Array 1 16079-17105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAJBM010000012.1 Lactobacillus jensenii strain VA04-2AN NODE_12_length_44270_cov_87.218834, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 16079 36 100.0 31 .................................... TCGATTTCTTGTTGACCTGCACCAACTTCGT 16146 36 100.0 30 .................................... CAACTGCAGCATTAAACGCCCATTGAATAG 16212 36 100.0 30 .................................... AAGACGCAGAAACAAACGGCATCATAGTCA 16278 36 100.0 30 .................................... TTCCAATGGTGAAACAAGAGTTATCAAATA 16344 36 100.0 30 .................................... TGTTTAAAGTAGTAAACAAGACTATTGAGC 16410 36 100.0 30 .................................... CTCTATTTTAATCTGCATACATACATGTAA 16476 36 100.0 30 .................................... AAGACAATACGTAATAAGGATATTGCACAA 16542 36 100.0 30 .................................... AATATATCAAGCCTGAAGCATTAGATGGCT 16608 36 100.0 30 .................................... CTAAAGCTTTTTCAGCATCATTTTTAGTGT 16674 36 100.0 30 .................................... TACGCCTAGTGGCTATATTGACTTAACTAG 16740 36 100.0 30 .................................... AAATTTTTGCAGGAAATTGCCGATGAGCTA 16806 36 100.0 30 .................................... GGCTAAAGACAATAAGATTAATGTTTCTAA 16872 36 100.0 30 .................................... ACTACCAGAATGGGCAGTTGCAGAAAAGAT 16938 36 100.0 30 .................................... GAAAACTTGAAGTCGCAACTCAATAGCGAG 17004 36 100.0 30 .................................... AAAAGTAGTCGATGAATATTTAAGGTTAGT 17070 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== =============================== ================== 16 36 99.8 30 GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Left flank : CACAGGATTATCTTAATTCTTATCAGAATAAGATTATTTCAAATCTGTTTGATACTTTAAATGAAAATCAGAGAAATAAAATATTTAATACGTGGCGTCAGCTGAGTACTGATATTCAAGATATAATATTTATGACTGATTTACCAATTGAAGTTGGTGAAAATCTAGATTTAAAGAAGCTATTCAAATTTGATGGAATTCATTTTGATGATTCTGTATTAAGTGATCCTTATGCTATAATTGAAACAGTTGTTAAAATTCATATTGAATGTAAATTGAATTCGGTTGTTACTTTTGCAAACGTAAGTCATTATCTTACAAAAGAACAATTGAATAACTTAATTACCTTTATAAACGAAGTAAATATGCCTTTGATATTAATAGAATTTTCATCTTCAGATTTTAAGGTTGTTAGTGGGGATGCAAGAGTCTGTTATATTGATGAGGATTTTGTCGACTGGTACTGATTTTAAATCTGAGAAGCTGATGATAAAATGTCG # Right flank : AGTAACAAAAACCAATTTAATTAATATGATCATATTTTAATTTGAGGAGAAAACTAAGTATGTGGACATTTCTTAAATTTTTTCAGACACCAGTAGGCTATTTAATTGGAATGGCTATTCTTGTCATATTGCAATACGTGTATGAATGGATAAGAGACGAGCGCTAAAATATTGTTTGGTTTATTGGCAATTAATATACTTTAGAAAGCTGCAAAACACTATAACTTATAGGAGATAAAAATGGAAGGTTTAGCATATGTTATTCTATTTATAGGAGCTTTTATATATTACTATTGTAAAAATAACCGTAAAAAATAATACGATTTTTAAAAGTTACTGAGGGGGCATAATATGGATGCAATTATTGATTTCTTTACTAACCCTATATGGATTACATTTATAACAATTTTATATTTTTCTATGGAGTTTATAGAAAATAAGCGAAAAAAATAGCGCTTTTTTATTGGTAAAGTAATAACAATTATGTCAGTTTTAAAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //