Array 1 275277-275694 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQRL01000001.1 Listeria monocytogenes strain ICDC-LM1870 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 275277 29 100.0 34 ............................. TTTCCCCAACTGCGCCCTGTTTTAATTGCTTAAC 275340 29 100.0 37 ............................. ATATACTGGCAAGTTTATCTTGATGTTTCTGACTATC 275406 29 100.0 35 ............................. CGTATATTTAATTTTCGGCATATAATCCCATCAAT 275470 29 100.0 37 ............................. CTGTTCATTTATTTTTCAGTCCTATGTTCATTGCCTC 275536 29 100.0 36 ............................. CCGGAAGATTTAGCAGTGGATCCATTTCCGTTTGAA 275601 29 100.0 37 ............................. AATCGTCACGATGGGAAAGTCGTTGATAGCGCGCCAC 275667 28 79.3 0 ......A......-..CAT....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 97.0 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTAGGGGAAGGGAAGCTTGGCGGTATTTGCTTGGGAAAATTTTCCGGATAAGAGGAGATTTTAGATGTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCCCATTCAGATTTAACTCCATCACCATCCATCAAAACCAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCAAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 291308-293089 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQRL01000001.1 Listeria monocytogenes strain ICDC-LM1870 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 291308 29 100.0 34 ............................. TTTTTTTGGCTTTTTCTTTAGACACTTTTAACTT 291371 29 100.0 35 ............................. TTGTTTGGAAAACGTGCGCGCCAGCCTTCTTTTTT 291435 29 100.0 36 ............................. TGTATTCTTATAATGAGCTTTGCAAAATGGTTCCCC 291500 29 100.0 37 ............................. TCACCAATTCATGTCCTACTAGCTTCGGACGTTTCAT 291566 29 100.0 35 ............................. ACGGTTGAATAAAACGAATAATAAACTGCATGTAT 291630 29 100.0 34 ............................. AAGCTAGTCGCGAACAATTAAGCGCGTTAGCCCC 291693 29 100.0 36 ............................. CAACGCTTTTTATTGATATGATACTATATGACATTA 291758 29 100.0 37 ............................. TGCTTCTTGCTGTTCTTTCTCTTTTTTAAGATTTCAT 291824 29 100.0 36 ............................. GTCTTTTAGCCTGCTTTTGGTTAAAGTGGGGTTGTC 291889 29 100.0 36 ............................. TACTTAGCACCTACAAGACTAGCATCACCCTGCGCA 291954 29 100.0 37 ............................. ATCTACAGAACTCTCCGACTCTTGCACTTCCGTGATA 292020 29 100.0 37 ............................. ATTGGACCGGAAACTGCAGGCGACTTACTTAATTATC 292086 29 100.0 37 ............................. ACAGTCAAATGATGATGACCAACTTCCTCTGCCAAAG 292152 29 100.0 38 ............................. TACATTAGTGTATCGAAATCCGTATCGAAAATTTCTAC 292219 29 100.0 36 ............................. AAAATTGATCATCAGGTAAACTAGCAACATCAAGTT 292284 29 100.0 36 ............................. GGAAACGCCGTCTTCCGTCGTTCTAAATTTAAAACT 292349 29 100.0 34 ............................. TATAAATTAAGGATAAGGAGTGTTTTTGGATGGC 292412 29 100.0 35 ............................. CTTTCTGGAGCAACTTTTAAAGTGAAAGACAGTGA 292476 29 100.0 36 ............................. TATCTTTATCTGTAGCTAGTTTGAAATCATCTTCAT 292541 29 100.0 37 ............................. GAAAGTAAAGAAATCAAGCCTAAATTTGTTTTCCGGT 292607 29 100.0 36 ............................. GGTTTTAACTTCTAGGTTATTTTGTGCATTTTTTGG 292672 29 100.0 34 ............................. TATTCTTTTAAAGTTGGCGGTAGTATGGTAACTA 292735 29 100.0 36 ............................. ATGTCTGCGTGCCCCAGTCTCTCTTGGATTACTTTG 292800 29 100.0 36 ............................. TTTTCAATGTGCGAGTATGCTCCTCTGGAAATTCCT 292865 29 100.0 37 ............................. ATCTTGAACCGCTCCCCATGCTTTTTTAGCGCCATCA 292931 29 100.0 35 ............................. TAACAATGAAAAACGGATTTACAAAATTAGCGTCC 292995 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 293060 29 93.1 0 .......................A....C | C [293083] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAATATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTATAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACTCTGCCCCCGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //