Array 1 168514-167766 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEST01000002.1 Escherichia coli strain 02-07811 contig02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 168513 28 100.0 32 ............................ AGTTGGAGTATGCGCGTGGGCTTAAAGATCGC 168453 28 100.0 32 ............................ AGCAAAAACCGGATATAGACAATCTCACTAAA 168393 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 168333 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 168273 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 168213 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 168153 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 168093 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 168033 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 167973 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 167913 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 167853 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 167793 27 92.9 0 .......................C-... | T [167774] ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 178201-177570 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEST01000002.1 Escherichia coli strain 02-07811 contig02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 178200 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC 178140 28 100.0 32 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 178080 28 100.0 32 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCAA 178020 28 100.0 32 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGAA 177960 28 100.0 33 ............................ CTGCTCGACCCTGTCATGCGGCGCATCCGGCTC 177899 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 177839 28 100.0 32 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCACC 177779 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 177719 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA 177659 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 177599 28 85.7 0 ....................T...C.CT | C,A [177573,177576] ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //