Array 1 243463-244588 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURG01000096.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002072 CFSAN002072_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 243463 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 243524 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 243585 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 243646 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 243707 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 243768 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 243829 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 243890 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 243951 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 244012 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 244073 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 244134 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 244195 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 244256 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 244317 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 244378 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 244439 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 244500 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 244561 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 107707-106043 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURG01000081.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002072 CFSAN002072_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107706 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 107645 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 107584 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 107523 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 107456 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 107395 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 107334 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 107273 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 107212 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107151 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107090 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107029 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 106968 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 106907 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 106846 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 106785 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106724 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106663 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106602 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106499 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106438 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106377 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106316 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106255 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106194 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106133 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106072 29 96.6 0 A............................ | A [106045] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //