Array 1 9914-10611 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAEL01000014.1 Enterococcus sp. CU12B 7000000226399008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 9914 32 100.0 34 ................................ TTTGATATAATTCTCCATGTAATCAACTCCTAAT 9980 32 100.0 36 ................................ GAACCATTAGCCAAGTCATTTGACCGTCTAATCAAG 10048 32 100.0 33 ................................ TTCGATATTCTCACTATCATTATCAATAATCTT 10113 32 100.0 33 ................................ TATATTTATATAATACCACCATATTGGTGGTTA 10178 32 100.0 36 ................................ AGCAGTGTCCTCAGTTGACTCTTGTCTCAGGTACGC 10246 32 100.0 34 ................................ TTTCGTATCAACAAACACACCATAAATATAAGCT 10312 32 100.0 34 ................................ AAAAAATGGACGCTGAGGCAGAACGTGATGCGAT 10378 32 100.0 37 ................................ AAATGGATAGTCGTATTCATCTACTAATTCTTCCAAC 10447 32 100.0 34 ................................ ATTGACGAGTATTTCCCATCTTATGATTACGCTA 10513 32 100.0 35 ................................ TTAGACTATCGAATCACAAATGATGATAAACAATT 10580 32 93.8 0 .....................C.C........ | ========== ====== ====== ====== ================================ ===================================== ================== 11 32 99.4 35 GTTGCACTCTTTATGAGTGCATGGATTGAAAT # Left flank : TAGATACAGAAATGACTTCTAAAGTAGCAGATTTTTTTGTAAAGGAAGATATCGAAGCACGGATAGCGGAACTCTATCAACAAATTGATGATGCTTTAGAAAACGGTGACCAAGCCCAATTTTTATCCCTGTCTTCAGAAGTGAATCAATTATTGGAACAAAAAGCGTTAGTATTGGATTAATGTTAGAAAAAGTCAGAAACTGTTGGTTTTTGACTTTTTTCTTTTTAATGAAATCATTACGTGCAAAGTAGCAGAATTGATTGTATAGTAATAGTGTAGACAAGTTGAGAGAAACGAACGGATTAATCTGTTATCACGTGGTGCGAACCCTATGCTCCCAGAAATTCCCTGGGAGATTCGCACTGAAAAAAAGAGGTAAAATGAAAAAATGATGAGAGAATAAATACGATTATATTTTTATTATCAGAAAAAAATATAATTGGGCGATGTTTATCAAAAATAAGTAGGGTTTTTGACTTGTTTTACGAAAAAATCGCC # Right flank : TTACTTAGGAGTATGTTCTATAAATAATAAATTGGAAAATTAGCTAGTAGATACTATAAACTTATGAAAAAACTTCTACTTTATACGAGCATGCATACTCTTTACAATCAAGGAGGTCTTTATAAGTTTCCAGTACTGTGATTTTTTGACTGCATGTCATTGTAGTATCGTAACACTCGTATCTTAAAAACAAGACTTTCACTAGTCAATCAATTGAAAATGTGCTAAAGTATATTAGACGAATAATAGGCAGGAGGTTCCAAACGTGTATAACTTTATATTAGGAACAGTTATTGTACTTTCAATTATTTTAATTATCGCAATCATGATGCAGCCAAGTAAGCAAAATAGTGCAGCAAGTGCATTTACTGGTGGTGCAGATCAACTTTTTGGTAAACAAAAAGCACGTGGGTTTGAAGCTGTCATGCAACGAGCAACAGCTATCTTGGGTGCTGTTTGGTTAGTATTACTATTTGTATTAGTATTACTATCATCGACTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCTTTATGAGTGCATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 95405-96125 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAEL01000023.1 Enterococcus sp. CU12B 7000000226399019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 95405 34 100.0 35 .................................. TTCTAATGCTGCGATTTCACTTTCTCGCGCTCCAG 95474 34 100.0 34 .................................. ATAATGCCATTTGTACGACGACCAGCCGAACCAC 95542 34 100.0 36 .................................. AAAATGTAGAGCAAATCAACGTGAAAGTTCGTGCCA 95612 34 100.0 34 .................................. GATACTTAGCCAAAGAAATGCAAGCTAATATGCG 95680 34 100.0 34 .................................. GCTAAAATATTAGACGAGCAACGCGCCAGCAACG 95748 34 100.0 34 .................................. CTCGACCTGGCGCTCAAAACGTGCTTTTTCCTCT 95816 34 100.0 36 .................................. AGTTGGAGGCTAGTAAATAATGCAATCAGAACAATC 95886 34 100.0 35 .................................. CGAGATATTAATAACGACAAATATATTATATCAAA 95955 34 100.0 35 .................................. AAGTAAATTGTCATTGATACGACTAATTTCCTTAT 96024 34 100.0 34 .................................. TTGTAAACGGTGATACAGAAGCTACTCTCAAACG 96092 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ==================================== ================== 11 34 100.0 35 GTTATGCTCTTGTAGGGAGCATATGGATTGAAAT # Left flank : TGGTTTAGTAAGACAGCTATTTTGAATTGGGTACCAACTATGCCAACGGAATCGTTTGATTTTACAGTATTTATTAGTATTTCTCTTATCGGTTGTCTATTGATGATAATTGGCTTTTATGGTTATCGCAAAAGAGATCTGCTTGAGGGAGAATAAAGAGGAAAACCATTAGCTTGCTAGTGGTTTTTTCATGCTGTTGTACGAAAGATGCTTCAATATTTAAAAATATAGCGTTAACATGTTTATAAAAATTGTGTATTCCTTTATACTATGGATAGAAAATAGTCTATGTCATTGATTCGATTTTCTTACTTAAGTGTCTAGTGCGAATGTGATGCTCCCAGAAAATCCCTAGAAGACTCGCACCAAAAATAAACGTTTAAATGAAAAAGTGATGAGTAAGTAGTTGCGATTATATTCGATTTATAATTAAAAGATATGGTTGAGCGATGCATATCGAAAATAAGTAGAAGTTTTCCTTTATTTACTTGAAAATCGCA # Right flank : TTTCGAATAATGCACCGTGATTTTTTCAATTCGCTTATACTCTTGTATAAGTGCAACCGAGTTATTCGGGCGAAGAAAGAAATATATCCATCATTTCAATCCATGCACTCATAAAGAGTATATTGATTGCACAGTCATGTGTTCTCGTTTATTTACCACAACAAAAGGGAGCGAACTAATTTAATTAGCTCGCTCCCTGTTTTTTAACTTACTTTTCTTTTGGAATTGTTAATTGATTACACTCAATACGCAATCCGATACCATTTTGCGCTTTTCTAATAATTGAAGTATACTGTAATCAACTGAAAGTACGCATCCTAAGGGAATCGAACCCCTGTCTTGAGAACCGGAATCTCACGTGATATCCACTACACTAAGGATGCTGAATACTTTACATAGTTTAGCGGACTTTTAGAAAAAAAACAAGGAGAAATATATATGAAATTTCAACAGCAGTTTTCTCAACAACAAAAACAAACACAAAAACTAGCAATGACTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATGCTCTTGTAGGGAGCATATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 2 98171-97940 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAEL01000023.1 Enterococcus sp. CU12B 7000000226399019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 98170 32 100.0 34 ................................ CGATACATCATCATCAACGTGTGTGGCAATTAAT 98104 32 100.0 36 ................................ TTGTAAGTGGCGATGGAGACGTTACAGATGAAGAAG 98036 32 100.0 33 ................................ AATCGGGGATTTTAGTTCCCACACCATCTTTAG 97971 32 87.5 0 .......................A...AC..G | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 96.9 35 GTTGCACTCTTTATGAGTGCATGGATTGAAAT # Left flank : ATCGAAAATAAGTAGAAGTTTTTTCTTATTTTACTAAAAAATCGC # Right flank : CGTATAAAAAGCGACTATAGGAAGCATCCATTTGGATTTTGTCTATAGTCGCTTTTTTGATTATTCGTCGTATCTTTTTCTTTTAGTAGAGCTAGGGATTTTAAGTGCGTCACGATATTTCGCAACGGTTCTTCGGGAAACTTCAATACCTTCGTCATTTAATAATGTCACCAGTTTTTGATCCGATAACGGCTTCTTCTTATCTTCACTATCTACTAATTGTTTCAATCGATTTTTCACGTCATTGGTTGAACGGTCTACGCCTTCTTCAGAACTTAATTTTTGGCTAAAAAAACTTTTTAATTCAAATACACCAAAATCAGTTTCTAGATATTTCCCATTCACTGCACGACTCACCGTTGATTCATGAATGTCTAATACTTCTGAAATATCTTTTAAAATAAGTGGTTTAATAGGGTGTTCTTTTTGTAAAAAGAAGTCTTGCTGACGTTTAACGATTTCTTTACCGACATTATAGATTGTGTCTCCTCGTTGTTCGA # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCTTTATGAGTGCATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7178-5722 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAEL01000056.1 Enterococcus sp. CU12B 7000000226399059, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 7177 33 100.0 36 ................................. TAGTTTGTTTGGCTCGTTAGGTGAGGATAATGCTGT 7108 33 100.0 34 ................................. TCTGCAATGGTACCACCAGAGATAACAACTCCAT 7041 33 100.0 34 ................................. GGTTGGGGTAATCTTGTACTTGTCTCGAAGTTTT 6974 33 100.0 36 ................................. GTCTACTAAAGAGACAAATTGGTCGTTATCCTCATA 6905 33 100.0 35 ................................. AATATTCGACTGTTTTACATGTTGTAGAGATCAAG 6837 33 100.0 35 ................................. CTGTTTACAAAATCGAGAAGGGGAAGTTTGAGTTG 6769 33 100.0 34 ................................. AAATGGCACTAGGTTCCCGTTCTTTCGTGTGCCT 6702 33 100.0 35 ................................. GGACAAGCTTTAAACGTAGCTATACCAGGTATGAT 6634 33 100.0 35 ................................. AAGAATTGATATCCCAACTCGAATTGGTAGAAGAC 6566 33 100.0 34 ................................. ACTCCATTCAATATATTGCGGAAACGCAACCGTG 6499 33 100.0 33 ................................. CCAACTATTGAAAATCATTTGTACTTGTTCAAC 6433 33 100.0 35 ................................. CTCGTGACCGAAAAGAATTCGATGTAGTTCTTACT 6365 33 100.0 35 ................................. TCTGGATGGTGGACATGCTCAATCGGCAACTACAG 6297 33 100.0 34 ................................. CTTGAGAACGTCAAAGGATTGCTCAATCACGAAG 6230 33 100.0 35 ................................. AGCAGCTTCCTCCACCCATACAGCAACGATGTTTC 6162 33 100.0 34 ................................. GTTTGAAACAGGTATGGGAATGATGCCGGAAGTT 6095 33 100.0 35 ................................. TTAATTCCATCTGTCACAGGGTCAATAGCCATTTT 6027 33 100.0 36 ................................. TATCAAAAGTAGTTAAGTTGCTTTTAGGGAAAGAAC 5958 33 97.0 36 ...............T................. TTTTTTACTCCTCAATCAGCATTGCTTTATGACCTG 5889 33 100.0 34 ................................. ACCAACACCACTAATCATCATTTTCTGTTATAGA 5822 33 100.0 35 ................................. TGTGATTAGTTCAGAAACTGTATTGACCGAATTTA 5754 33 90.9 0 ...........C.......A..C.......... | ========== ====== ====== ====== ================================= ==================================== ================== 22 33 99.5 35 GTTACAACCTGTATAGGTTGTATGGATTGAAAT # Left flank : | # Right flank : ATCGGTACGTGCTTGCATTTTCGAAATGTAACATCCAATATAGTTAATTTATGCAGTACACGTGATTTCTCTAATATTTAATTACAGACTTAACTCTAATCAAAAAAACGAACTCTATTTAACATAAAGTTCGTTTTTTATTTTTTGAATTTTATAAATAAAAGCTTTTTTGTTTTAAATGTTTCGCTGTAATTGTCGATAAATGGCTTTCAATTAGTTCAAAATCACTTTCAGATAATTTCTCGTTAATAGAGATAATCGGAATTAAAAAGCCTAAGTTAGAAGGAGGTTGTGTGGTGTCTTCAAAAGAAGTGGTGCTGAGGATGAGATCGGCAGTGTCAATTTCTGAAGTGAAAGAAATCATATATTTGTTCTGAAATTTGGCAGAGATTCTGAATTGAAGATATTCAGTATACAAAAGCGTGCAATCAGAATGAATATATATATTAACTTTTGGCAGAAATATTTCTTTCGGAACTAAATGAAAGCATAACAGCAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACCTGTATAGGTTGTATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.30,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 52-1623 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAEL01000062.1 Enterococcus sp. CU12B 7000000226399067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 52 32 100.0 34 ................................ ATCGACAGATAAAACGAAATAAAACGGCTTAGAA 118 32 100.0 34 ................................ TTGTCTTCGTCGGTCATAATCGCACGCTCATAGC 184 32 100.0 37 ................................ TGCTTTGCTTGAGCGTTCTCAAGAAATGGCATGGGAT 253 32 100.0 34 ................................ AGCGCCCTCTATAGTGTCGTTAGAAGTATCTCTT 319 32 100.0 34 ................................ ACATTACCGCCAACCAATGAATTATTGATTATCT 385 32 100.0 35 ................................ AAATTGTCAAGAAGTGCTACTTATGACGATTGGAT 452 32 100.0 35 ................................ AAACGATATAAAAGGTTTAAATGACGATGTTGTTT 519 32 100.0 34 ................................ TATAGTGATAAAAAACTGCGAAGCTTATTGTTTA 585 32 100.0 33 ................................ TGACGTAAACACTCGTAAGTCGTATTCTTTAAT 650 32 100.0 35 ................................ AAGTGTATCAAAATGACCTAAATAAAGTCGTTTTT 717 32 100.0 35 ................................ TCAATATCTCACTGACTGCAATCCGACGTTTGCCA 784 32 100.0 35 ................................ ACTGAAAATCAGTGGATTGCATACTATGAAACGCA 851 32 100.0 36 ................................ CAGATTGTTATCAGTCATAACGAAACACCAGATATT 919 32 100.0 34 ................................ TTTCTTTTTAACAAATACATAGACCGCACTCACT 985 32 100.0 34 ................................ TGCTTGCATTGTGTATTCCAATTTACCATTTTCT 1051 32 100.0 36 ................................ TACGGTTGTTATTGGTGTTGCCTAGAACGATTCTAA 1119 32 100.0 35 ................................ GGATGTTGAAGTTATTGTTCCAAGGGGAAAAAAAC 1186 32 100.0 36 ................................ AATTGTTTCGGCTCTAGTGAAAAGTCCTCCATTAAG 1254 32 100.0 35 ................................ TCGATATTGTCTAATCTGTTGTTAATATTTGTAAT 1321 32 100.0 37 ................................ ATGGCGTAGTAACTCCCTGATGCTGGCGGACAAGAGC 1390 32 100.0 38 ................................ AGTATCTTGAAGTTCCCATTGCGATCCATCCACTCAGG 1460 32 100.0 35 ................................ CGGTAAAGTAATCAGAAAAAGTTTTAATGGATAGG 1527 32 100.0 33 ................................ ATTTGGAAACATCCATAATTTTTGAAAGGTCAC 1592 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 24 32 100.0 35 GTTGCACTCTTTATGAGTGCATGGATTGAAAT # Left flank : AGTGCATGGATTGAAATAAAGCCACTGCCGAGGCTAGACCCCGAGCGTATGG # Right flank : TATTAAAGGATCAAAACTTATCTCGTATTGTTGCACTCTATAGAAAATAAAAAACGAACTGTCCTATTTAAGACAGTTCGTTTTTTTACTCTGATTATTCTGCGAGATTACTCATGACAAAATCAGTTAATTGTTTAGAAATTTCTTCTTTTTGGGCGCTTATTTCTTGCATAATATATGCTTCTAAGATTCCAGTTACACCGTAAGCCAAAAATTGTATTTTGAATTCATCGATATGTTTGGCGAAAATTTGTTCTTTTTTCTTTAATTGCTCCATTGTAAATAGGAGCAATTTATTTCTAAAAGAATATGAACCATGGCTACGGAATAATCGACGAAATAGGGCATGGTGCTCATCGAAAAATAAGAACCATTCATAGGCTGAATCCTGCATGCCAGAAGTTTTCATTTTTTCACAACGTTGATCAAGTTCTTCTAAATAGTTATCAATAATGGTATCCATTAAATCATATTTATCAACATAATGTAGATAGAATGTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCTTTATGAGTGCATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 71953-72917 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAEL01000062.1 Enterococcus sp. CU12B 7000000226399067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 71953 32 100.0 34 ................................ TTGGGATAACTTCTCTAATGTTGCAGCATCTGTG 72019 32 100.0 35 ................................ TGGATTCAAATACACTGTTGTTCCATGTATCCATC 72086 32 100.0 34 ................................ AATATGCGTGGGATAAGCAAGCCAATTTTTTAAA 72152 32 100.0 34 ................................ ACTCACTCGCTCCACGCTCCTTGTCTATCCTAAA 72218 32 100.0 35 ................................ TTTTGTGCCTGCTCTCGTATCTCAGGGTTAGATAT 72285 32 100.0 34 ................................ ATCTAGTAACATAACTAAAGGTACTGGCAATTTT 72351 32 100.0 35 ................................ CCCCCAATAAGCCGATCCATGAACAGGGTTTGTTT 72418 32 100.0 35 ................................ TAGCACAAAATATGCTTGATAACCTTTATCTGTTT 72485 32 96.9 35 ..........T..................... TTAAACTTATATTTTCTTAATCCATCATGCATAAA 72552 32 93.8 35 ..........T...A................. AGTCCCACCAATTGAGCCATAAGCTGTTACTCCGC 72619 32 96.9 35 ..........T..................... CTTGATTGGATTCCAATAGTTTCTTGAGGTCAACC 72686 32 96.9 35 ..........T..................... ACAAAATCTGAAATAGAAATGTTAGGACGGTCTGT 72753 32 96.9 33 ...........................A.... ATGTTATACTATTATCGCAAATGCAATAATAGT 72818 32 93.8 36 A.........T..................... CGTGTATCAATCCCTTCTGGTACTTTTTCCATTGCT 72886 32 93.8 0 ......................A....A.... | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 97.9 35 GTTGCACTCTATATGAGTGCATGGATTGAAAT # Left flank : CCACCATTCTTTTGGAAGTAGGTGATTCATTTTGTTAGTATTAGTAACGTATGATGTCAGTACATCAAGTATTGGTGGTCAAAAAAGATTGCGAAAAGTCTCTAAAGTCTGCCAAAACTATGGACAAAGAGTTCAGAACTCTGTTTTTGAATGTGTTGTTGATGCAGCACAATATGAAGTTATGAAAAATGAATTGATAAAGTTAATCGATAATGCACATGACAGCTTACGATTTTATCGATTGGGGAACAACTATAAATCAAAAGTGGAACACATAGGAGCGAAAGAATCTTTAGATATTGAAGCTCCATTAATTTTTTAGTGCGAATTCTATGCTCCCATAAAATCCCTAGGAGATTCGCACCGTAAAAATCTATTAAAATTAAAAAACGATGAGGAAAACAAATACGAACATATCTATTTTTTTAAATTAATCAGATATATTTGGGCGATTCTCATCAAAAACAAGTCGTTTTCGGCTTGTTTTTCTTATAATCGCC # Right flank : TATGACAATGAATGTTCATAGACATAGTTATATGTTTTATGAGCATATGGATTGTAATAAAAAAGATAGAGAAAGTTGCTAACAATTGATCTTAGTTAGTCGCACTCTTTAAAAACTCATAAATCGAATACCCAACGCACCATGGCGATAATTGCTGTGAGTAAATAATAAATATACGTTAAAACACCACGCTATTATATACATCTCGACAAACAATAACTATAGAAATGAAACCATATATTTTAAAAGTTAAACCAACAAATTAACACTGAGGAGTGATTGTATTGAATAACGAACGTTCATTAGCATCAATGCAAGAAGAGGTAGATGCTTATATTCAACAATTTAAAGCCGGTTACTTTGGACCGTTGTCTCAAATGGCTCGTTTGACAGAAGAAGTTGGCGAATTGGCTCGGGAAGTCAATCATTATTATGGCGAAAAACCAAAGAAATCCACTGAGGCAGCCAATACGGTTGCTGAGGAATTGGGAGATGTCCTA # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCTATATGAGTGCATGGATTGAAAT # Alternate repeat : GTTGCACTCTTTATGAGTGCATGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //