Array 1 219938-221796 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCE01000047.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3252_R1 NODE_4_length_345593_cov_1.80293_ID_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 219938 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 219999 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 220060 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 220121 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 220182 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 220243 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 220304 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 220365 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 220426 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 220487 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 220548 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 220609 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 220670 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 220731 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 220792 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 220853 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 220914 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 220975 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 221036 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 221097 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 221158 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 221219 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 221281 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 221342 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 221403 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 221464 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 221525 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 221586 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 221647 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 221708 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 221769 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 237908-239445 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCE01000047.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3252_R1 NODE_4_length_345593_cov_1.80293_ID_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 237908 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 237969 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 238031 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 238092 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 238153 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 238214 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 238275 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 238336 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 238397 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 238458 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 238519 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 238580 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 238641 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 238702 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 238764 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 238825 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [238867] 238867 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 238928 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 238989 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 239050 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 239111 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 239172 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 239233 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 239294 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 239355 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 239416 29 96.6 0 A............................ | A [239442] ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //