31 ...........C.....-....C...T.. AACGGTCTGTGCGGTGCCGAGGCCAGCACGC 290509 29 86.2 32 ...........CT...........G...C AGGATGATGCCTAGGAAGAAGATCGCCCCGGT 290448 28 86.2 32 ........-..A.C..........G.... ACACTGCCCAGGCGCCCGACCTGCCCGGCCAT 290388 29 89.7 31 ....A.........T.........G.... CCCGCAGGGCTGATCGTTCTCGGGGGTCGAG 290328 28 82.8 31 A..A............T-..........C GTCAACGCCTGCCGTTTCCTCCAGCCGGGTT 290269 29 86.2 31 .C.......A......T.......G.... CTCGTCTCCGATGGGCTGCTCGCCGAGGGCC 290208 29 86.2 31 ..................A....CG...T GCCGCGCTCATCGACGGGCCATCGAGCTCGG 290148 29 79.3 0 ..T....G......T......T..G...C | ========== ====== ====== ====== ============================= ================================= ================== 22 29 89.7 32 GTCGTCCCCGCGCACGCGGGGCTGCTCCG # Left flank : CAGCTCACGCATCCAGTCGTCCAACTCGACCCGCCCGGCGTCGGTGAGCGCGTAGACGGTGCGCTCCGGCCGGGCGGTGTCCCGCACGGTTTCCTGCTCGGCGATGAAGCCCGCCTTCCGGAGCTGCTCGACGACCATGTAGAGCGAACCCCGGTTGTACTTGATGTTGCGGTCCTTCCCGGTCTCCTTGAGCCTGCGCCCCATCTCATAGGGGTGCAGGGGCTCGAGGAGCAGGTTCGCCAACACCGCCAACGCCAGCGGATTGCCCACCGAACGCCTCTTGGCCACCACACCCTCATCTCTAGCCAGGACCAACTATCCTGACCCAACTAGTCAGTGTCAACTATTCAATCCGGACCATAGTCAGCCTGCCACGGCACGCCGCCCCCGAACCGCAAGACCTATCCTCGACGCCCCCGGCCGCGCCACCCGCCCTACCCGGCACGCCCGAAGTGAACGAAAATGAGCAGAACGGCCGACAAAGCCCCAGGTCAACAAGT # Right flank : GTGATGACCAGCGCCACGACGGTTGCCCCGAAGTCAGCCAGAGCTGGTCGCGTCCTCCGCGCCGATCGCCCTAACGCGTTGGTTCGGTAGCCCCGTCCGCAGCGGGGCTTCTCCGCGCCGAAGTGTTCTCATGGTGCACGTGGAACAGCCATGGTCCGCCGTCGTCCTCGCGGGCGGAGCCGGACGACGCCTCGGCGGTGTCGACAAGCCCGGCCTCATCATCCGAGGCCGAACCCTCCTCGACCGCGTCCTCGCCGCCCTCCCCGGCGCCCACGAGATCGTCATCGTCGGCCCCAGGCGCGAAACCGAGGCAAAGGTCCGCTGGACCCGCGAACCCACCCCCGGCTCCGGCCCCCTCGCCGCCCTGGCCGCCGGCCTCGACCTCATCACCACCGACCGAGTCGTCCTCCTCGCCGCCGACCTCCCGCAAATCACCCCCACCACCATTACCCGCCTCCGCCAGGCGGTCACCCACACCGGTGCCGTCCTCACCGACAGCG # Questionable array : NO Score: 4.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //