Array 1 1270-203 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIOWG010000008.1 Escherichia coli strain GDXB17-2 NODE_8_length_73507_cov_74.816, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1269 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 1208 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 1147 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 1086 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 1025 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 964 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 903 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 842 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 781 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 720 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 659 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 598 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 537 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 476 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 414 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 353 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 292 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 231 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17532-16771 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIOWG010000091.1 Escherichia coli strain GDXB17-2 NODE_91_length_17660_cov_71.9037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17531 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 17470 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 17409 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 17348 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 17287 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 17226 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 17165 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 17104 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 17043 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 16982 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 16921 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 16860 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 16799 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGG # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //