Array 1 329023-330270 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPQE01000008.1 Salmonella enterica subsp. enterica serovar Corvallis strain NPHL 15376 MRSN624165_contig00008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 329023 29 100.0 32 ............................. TGCCTCAAGATTTTGAGCGGACGGGAGCTGGC 329084 29 100.0 32 ............................. GATGCATGGGAGCACGGTAAACCACTGGCGCA 329145 29 100.0 32 ............................. CGCATATAAAGCTGGCCTTACCGCTGGCTGGA 329206 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 329267 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 329328 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 329389 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 329450 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 329511 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 329572 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 329633 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 329694 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 329755 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 329816 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 329877 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 329938 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 329999 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 330060 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 330121 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 330182 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 330243 28 86.2 0 .........A..T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 346817-350446 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPQE01000008.1 Salmonella enterica subsp. enterica serovar Corvallis strain NPHL 15376 MRSN624165_contig00008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 346817 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 346878 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 346939 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 347000 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 347061 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 347122 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 347183 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 347244 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 347305 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 347366 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 347427 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 347488 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 347549 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 347610 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 347671 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 347732 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 347793 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 347854 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 347915 29 100.0 32 ............................. CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 347976 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGCC 348037 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 348098 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 348159 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 348220 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 348281 29 100.0 32 ............................. ACAGCTTGAACCGATTGAATTCGGACAGTTAT 348342 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 348403 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 348464 29 100.0 32 ............................. TACAGTAAAACGCTAAACTTTTTTATTGTCGC 348525 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 348586 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 348647 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 348708 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 348769 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 348830 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 348891 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 348952 29 100.0 32 ............................. CAGCGACACCACCCGCCCGGGGACATTGCGCA 349013 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 349074 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 349135 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 349196 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 349257 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 349318 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 349379 29 100.0 32 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGGT 349440 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 349501 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 349562 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 349623 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 349684 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 349745 29 100.0 32 ............................. GCCGGCGGCAGTGGTTAATATCAGAAATAAGG 349806 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 349867 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 349928 29 100.0 32 ............................. GCGACCTGACTGAATCTCCTTTTTCAGTTGGG 349989 29 100.0 32 ............................. GTCTTTTTCCCTGCCCATCTTTCAGCTTCTAA 350050 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGAAATGATGGTC 350111 29 100.0 32 ............................. CGGGGGTTTCCACTCAAATACAGGTAGAACCA 350172 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 350233 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 350294 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 350355 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 350417 29 96.6 0 ............T................ | A [350444] ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //