Array 1 219725-220972 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGH01000005.1 Salmonella enterica subsp. enterica serovar Gaminara strain 07-0467 NODE_5_length_265434_cov_4.22062, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 219725 29 100.0 32 ............................. CCCGGTTTTACCGCCAACACTCACTATATTGT 219786 29 100.0 32 ............................. CAATCATCTGATTTTTTATCATTGAGAGATAT 219847 29 100.0 32 ............................. GCAACTTCTTATATGTAAAAAACCGTTATGAT 219908 29 100.0 32 ............................. TCCGGGGAAAGAACTCGCCTCGTCCAGCGTCA 219969 29 100.0 32 ............................. GCAATATGAATAACAACGTACCACTCATCGCA 220030 29 100.0 32 ............................. GAGCACTTTTACTGTAGGACTTGTATGAATCT 220091 29 100.0 32 ............................. CGGCCGTAGCGCCGCTCAGTCCGGGGGATGGT 220152 29 96.6 32 ...........A................. CAATTGCGTTCTTGCTTATGCCCAGCGACTTA 220213 29 93.1 32 ..G.........T................ ATTTCAAACACTCCGGGTCTGCCAGCGCCTCA 220274 29 96.6 32 ..G.......................... CGGCGGCGGACGCCGCTCAGATAGCCAAAACC 220335 29 96.6 32 ..G.......................... TATACAGGATTCTCACACTTTGGTTTGGTCGA 220396 29 96.6 32 ..G.......................... CGTTTTTTTTATTTGTACTATTGTCAGTACCC 220457 29 96.6 32 ..G.......................... CGGAAACAAACAAAGTTTTGCGCGATTCCACC 220518 29 96.6 32 ..G.......................... CACCAGGTAACAATATCGTCCCCGACCTTTAT 220579 29 96.6 32 ..G.......................... GCGAAATTCCCCAGATACCGCGCATCGGCACT 220640 29 93.1 32 ..G.........T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 220701 29 93.1 32 ..G.........T................ CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 220762 29 93.1 32 ..G.........T................ TTGCCACAACCACAATGGATCAGGAGCAATTA 220823 29 93.1 32 ..G.........T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 220884 29 93.1 32 ..G..........T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 220945 28 86.2 0 ..G.........T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 96.2 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTACCTCGCCTTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATTATAGTCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAAGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 237733-239409 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGH01000005.1 Salmonella enterica subsp. enterica serovar Gaminara strain 07-0467 NODE_5_length_265434_cov_4.22062, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 237733 29 96.6 32 ............................T TACGGGTGGCATACGACAGCACAGCGCGTACC 237794 29 100.0 32 ............................. CCCGTCCACTGCTGGATGAAATGATGGAATGT 237855 29 100.0 32 ............................. GGCACGACGCACCTGCTAAAAAATACTACCGC 237916 29 100.0 32 ............................. CGTATTTTTGAACTGGCCAGCGCCACCGATGC 237977 29 100.0 32 ............................. GGTTACGCGGGCGTCTGTTAAAGAGTCCTCGT 238038 29 100.0 32 ............................. CGCCAGCGCTGAGGTGAATTTTAACGGTGTCA 238099 29 100.0 32 ............................. AAACAACTCTGTCTATTTTATGAATAGTTAAA 238160 29 100.0 32 ............................. ATTTAACGCGTTTTTTGGGTTTTCCCCTTATG 238221 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 238282 29 100.0 32 ............................. GTACGTTGCCAGATTGCTTTCAATGATGGCGT 238343 29 100.0 32 ............................. TACTGACACCTCAACCTTTTATTTATAAGCCA 238404 29 100.0 32 ............................. GCCGGGGTTTCCCGGAGGCATTCTGATGAAAG 238465 29 100.0 32 ............................. CGAATGCAGATGCCTCCCGTACTGCCGCCGGA 238526 29 100.0 32 ............................. AAAACCCAGGAACGGCACCAAAATTTACACAT 238587 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 238648 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 238709 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 238770 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 238831 29 100.0 32 ............................. GAGCATACGGAAATTAAAGGGGTTAACGATCA 238892 29 100.0 32 ............................. CGCGCAACATTCATTACTGCCCACTATTCAGA 238953 29 100.0 32 ............................. AACGCGCCGCCTTAGAAAAACAGCGAGGGGAT 239014 29 100.0 32 ............................. CGTCCTGTACGTGGTAGCGATAATCGTAATAA 239075 29 100.0 32 ............................. ACGCTGAAAAACGATATTTCGCTGACCTATGC 239136 29 100.0 32 ............................. GCTGATACGCAGACGATCACAAACTATATGGG 239197 29 93.1 32 ...........................TT TAATCATTTTGTTTAAATCCCGGATCACCTCC 239258 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 239319 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 239380 29 96.6 0 ............T................ | A [239407] ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTATTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //