Array 1 141127-137450 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPF01000002.1 Streptococcus gordonii strain BCC29 D8808_contig002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 141126 32 100.0 33 ................................ TGTTGGTGCTGTCGGCTTTAAACTGGCAAGCTC 141061 32 100.0 34 ................................ GCTAAAGGTATCGCTAACGTCATGAAAGCCTTTG 140995 32 100.0 35 ................................ AATATCGCCTTTTTCGTATCGGAAAATAGTTGATC 140928 32 100.0 33 ................................ CAAATTGGGGGGTGAAGATTTGAAGCCTATTTT 140863 32 100.0 35 ................................ ATGTTTCTGCAAAAATATCAGGCTTGCACGGATAA 140796 32 100.0 33 ................................ TCCGACAATGACTGTATTGCCTTTGCCGTCCTT 140731 32 100.0 34 ................................ TTTGAAATGCGGGTTAACATTATCTTGGATCCTA 140665 32 100.0 34 ................................ ATGAAGACCAACAAACCAGCAAAAACATTGACGG 140599 32 100.0 33 ................................ GTGAGTATAGTAATAATCTACGATTGGTTTATA 140534 32 100.0 34 ................................ AGGGACTATTTCCCAAGCCTTGAAAGACAATGGA 140468 32 100.0 34 ................................ AGATAAATGGTCTGGTGTATTCCTGACCGAGTTC 140402 32 100.0 34 ................................ TATTTGCCTTCCTTGTCTTGGTTGGTATCGTTAA 140336 32 100.0 35 ................................ ATCTATTACGGCTATTTAAACGGAGCGGACAGCTT 140269 32 100.0 34 ................................ CTAATGAGCTGGGCGGACTTTATGAAGCTGATGA 140203 32 100.0 34 ................................ TTCTTGTAGCCGTCCGGAATAAGCAGGCTGAACT 140137 32 100.0 35 ................................ TTCAAATCTTCCAGACCATTCTTCCCTTGAAATCG 140070 32 100.0 34 ................................ ATAAAACATGAACAAAAGAAAGGAGAAACGCGAG 140004 32 100.0 33 ................................ TCTTGCGCGATGACTTTCGCATTAGCGTCTAAA 139939 32 100.0 34 ................................ TCCACTTGGTCAGACATCGATACGACAGGGAGTA 139873 32 100.0 36 ................................ AGTCATAATTACACTCCGCTAACTTTATTGTTTTTA 139805 32 100.0 34 ................................ ATTGTTGTCTTTAAGTCAGAGTGACCAAGACGAT 139739 32 100.0 36 ................................ GCCAAAACATTTTTTATGATTTATTTCTTAGTTGTT 139671 32 100.0 33 ................................ AATTTGAGGAAAACAAGAAATATGAAATCGAGG 139606 32 100.0 35 ................................ GCAAATTGTCTATAACACACCTTATGCCAGAGCTC 139539 32 100.0 36 ................................ CAAAAATTTGGAGAGAAAAAATCAGTTGTTTATATG 139471 32 100.0 36 ................................ GATTTTTGAAAAGTTGCAAGTTGCATCTTCATAAAA 139403 32 100.0 34 ................................ TCAAGGCTAGAGCCTGTTTGGTTTTTCAAACTTT 139337 32 100.0 34 ................................ ATAGAAAAATAGCCTTTCCACGCTGTCTCTGCGA 139271 32 100.0 34 ................................ ACCAGCCAAGCCATTTTTCTCACAATTCTTCAAG 139205 32 100.0 33 ................................ CCATTCCCTAACCTCTTTAATAAATAATTTAAT 139140 32 100.0 33 ................................ CCATTCCCTAACCTCTTTAATAAATAATTTAAT 139075 32 100.0 34 ................................ TTGCAACATCTAAACGTGGCGGATTATAAACAGA 139009 32 100.0 36 ................................ AAAATTCGATAGGAGGTAGCTTAAACGTGCCACAAG 138941 32 100.0 35 ................................ GAGTCACGATTGAAAATAATAACTCTACCACAGGC 138874 32 100.0 35 ................................ CGCTCCGCTGTTTCTTTCAAGTTTTTAGCAATCTC 138807 32 100.0 35 ................................ TTCCTTGTGAGTCATTACAGGTCTGTTAAATATCG 138740 32 100.0 34 ................................ TTGGTGAATCACAAGAAGCATTGGAAGCAATCAA 138674 32 100.0 33 ................................ TGATGATATGGACTGGATAGATTGGGCTTTACT 138609 32 100.0 34 ................................ TTCATTGCCTCATGCATAGTATCATTCTACGCAG 138543 32 100.0 34 ................................ ATTTGAATGGAGATAAAGATAGTCCTGTTATTTT 138477 32 100.0 34 ................................ TCTGCGTGTTTTATCGGCGTCTTTTAGTTGTTCA 138411 32 100.0 34 ................................ AGAAGCAACTGGTGACGATAAGACCAACAAGAAA 138345 32 100.0 35 ................................ AATCCACATTGTATTTTCTCCTCATTTTTGGTAAA 138278 32 100.0 35 ................................ CTACGAATCCTTATGGAGGTCGGCCATTGGCCTCC 138211 32 100.0 33 ................................ CTGAATAAACTCATTAGCTGTCGTGTCATCCAC 138146 32 100.0 34 ................................ ATCACGGGCATATTGAAACAGGACAAGATTTCTT 138080 32 100.0 35 ................................ ATAAACCTCAGCCAATGGTACTCTATCGCCAACCT 138013 32 100.0 34 ................................ AGGATTCGGTCGGTGATGTGGTCGTTGTGTTGAT 137947 32 100.0 33 ................................ ACGGTCGATTCTATTCTTTAAAAATTTGGGAAC 137882 32 100.0 34 ................................ TTCGATCTCAATAATCTTCAGCGCTTGCGGAGTG 137816 32 100.0 36 ................................ CAGAAGTAAAATTCCCTCATCATATCAAAACGCCAG 137748 32 100.0 35 ................................ TAGCTGGTATCTTTGCTTTGCTAGGGCCAGCATTG 137681 32 100.0 34 ................................ ACTGTATTCTTACGACATTACAGAGCTTTCAACT 137615 32 100.0 35 ................................ ATTTTAATCATCCTTTCGTTTTAAATAATCAGGCA 137548 32 100.0 35 ................................ ATTTAAGCTATATCCAAAAACAAATAGTTTTAGAT 137481 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 56 32 100.0 34 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : CAAGACAATCCGTGGAGAATTGGAATCCTATCCACCGTTTTTAATATAGGAGCCGGTTTATGATGGTATTAGTAACATATGATGTGAATACTGAAACTGCGCAAGGCAGGAAAAGATTACGTCATGTGGCAAAATTATGCGTTGATTATGGGCAACGCGTTCAGAATTCAGTTTTTGAATGCTCAGTAACTCCTGCAGAATTTGTAGAAATAAAAGCTAAGCTTTTGAGTATAATTGACACTGAGTCAGACAGTATTCGTTTTTATTTGCTAGGAAAAAATTGGCAAAATCGTTTAGAAACAATTGGACGAGATACAAGTTATGACCCTGATATAGGCGTACTACTCCTTTAAATTACTTAGTGCGAATAGTGGTTACTCATAAAAAAGTAGGGCATTCGCTCGAAAAACAAACAAAAATAAGGTGAAAATTCAAAAATAATGGAGGAGTTATCTCTCCTTGAGAAATAATTTTCACCTAAAACAGTGCAACTACGCGCT # Right flank : TCAATGATTGATTGTGTAACTCGTCTATGCTATAATGTCGCTTCCTTCATTTTGACAGTTTTTATGAACCCAAGATACATATTTATTATTTATATAATATATTTAGTTATGCTACTTTATATCTATCCAAAAAACAACCACCTATTTAGGTGGTTGTTTTCATTTATCACTGCTTACTAGAAGAAGAACTTGAGCTGCTTGAGCTGTCGCTGCTGGATTCAGAACTGTCTTCTGAGGAGCTGGTGCTTTCAAATTGTTCTGGGTGAAGCGCTCGATAGCTTGGAGCATCAAAGAGATCAATAGTCGATTCGCCCTTGCGTTGGCTATAGAGACTGGTTGATTGGTCTCCTTTTTCTTCCTCGATTTTCTTCAATGCTTTGAAAGAGTGGTTGTAGGAGTATTTCTTGACATCTACCTTGCCCAAGTCATTACCCTTGTAGAAGCGAATCAAGTCACCGGTTTGAATAGCGTCACTAATCTTCAGCTGAGTATTGGCAGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //