Array 1 22370-21182 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYXG01000103.1 Actinokineospora spheciospongiae strain EG49 contig1285_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22369 29 100.0 32 ............................. CCGGCGGGCCACGTGTGGGCGTCGGACAGCGG 22308 29 100.0 32 ............................. GCCCACATACCGCCCCGGTCCACCAAGCCCAC 22247 29 96.6 32 ............................A ACATGCCCCCGCACAGGCGGATGGACCGCGCC 22186 29 100.0 32 ............................. TCCTGCCGACTGAGGCCCGTCTGCCCCCGAAG 22125 29 100.0 32 ............................. CGGTCGTACAGCCCCAGCAGGTGCTCCCCGAG 22064 29 100.0 32 ............................. GTGCCGTGCGGCTGGCGATGATCGCGGTGAGG 22003 29 100.0 32 ............................. GACGTGGTCGGCATCCTGTGGCGCGGCCGGTC 21942 29 100.0 32 ............................. GGGGCCCCCACCTGCTGGGCGGTCTTGGGTGG 21881 29 100.0 32 ............................. ACCATGGCCACAGCCACATCCTGGGCGGTGAA 21820 29 100.0 32 ............................. TCCACCGGGGTGATGGGACTCGGCTTGCCCTG 21759 29 100.0 32 ............................. TGGAGGAGACCCGGAAGCGGGCGACCGCCAAG 21698 29 96.6 32 ............................G GCGGCGACGTACCGGCGGGCAACCTCGATCTC 21637 29 96.6 32 ............................G TTCGTCCATGGGTTCCACGCTCACCCCCACAG 21576 29 96.6 32 ............................G CCCCAGTTGGCTTCGTCGGCGGACAGCGAGCG 21515 29 100.0 32 ............................. GGCGTTATAGCCTCTCGCCCCAGCAGGTGGTC 21454 29 96.6 32 ............................G AACGGGAGCGACTGCGCCAGGAGATTCAGGCT 21393 29 96.6 32 ................T............ AGCAACAACAACTGGGGCGCCCCCGGGTCGGT 21332 29 96.6 32 ............................G AGGCGGCCGGTCGCGGTGCGGGTTGCCCGGTA 21271 29 100.0 32 ............................. GGGCGCGACGCGGACGACCGGATTCACCCGAG 21210 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.6 32 GTCTTCCCCGCGCGAGCGGGGCTGTTCCC # Left flank : CAGAATCATTCGAGGACCCGGACGTCGTGATGCTGTGGGACTACAACGGTCGCAACGTCGCCGGAGGCGTCGCCTACGACGAGGAGGAGGGATGACGGTCATCGTCGTGGCGGCCTGCCCCATCGGCCTGCGCGGCCACCTCACCCGCTGGCTCCTGGAAATCTCCCCGGGCGTGTTCGTCGGCCGCATCAGTGCGCGCGTGCGGGGCCTGATGTGGGAACGGGTGGTCGAGATGGTCAAGACCGGCCGCGCCATCATGGTCCACCAAGCCGACAACGAACAGGGCCTCGCCTTCACCGTCCACGCCAGCGAATGGGTGCCGGTCGATTTCGAGGGCGTGACGCTGATGTTGCGCCCGTCAGCGGTGGGTGAGGGAGCAGGCACCGGTGAGAAGAAAGGCTGGAGCACCGCAGGCAGACGCCGCCGCTACGGCCAGCGCTGAGCCGACAAAAGTGAATGAGAAACGCTGTTACTGTTCGTAAACCTCCAGGTCAACAAGT # Right flank : TACGGCAGTGCCGTGCCAGGTGGCAATCCCAAGCGGCCCTCTCACTCGGTCGCCGGGCGTCGGTTCGTGCGGATTTCGGTGACCAGCAGGGCGACGTGCAGGGACAGCACCGATTCCGGCGATTCCAGGGATACACCCAGGACCTGTTCGATCCGCGCCAACTGCTGGTAGTAAGCCGTCCTGGACATGTGCGCCGCCGCAGCAGCGGCGGACTTGTTGCCGCCGTGGGCGCAGTAGTGGCGGAGGGTGTCCATCAGGCGGCTGCCGTGCGCCTTGTCCCTGGCGGCGAGGGCGCCAAGTTCGCGGTCGGCGAAGGCGAGCAGGCGGTCGTCGTCGGCCAGGAGGTGCAGGAGGCCTCGGAGGCGGACGTCCTGGAGGCGGTGGAAGGGTTTCGGTGAGGGGGTGCTCAGGGCGGCTTGGGCGACGTGGGCGGCTTCGGTGAGGCTGCGGCGGGCTTGGCCCACCTCGGTGACCGTGGTGCCCGCGGCCAGGACCACCGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39972-40977 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYXG01000165.1 Actinokineospora spheciospongiae strain EG49 contig1293_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39972 29 100.0 32 ............................. GTGCCCTCCACACCCAGGGGGTGGCGGGTGGC 40033 29 96.6 32 ............................G GTCACGCGGCACTGCAGGCCGCCGTTGGTGTC 40094 29 96.6 32 ............................T CCATCTCGGACGGCTGGGACACCGAGGCGACC 40155 29 96.6 32 ...G......................... AACCCGGACGGTTTCAACCCGGGCCACCATTC 40216 29 96.6 32 ............................G TCGCGGGCCAAACCGGAGGAGGTGTGCATCTC 40277 29 96.6 32 ............................G CAAGCCGTGGACGCGATTGACAACAAACTGAC 40338 29 96.6 32 ............................G ACGCATCCGGGGGCGGACAGCCCGTACCTGTG 40399 29 96.6 32 ............................T TCGGCATCCTCCAAGCCGTCACCGTGGCGACC 40460 29 100.0 32 ............................. ACGGCCTTGAACGCCTCGGCGCGCGTGATGGC 40521 29 100.0 32 ............................. ACCACGCGCATCGTCCAGGCGGTCCAGGCGGT 40582 29 100.0 32 ............................. CCATTGCATAGATACGCACAGCTACGCAAAAG 40643 29 100.0 32 ............................. TTGCGCACCTCGCGGGGCCACACGCCGCGCAC 40704 29 100.0 33 ............................. AACGTGCTGGCCGATGCCACCCACTGCTGCGAC 40766 29 96.6 32 ............................G CCAAGCGCCTGCGGGACGAAGCCGAAGCGGCG 40827 29 93.1 32 ......T....T................. TGGACCCCGATTTTGCCCTGGCCTTCTCCCGC 40888 29 96.6 32 ................T............ GCCAGCAGCATGACCGCCATGTCCAGCAAGAC 40949 29 72.4 0 ....................CAACC.GGT | ========== ====== ====== ====== ============================= ================================= ================== 17 29 96.2 32 GTCTTCCCCGCGCGAGCGGGGCTGTTCCC # Left flank : ACGGCTGGGTCCGAGACAGCAAGGACCCCCACCACCGCCCCATCGCGGTCGACCTCCAAGCCCTGCTGGCAGCAACCCGCACCAGTCGACTCACCCGCTGATACCGCCGCGCCGGGTGCCTCGACAGCGGGCACCCGGCGCGCGCCATCCATCAGCGGACCTTCGAGGCAGAGGCGTACCCGGACCTGTGATGACCTGGGCGGCTCCACGCCCAACCTCCGCCCCGGCGTACCCCTGGTCGATCTCCAGCCGCACACTCATCGCCCCACCGCACGGACCGGCTTGTTCGACACCTCGACCCCACGCCACCCATCGGCACCGACTCCCGCTCAGCCCCCGATCACCGACAGAACCGCCAGCCACAGTCCTCACCAGGGCATCTACCCAGCCCACCACCACGACAAACACAGAGAGTGATCAGTCAACTACAATATTTCGTTCCATCGCCAAAAGTGATGCTAAAATCCACTTTGCCCACCTAAACCTCCAGGTCAAGAAGG # Right flank : TGGCGCCCGGCTTTCCCGCCCCAGCCCTGCAACCCGCCGGCCGAGTGGGCGCTCACCCCTGTCCGGGGCCGTTTCCCACATCACACCCCAGCTAGTTGTGTTCCGCAACCAATGAACTTATAGTTGCAGATATCAACCGATTGGGGAGGCGACATGATCGCCACGACAACGGCGTCTGACCTGGTCGAGGCGTTGCGCTGGATCGTGCGGGCCGGGCGGGCGGTGCACAGTGCCGACGACGACCTGCACAACGCGCCCGCCGCGCTGCTCGGGTTGTTGGCTCGGGAGGGTGAGCAGCGGATGGGCAGGCTGGCCGGGGCGCTGGATGTCGATCCGTCCGTGGTGAGCAGGCAGGTGGCGATGCTGTGTGCTGCGGGGTTGGTTTCGCGGCGGCCTGACCCGCAGGACGGGCGGGCGAGCCTGTTGGGGTTGACCGACTCCGGCCGTGCCTGCCTCGATCAGCACCGGGCCCAGTGGGCGGGCAGGCTCACCACCGCCTT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 110849-111306 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYXG01000206.1 Actinokineospora spheciospongiae strain EG49 contig1275_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 110849 29 93.1 32 ................T...........G ACCGCCGCGAAGGCCGCGTGGGACTGGGTGGT 110910 29 96.6 32 ................T............ TGCGGTACCAGTCCGGCCCCGGGGCGCCGGTC 110971 29 100.0 32 ............................. CAGTGCAGGTTGAGAGGTCCGCCGCGGCACGC 111032 29 96.6 32 ...T......................... TGCCACAGGGTGCCCCGTTCCTCGATGTCGGC 111093 29 96.6 32 C............................ TGGCCTTCCCCGCCGACTCCACGCCCGAGGCC 111154 29 89.7 34 ........T.......T.....C...... AAGAACCCCTTTGCCCGGCGTCTCCAACAGCACC 111217 29 96.6 32 ..T.......................... GAGGTGGTCGCGCCGTAGGGGACCGACTGCGG 111278 29 79.3 0 ..T........AT........T....G.T | ========== ====== ====== ====== ============================= ================================== ================== 8 29 93.6 32 GTCCTCCCCGCGCGAGCGGGGCTGTTCCC # Left flank : CGAATCCCAGTACTGCCCCACGTCGAACCGCCCCGACGGCGGCGCCCCCACCGCCTCCCGCCCCTCGGACAGCAGCGACCACAACCCCTCCAGCCCATCAACCCCACCGGGAAAACGACACGACACACCCACGACCGCAATCTTGTCCACCACACGCCGATAGTTCCGGAACCCGACGCCCCCATCCACGCCGCCACAACGGCTCACCCGGATGACCAACCGATCGAGTGACACTTCCCGCCGGAGCCATGCGGGATCGGGCAAGGTCGTTGGATGCCTCCGACGCCGATGTGAGCCGGGGGCAGGTCGTGCCCGCTTCACGCGATGGGGCCAAGTGAGCGCACTCGCGTGGCGTGTTCCTCAGTAGTCGGCGGGCACCGCCGAGACCACAAGAAACGTGCTATACACGGAGAGTGGCTATGCCACTACACAAGTTCGAACCTGGGCAGGAAGTGATGCTAAAACCTGCTTCAGTCACCTAAACGCCCAGGTCAACAAGT # Right flank : TTGAAGCCGGTTCGAGCACAAGCACGGGAGCCCCCATCCGTCGGGACCGCTCGCGGTAGGTGTGCCTGTCAACCGCTGCGGTACCGGGAGCCGTTCGGCAAGCAGGTCATCCGGTGGCCAGGTCGGGGGCGACGAACAGCCGAACCCGCTCTCGGAGCCTTTCACCGATCCCCCTCGGGCGCCCTCCTCCCTCCACGAGGGCCACGAGCACGCCCAGCCGATGAGCCGCAGCCGCCTCCCGCATGCGCGGGACCAACCCGGCCGACCATCTCCACGATCCACCACCGGGTCAACCGTCCGAGCCGTGACGTCGACGGCCTCGTGCGCGGTTGGCCGGGTGAGGGCTCCGCCACCCGCACCTTTCGCCGAACTTGTCGGTCATGATAATCATTGTCAGGTAAATTGTCCCCGCAGATTGGCAGGGCCGCTGTGCCTCTCCTCCCCCCTGGTCGATGGCGGTCCCTGTTCGCCGTCCTGGCCGCCTCGGTCGTGGCGGCCGG # Questionable array : NO Score: 3.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1786-2423 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYXG01000240.1 Actinokineospora spheciospongiae strain EG49 contig1221_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1786 29 96.6 32 ............................G TCGGACTGCACGTTCGCAATCACCGGGGACGC 1847 29 100.0 32 ............................. GCCTGCCGCTGGGTGTCGGTGCTGGTCGCGGT 1908 29 100.0 32 ............................. ACGCGGTGAAAGCCGTTTACTCATCGTTCCTC 1969 29 96.6 32 ............................G GGCGGCAGCGGCAAGACCACCTTTGCCGGGCA 2030 29 100.0 32 ............................. GAAGAACTCAGGCACCAGGACGGGCGAACCGC 2091 29 100.0 32 ............................. AGCCGGTAGAGCAGGTTGCCCTCCCCGTCGCC 2152 29 100.0 32 ............................. AGCGGCGGTGATCACCCTGGCCCGCCGACCGC 2213 29 96.6 32 ............................G GTTGACCCGGACACCCGGGTAGCGGGACTCGT 2274 29 96.6 31 ............................T CCGCCTCCCACCCACCCCCTGCCGCGCGCCC 2334 29 79.3 32 .GTT.......A..C.............G TGCAGCAGCGGGCGCGGCCCGTGACACGCGCG 2395 28 79.3 0 A.............-........CCC.G. | T [2406] ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.0 32 CTCCTCCCCGCGCAGGCGGGGCTGTTCCC # Left flank : CCGCCGCCGACCGAAACTACTGGGGTGTCACAGTCGCCGACGACAACCGCACCTTCTACGCGACGTTGGCCACCGCAGGCCGCACCTGGCTCGTCAAGGGCGACCTCCAAACCCGCACCGCCCACGACGTCATCCAGAACGCCGAATGCCCCTCCCTCTCCCCAGACGGCACCCGAGTCGCCTTCAAGAAACGCCAAGGCCGCCTGGGCGCCTGGGTCCTCAACGTCCTCGACCTGGCCACCGGCAAAACCATCGAAATCCCAGCCACCCAAGGCCTGGACGACCAACCCACCTGGCTCGACAACAACAACATCGCCTACGGCGCAGCCCTCCGAAACGCCAAGGTCCCCTCCATCTACGAAGTCCCCGCCGACGGCAGCAAGCCCCCAACCCTCCTCATCCAGGACGCCCAATCCCCCTCCCCCATCACCTGACCCGGAGGCCCGCCGAAAGTGAATGAAAACCGCCACCAAGCCCAATAAAACCGCAGGTCAACAAGC # Right flank : CCTACTTCCGGAACCACGCGCCCTTCACCGCTTTCCCCGTCCCCACCGCTTCCCCCAACGACACCGGCGCCAACCCCCGCTCCGCCAACCCACCCAGCACCGCCCGAGCCAACCCCTCCCGAGAAAACCCGGGCGCGGGCCCGTCATCCACCCCCACGTCCAACCCAGCGTGCCCGTCGTGCATCAGGATCACATCCCCCGCCGAGGCCCCCGCCAATGTCCGCTCCGCCACCTCTCCCACCGGATCGTCCTGCCAGTCGTACCCGGTCCGGTTCCACACCACCGATTCCAGCCCACACCGCCGGATCGCCGCCCACGTGGCAGGTTGCTGCGCCCCGTACGGCGGCCGGAACCACCGCACCGGTGCCCCCAACATCTGCTCCAGCCGTTCCTTGCCCTCCCGGGTCCGCCGCAGCACCTCCCCGGGCGACAGCGTCGTCAGTCGCACGTGGTCGATCCCGTGCAGTGCCACCTCGTGCCCGGCGGCCACGATCTCCGCC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCAGGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 115146-115723 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYXG01000051.1 Actinokineospora spheciospongiae strain EG49 contig1288_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 115146 29 96.6 32 ..T.......................... GCCTCCGTGGCCCGCGCGCTGGCCTGGGCCAA 115207 29 96.6 32 ..T.......................... CCCGCGTGGCGCCGGAACTTCTTCGGTGACGC 115268 29 96.6 32 ............................T TCGCCGACGAACAGTACAAGTCGGTGCGTTTC 115329 29 100.0 32 ............................. TGCTGCTCACCATCATGGAACGGGCGGCCCTC 115390 29 100.0 32 ............................. GGGCGGGCCTGCGACCGGAACGGCGTCCCGTT 115451 29 96.6 32 ............................G TACGCAGCGGGGGCGGCTTGTGCACCCGGTTG 115512 29 100.0 32 ............................. GTCCTGGTCTCCGTCGGGCAGTTCCAGCGCGA 115573 29 93.1 32 ............T...............G GATGTGGTGGCGCCGAAGGGCACCGACTGGGG 115634 29 93.1 32 .............A.......T....... GCTTCCCCACGCGAGGCAATACCCCAGCGTGG 115695 29 86.2 0 ...T...................ACC... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.9 32 GTCCTCCCCGCGCGAGCGGGGCTGTTCCC # Left flank : CTGCTCGACCGCCTCCAACTTCTCCTTCTCCGAACTGAGCTTCCGCGCCTTCCCCAACCCCTGCGCCGCCGTGCGCCCCGCCTCGGCCCAGGTCTTGACGTCCACGGCGGTGGTGAGCAGGTTCGGGTCACCGGCGGGGTCGAACAGGTCGGCCGGGGTGAACACGGTCTTCAGCTTCTCGCGCACGGCGGGCTTGATGTCGTCATAGGACTTCGGCTTCGGGTGGGCACTCGTCATCGGGGACTCCGGTCGGTGGGGTGTGCTGTGGCGCGCTCCCCCGAACGCCCGGCCAACCGCCGCGCAGCCCGACAATCGTACGCCGCACGCCCGCTCGCGGGAAGATCATTGCTGGATCTGCTCCCCGCAAGCGCGCCATTCGGCATTTACAGGCCAACACGGGCGGGGAACAGACGGTGATCAACCCACCACGCAGTTTCGAATCCCCGCCGGAAGTGATGCTAGATTTGCCTCCGGGCACCGAAAACCGCAGGTCAAGAAGT # Right flank : CACCACAGGCGCAACCGGAGGACCTCAGCCCCTTCCAACACAGGTGCGCCGGCGGGTACGAGGGCAGGTCCGGTCAGCCTTGCGCGCTCGGCGCGGGGCGCTGGGTCGTCATGCGCTCAAGGCGCCACGGGTGGGCGCAGCATGCACACGGGCTCATGCGACCTGCCCGGCCCAGCCCGGGAGCGGGGCTCACCAGGAGCGGGCGCCGAGGTTGCGGGAGACGGATCGGGCGGCGTCGCGGACGGTGGCGATGAGGTCGGGGCGGGGGGTGCGGTCCGGGGCGCAGACGCGTTCGATGGCGCCGGAGATGCCGATGGCGCCGACGACCACTCCCCGGTCGTCGTGGATGGGGGCGGCGATGCCTGCTTCGCCGGGGACCAGTTCTTCGACGTCGGCGGACCAGTTCTGGGTGCGGACGCGCTTGAGGTCCTGGAGGACGGCTCGGCGGGTGGTGTGGGTGTGCGGGGTGACCGGGGTCAGTTCCAGGTCGTCGAGGATGG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGCTGTTCCC # Alternate repeat : GTTCTCCCCGCGCGAGCGGGGCTGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 108734-108522 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYXG01000081.1 Actinokineospora spheciospongiae strain EG49 contig1288_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108733 29 96.6 32 ............................G TCCAGGCCGCACCCGGGCTCCCACTGGTCGTA 108672 29 100.0 32 ............................. TACCTGGTCGGCATCCTGACCGCGGTCGCCGG 108611 29 100.0 32 ............................. CCGCTGACCGGCACTCCGCGAAGGAGCACGCC 108550 29 93.1 0 ...........................GG | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTCTTCCCCGCGCGAGCGGGGCTGTTCCC # Left flank : CCGACTGCTTCCGGAAGACGGCCAGGGTGACCGAGTTGAGGCTGAGCGGCAGGTACAGGGTCCACTGCCGCAGTTCCGGCGCCACGTCGGCCACCGCTCGGTGGCGGGCCAGCAGGCCCTTGGCGGCGAACCCGGCGCCGATCGCGGCCAGTCCGGCGAGCACCCGCCTCGGTGTTGAGCTCACGGTGTCGTGCCTCCTCCATCAAACCGCCCGCACGCGCTCGGTCGGGCGGTTCAGCGGTGCCGCTCCTGGTCGTACTCAGTGGAAGCGCCCATGCCTCGAAGAACACGGGCACTGCCCTCGCAGAAGCCTGCCAGGTCGTCCGCTCGCTGTGGGCCCGGGTGCCGGCAGCGCCCCGCCATACTCCTGACCGCCCCGCCACCACCGCGCGCCGAAAATCGTGCCCAACACAGTAAGTAACCAGGGGACTACACTTGCCCGGTTCGGCGCGAAAGTGATGCTAAAATCCACTTCGAGCATCTAAAGGCGCAGGTCAAGA # Right flank : CGTGGTTCGAGGTCGCGGCCTGCGGTGGTTCTCGGGGCGCTCAGGTCCCGACCGGGTGATCAGACGCGTTGCCGCGATTCTGAATCATCGGGTGGGTTGTGCTCTGTGCTGTGGGGGCGGACCGGGATACGATCATGGTCCGGAGTTCACGTCCGAGGAACGGGAGGCACGCGTCAGGTGCGGGACCGTGGCGGCTGCAGGCTGCGGCGTTCGTCCCGCGACGCGGCGAGATGATGGTTGGCATCAAGATCGAGGCGGTGGAACGGTCGGTCGACGACGTCTTCAGCGAGGACTACCGCTTCACCATTCCGCTCTACCAGCGTCCCTACGCGTGGACGACCGAGCAGGCGGGGGAACTCTTCGACGACTTGGTCGTGGCGGCGTCCGGGGACGCGCCCCTGGAGGAGGTCGATCCGTACTTCCTCGGCAGCATCGTCCTGATCAAGGAGGTGGGGAAGCCCGATTCGCAGGTGGTGGACGGGCAGCAGCGCCTCACCACC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //