Array 1 11489-6732 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGYR010000002.1 Pelistega ratti strain NLN82 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 11488 32 100.0 35 ................................ CACTGGCAGATATTAGGCTATGAAAGCGTACAACA 11421 32 100.0 39 ................................ TTTGTCAAATGGTGCGAAATTCCGCAAGTGGTTGATTGC 11350 32 100.0 35 ................................ AGCTCATACAATAAACCATCCGATCCTTTAGCTAA 11283 32 100.0 34 ................................ CATTTTTTTCTTTCCTTTTTGGTTAGTGGTTAGT 11217 32 100.0 35 ................................ TGCAAACCCTCTCATTTTACATCGTGCTTATTAAT 11150 32 100.0 34 ................................ GTCTATCTGCTATGGGAGTAACAAGGTTTGCTCA 11084 32 100.0 34 ................................ ATTTTCTATACGACAACCGCATAGAGCCATTAGC 11018 32 100.0 36 ................................ TTTAACGTGCTGATTTCCTTTTGCTTGTCTTTGCAA 10950 32 100.0 37 ................................ ACCCTGTGGCAGGCGTTAAGATTAACACGCCTGCTAA 10881 32 100.0 34 ................................ TATTTAAAAGCCATGGGTAAGGGAGATGCCAATA 10815 32 100.0 35 ................................ ATTTTAAAAATCCTTTAATACTGCTGTTGATAAAG 10748 32 100.0 34 ................................ TCTATCAATATAAGAATCACCTGAAAGCTTTTGA 10682 32 100.0 33 ................................ TTTGCAAAGCCTCTTATTTTACACGGTGCTTAT 10617 32 100.0 34 ................................ AGACTGAGCAACCGTATGTTTAAGATAGTGCTGC 10551 32 100.0 34 ................................ ACCACGCAAGAAATCACTGGCACCGTCAAAGAAT 10485 32 100.0 35 ................................ CTCTCTTTAACGTGTTGATTTGACCTTGCTTGTCT 10418 32 100.0 34 ................................ GTGAAAGTTTTTACTGAATGGGGGTATTTAAGCG 10352 32 100.0 34 ................................ AAAAAGAAAACAACCCTATATTACTTTACTGAGA 10286 32 100.0 36 ................................ CATACTGCCCCCGTTGCCACTCCTGCACCGCCTCCC 10218 32 100.0 35 ................................ TTTTTATGGCTATCCAATCAAATAGACTTGGTTAG 10151 32 100.0 36 ................................ CGCCCCACTGCCCCCTCAACAGATCCACTTTACCCC 10083 32 100.0 34 ................................ AACGTGATTTTTTACATCAGGCGGATTTGTCAAA 10017 32 100.0 33 ................................ AACGAAGAATTAACAGTTTAATAGTTAGTACCA 9952 32 100.0 35 ................................ TACCTGTAATAAAGCTGTTATTAAGTCTGCATTGG 9885 32 100.0 34 ................................ TATTTACTCATACGGCAGAGTTTATACACTACTA 9819 32 100.0 36 ................................ TTTTGATACTAATCAAAGCGGAACAGCCTTTAATGT 9751 32 100.0 33 ................................ ACGAAAGAAAGCACCTCATCAATGAAAGCGTCT 9686 32 100.0 34 ................................ AATAAATCGCGTATTTCATCCCACTCTCTTATTA 9620 32 100.0 36 ................................ AACTTCTTCTACTGTCATGTAGAATAAATTATTTGC 9552 32 100.0 34 ................................ ACGGTTCATTATTCGCATGTTTAAATTCCTTTGG 9486 32 100.0 37 ................................ TAGAGAGGGTAGGGCGATCTGGTTGAGGGGGCGGCGG 9417 32 100.0 35 ................................ TACATCAGGCGGATTTGTCAGATGGTGCGAAATTC 9350 32 100.0 34 ................................ CATTTTTTAAATCCTTTGGCACCGTGTGCCGTTA 9284 32 100.0 36 ................................ TTCTTGCAAAACTCGAAACCCTTATAAATCAAGCAC 9216 32 100.0 35 ................................ ACGTTACCCAAGCTCTGCAATGTAAAATGTAAACT 9149 32 100.0 33 ................................ GATTGCTAGGTGCTGAAGACTAATTTATTAACC 9084 32 100.0 35 ................................ TCTATTAGTTTAGTAAGGTTAAACATTAAACGTTT 9017 32 100.0 34 ................................ AACAATCAGATTAAAGGCACAACGCCCGAAAACC 8951 32 100.0 34 ................................ AATTAGGGCAAGCGTTAGGTTCTGGTGTGTTGCG 8885 32 100.0 33 ................................ TTAGATATGATCGCCTGCATTGTTATATTTATA 8820 32 100.0 34 ................................ TACTGAATAAAATGTATATGTAAGTGTATTCATC 8754 32 100.0 35 ................................ ATTTTCTGTATCAAAGAAATCATCAACCATTTTTT 8687 32 100.0 34 ................................ CTACCCATTTCAAGCCGTGAATATATAGCGTTCA 8621 32 100.0 34 ................................ TATTAAATGCACTGATAGGAACGGTACATTTTTA 8555 32 100.0 35 ................................ TTCATTATGGTTAGGTTAATCATTAAACGTTAAGC 8488 32 100.0 34 ................................ AGAAGCATTAGCAAAACGTATTAATGATAGTCGA 8422 32 100.0 33 ................................ TTTGCCATCTACTACTAAATTGTGGGCGTAAAC 8357 32 100.0 37 ................................ TACATAGTGCTTATTAATTAATATTATTTCACACTGC 8288 32 100.0 34 ................................ TGTTGAACAGATTGAACCTAACAAAGCCAGTCGC 8222 32 100.0 35 ................................ ATTACAAGCCCTGCTTTTGCACAACTTGAAAAGGT 8155 32 100.0 33 ................................ AAGTATTTGGGGCAACCCCTATAGAGTGTCCTA 8090 32 100.0 34 ................................ GGTCTGCTCATCAAGTGCCGCATCAGCCTTTGCA 8024 32 100.0 34 ................................ ACAAGAAAACCATTAAAGAAATTGTTAGTATTAT 7958 32 100.0 33 ................................ CATTTCTTATACTCCTGCAATATCTAAAGGTAA 7893 32 100.0 34 ................................ GGTCTGCTCATCAAGTGCCGCATCAGCCTTTGCA 7827 32 100.0 36 ................................ AGGATTAGGTAAGAAAATCTTAGTTGGTGTTTGCTG 7759 32 100.0 35 ................................ AGGAGGCATACAAGCCATTAATCCTAATCTAGTAC 7692 32 100.0 34 ................................ AAGAGTAAACATGATGACTTTATCGATACTATTT 7626 32 100.0 34 ................................ ATCAGTAAAGCACGTCCTAATAATAAAACCGCTT 7560 32 100.0 34 ................................ GTCTGTTGTGGGTGCAACATTGTCTAAAAGACTA 7494 32 100.0 33 ................................ GTTGAGCCTGATGTTACTATTCGCGAGTATCAT 7429 32 100.0 34 ................................ AGGTATGGATAAACAAACAGGACGTTGGTTAAGT 7363 32 100.0 34 ................................ AATAAAATTCAATTAGATAGTGTAAAAATCCAAT 7297 32 100.0 35 ................................ TAAAAAGGACTTTACGCTACCACGCGCTAATATAG 7230 32 100.0 33 ................................ TTCGGTCTTAGTGGTAAGTTTGGGTAAGGTGAG 7165 32 96.9 35 A............................... TGAAACGGAAACTGAGGTGATTATTGATGCCTCTT 7098 32 100.0 36 ................................ TTTTACATCAACTTTTTGCATATCAAACTGACCATC 7030 32 100.0 35 ................................ ACCAACGCCTGTGGCACCCAAGATTAAGGTATGAC 6963 32 100.0 37 ................................ ACAAGCTACGGTATGAGTTACAAGAGGCTAGGGATAA 6894 32 100.0 34 ................................ TATTGCTGTTTGAGGACAAAGATGAATCAGTTTC 6828 32 100.0 35 ................................ TAAAGAGGAAACGGCAATTTTACATCTGGCAAATC 6761 30 84.4 0 ......................A.--....GT | ========== ====== ====== ====== ================================ ======================================= ================== 72 32 99.7 35 GCACCTACCTTCGGGTGGGTGTGTGTTGAAAC # Left flank : ATGAAGAGAGAAATTTAATAGATGTTAATGTTAATTACTTATGATATATCATTTGAAGATATTGGTGGACAAAGTAGGTTAAGACGTATTGCTAAATGCTGTTTAGATTATGGAGTGCGAGTACAATATTCTGTGTTTGAATGTGATGTAACTCCAGATTAATGGGTAAAGTTAAAGAGTAATCTATTAGAAATTTATGATCCAAAGAGTGATTCATTAAGATTCTATCATTTAGGTAGTAAATGGCGGAATAAAGTTGAACATCATGGAGTAAAATCTGCAATTGATATTTTTAAGGATACATTAGTTGTATAGTGCTAACCTATAGTTCTCATTATAATATAGAGAGGTTAGCGATAATAAAAGTTCTTTAATAATCAGGGTATTATAAATTTAAGTATAGTAATAAGGTCTATGCTATACTGTAAAACTTCTTCCATTTATGTATTAGCGAAATAGGGCTTGGAAAGCCTTAGATAGCCGTACTTTAAATAATGGGA # Right flank : ATATACAATTATAGAGTGGTTAAAATAGTTTCTGTTTTTGTTGTGTCTAGGCTATGTCCTCAATTTAAAAATGAGCAAAAAGCCACCATAATAACCACTATAAACTTTACTTAATTTTGTAGATAATGACGAGAATAGCATTAACAGACCTACTTTGGGAACAACTTCAAATAACGATGAAAAATCATGGTTGCCATGAATGGAAAAATAATCGCATGGTTATGGAAGCTATTTTGTGGAAATTACGTACAGGAGCACCTTGGCGAGATATTCCCTCCACACTTTGTCCTTGGAAGACAGCCTATAATCGTTTTAATCGCTGGGCAAAGAAGGGTTCATGGGAGAAATTTTTTTTAGCCTACGAACAGAAATTGATACGGAATGGGTATTCACCGACGCAAGTTATGTACGGTGTCATCAGCATGCAAGTGGAGCTTGGCGTGGTCAAGAGCGAGCAATTGGATAAAGCCACGGTGGAAGAACTACAAAAATCCATTTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCACCTACCTTCGGGTGGGTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //