Array 1 284668-282658 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOAF01000003.1 Escherichia coli strain MOD1-EC5867 MOD1-EC5867_3_length_473795_cov_28.5747, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 284667 28 100.0 32 ............................ TGAAAGTTGACGCCAGCGGCGACCCGCGTCAC 284607 28 100.0 32 ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 284547 28 100.0 32 ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 284487 28 100.0 32 ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 284427 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 284367 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 284307 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 284247 28 100.0 32 ............................ TCGAGCGTACCAGGTTTACTGTCGTCATATAC 284187 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 284127 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 284066 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 284006 28 100.0 32 ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 283946 28 100.0 32 ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 283886 28 100.0 32 ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 283826 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 283766 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 283706 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 283646 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 283586 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 283526 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 283466 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 283406 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 283346 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 283286 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 283226 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 283166 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 283106 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 283046 28 100.0 33 ............................ GTTCGACGATTGAGTCCGCCGCTGTTGTTTGAT 282985 28 100.0 32 ............................ CGGCGGACCACTCATTATCGTATAAATCTTTC 282925 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 282865 28 100.0 32 ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 282805 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 282745 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 282685 27 92.9 0 .......................C-... | T [282666] ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 294295-293725 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOAF01000003.1 Escherichia coli strain MOD1-EC5867 MOD1-EC5867_3_length_473795_cov_28.5747, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 294294 28 100.0 32 ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 294234 28 100.0 32 ............................ AAAACGGCGGGTTTTTTACGCGTGTGGCTGCA 294174 28 100.0 32 ............................ GTTAACCGTTTCACACTTAACACTATGAACCG 294114 28 100.0 32 ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 294054 28 100.0 32 ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 293994 28 100.0 32 ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 293934 28 100.0 32 ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 293874 28 100.0 32 ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 293814 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 293754 28 85.7 0 ....................T...C.CT | C,A [293728,293731] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //