Array 1 13072-11517 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXKZ01000001.1 Salmonella enterica strain BCW_1978 NODE_1_length_387204_cov_2.94668, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13071 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 13010 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 12949 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 12888 29 100.0 32 ............................. GCTCCGCAACGGTACAGAGCAAAAAAACACGC 12827 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 12766 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 12705 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 12644 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 12583 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 12522 29 100.0 32 ............................. TCGGTCGATCTGCATATCGATACCCGCGGTTA 12461 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 12400 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 12339 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 12278 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 12217 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 12156 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 12095 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 12034 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 11973 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 11912 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 11851 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 11790 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 11729 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 11668 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 11607 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 11546 29 93.1 0 A...........T................ | A [11519] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31087-29778 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXKZ01000001.1 Salmonella enterica strain BCW_1978 NODE_1_length_387204_cov_2.94668, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31086 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 31025 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 30964 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 30903 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 30842 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 30781 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 30720 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 30659 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 30598 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 30537 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 30476 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 30415 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 30354 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 30293 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 30232 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 30171 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 30110 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 30049 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 29988 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 29927 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 29866 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 29805 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //