Array 1 174875-171785 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWOH01000004.1 Pectobacterium versatile strain Ecc71 NODE_4_length_523237_cov_262.819, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 174874 28 100.0 32 ............................ ACGGAGAATTACCGGATAGACCTCAACGTAAA 174814 28 100.0 32 ............................ ATCATCTGACAACTCGGCGTTAATCAGGTCTG 174754 28 100.0 32 ............................ GGTGACCAATGGCTGATTGTCGTTTATCGTCA 174694 28 100.0 32 ............................ GCATGAAATCACAGTGCTGACCGGCAAGAAGC 174634 28 100.0 33 ............................ AGCGTGTAAATCAGCGTGACGTCAATATCTGAA 174573 28 100.0 32 ............................ CTACAGTGTATCGGCGGTTTCATAAGCATTCT 174513 28 100.0 32 ............................ TACTCAGGTAGCACCGTTTCACGCATTGCCAC 174453 28 100.0 32 ............................ AGACAAGAACTCTTCAACAGCAGGCGAGCAAA 174393 28 100.0 32 ............................ GTCTGTTAAATCTGTCCACGCGTCTGGTTATG 174333 28 100.0 32 ............................ TGCGGGCATCGTGGCAACGATTGCAAAACGGA 174273 28 100.0 32 ............................ AACGGACCAGATGAAGGGGATCGCCAGTAAGT 174213 28 100.0 32 ............................ TTAATTATGTCGCTATTTCGCTGCGCGGTTAA 174153 28 100.0 32 ............................ ATTAGCTGACCCTTACGACTCGTCGACCCGGT 174093 28 100.0 32 ............................ TTGTCCGACAGCCGGTAGTACACGTTGTCGAC 174033 28 100.0 32 ............................ TTGGCCGGATTACCGGTGATTTTTTTTGAATT 173973 28 100.0 32 ............................ TCAGCAGGTCGCGTCTATTAACCCTGCATGAG 173913 28 100.0 32 ............................ CCATGCGCTTTGGGTTTGATGTGGTCTACAGT 173853 28 100.0 32 ............................ GGAATATTCAATGTTCCCGCTCATATGATTAA 173793 28 100.0 32 ............................ TGCTTCAGAACTATCTGGATGAGGCGAAAAAT 173733 28 100.0 32 ............................ TATCGCAGCTGGATTTAAAGGGCTTATCCCTC 173673 28 100.0 32 ............................ AAAAACTCCAAAATTCAGACGGTGCGCCCCAT 173613 28 100.0 32 ............................ AACTAGATCAACGATAATTGCCCTGTTTTTGC 173553 28 100.0 32 ............................ TGCTCAACGCTTCCAGAGTCTCGCAGGTCGGC 173493 28 100.0 32 ............................ TGAATAAGTGGCCAATGCCTGATTGAATGCAG 173433 28 100.0 32 ............................ ACCAGCGTTTTTGACCATTTCTATTTGCAATA 173373 28 100.0 32 ............................ ATCAAGTCTAAGCAAACCGTCACGCAGTCGAT 173313 28 100.0 32 ............................ TTTCTGAGTGGTCAATTTCAGAGTGTCACCAA 173253 28 100.0 32 ............................ TTCAACCGAGCTATTACCGAAACGCACCTTTG 173193 28 100.0 32 ............................ GTACAGCGGAGGTGAGGCTATGAGAATGGACA 173133 28 100.0 32 ............................ GACGAGTGGGAAGCGCTGCGCGTAGGGAAGGC 173073 28 100.0 32 ............................ TGTTAGCGAAAGACATCGCACCTGCTGCTGCT 173013 28 100.0 32 ............................ ATCGACTGAGCGAACTTAGGTTTTTCAGTGTC 172953 28 100.0 32 ............................ GTCAATTGAAAGTGTGGGCGATGACTGGACGC 172893 28 100.0 32 ............................ GACATGCAAGCACGCCAGCGTGATGTCGCTGC 172833 28 100.0 32 ............................ GCACAGGTTGGCACCGCGCAGGTTGGCACCGA 172773 28 100.0 32 ............................ GATGACCGATTTGCGCAAAGCCGCGTTGATAT 172713 28 100.0 32 ............................ GGCAGGGCGCACATCGGGTGCCGCTGCCACGC 172653 28 100.0 32 ............................ ACCGACAACAACGCTCTCGGTCTTCTTAACGG 172593 28 100.0 32 ............................ AGTGCATCGGCGTAATTGTCGATCAGCATAGT 172533 28 100.0 32 ............................ AATAGCTATTCAGAAATAGGATTGCGGAAACG 172473 28 100.0 32 ............................ GTGAATGGCGCTCCGAAGGGTAACCAATCTGA 172413 28 100.0 33 ............................ ATGATTTAGTGATTAGCGTTTCAACCGATCGGC 172352 28 100.0 32 ............................ TACAAATTTCGGGATCGTTGATGATGATATTC 172292 28 100.0 32 ............................ GTGTTAGTGAATGTAAAAAACGTCAGGGCGGT 172232 28 100.0 32 ............................ CAGATCACAGACCAACAATTTAGGCGCAGATA 172172 28 100.0 32 ............................ TTTATGAGATAAGTACAAAATTAAAGTGTTTA 172112 28 100.0 32 ............................ GAAAGCTGAACGGCTGCAAAACGGAAATAGAA 172052 28 100.0 32 ............................ AGCATTTTACGGGATGACCTGGACGGCTTCAG 171992 28 100.0 32 ............................ TTACCGACCGACGATGCTGATAGACCGGATGT 171932 28 100.0 32 ............................ TGACGGGACAATATCAGGCATGGGAATCCTGG 171872 28 100.0 32 ............................ AGACAGTAAGGGATGGTAAAAATATAACAATT 171812 28 78.6 0 ...........C........T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 52 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGTGACGGAGGTGCCGGTCCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAAGCTAATTATTTAATAAGAAAAAATGTAATTTTCAGAAAACTAACGGAAATCAGACTATCACAGCCGTATATAAAAAATGATGACTGCAAAAAATATTACCGAGACACAGACCCTTTTTATTTGGCCCATTTCACAGGTTTAATAATCAATGAGTTACGGCTAGGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCAACG # Right flank : CGACCTTAAGCGCTGTTGTCTGGCTATTATCGAAGTAGTACTGCGCCAGCGCTCACCCTCGTTAAATGACGCATATTGATGGCCTTATTCCGTAACGTTTTTAAGTAATGAGTTTATTTTAGAGGGAATGAAAAATTGTGGGGTCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAATTGTCCTTACAGGGAAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCATAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAATCCTAATGATTCCTGGAAAACGGCAGTATTTGGCTGTACCGATCCCATCTCGTCGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 183827-184393 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWOH01000004.1 Pectobacterium versatile strain Ecc71 NODE_4_length_523237_cov_262.819, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 183827 28 92.9 32 ...........TG............... GAGTATGAACAGTATGCCGAGCGCGGGGAAGA 183887 28 96.4 32 ...........T................ GGCAAACGCAGATACGAGCGTTAATTCTGTAT 183947 28 100.0 32 ............................ AGATAATGCGTGCGGTATGGTCGCAGCCGTCA 184007 28 96.4 32 .....................C...... CACACACCTGCATGTGTCAGCACATCAAGTGG 184067 28 100.0 32 ............................ ATCATGCGCACCAAATAAAAATAACTAACTTA 184127 28 100.0 32 ............................ GACATCGTGGTGACGCGCACAGTGCGTAGATT 184187 28 100.0 32 ............................ AGTCGGCCGTAAATGAAAGATGCGACCGAAAT 184247 28 100.0 32 ............................ AAACCCATGAAGATTTCGGACTTTCCGACCAA 184307 28 89.3 32 .G.........T...A............ CATGCGCCTTGGTTGAGATCAGCTTTCTGAGG 184367 27 82.1 0 ...........T.C.......-....TG | ========== ====== ====== ====== ============================ ================================ ================== 10 28 95.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AAGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAGTGTAACGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGAATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCTGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGCTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGTTGGTTAGCGTAAAAATTTAAC # Right flank : GCTTATCAGGATGCGTCGCTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACTGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCAAAATCCTGCCGCACCGTAGGGTCGGCATTTTCGTTAATCGTTAGTGCCGCCGAGGTGTGCTTGATGAACACCAGCATCAGCCCGACGTTTATCTGACGCAGTGCGGTGACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATTGCCTTATTCCTGCTATCAGGCTTCACGCGCCAGAATAGGTCGCAGGAAGCGCGCA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //