Array 1 56881-57459 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAE01000012.1 Acrocarpospora macrocephala strain NBRC 16266 sequence012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 56881 30 96.7 31 .............................A CGTCCGCACTCCCCATGTGCCCGGTGCGACG 56942 30 96.7 31 .............................A CCAAAGCGTTCCAGGCGATGGAAGGCGGCCT 57003 30 100.0 31 .............................. GGGTGTTGACGACGAGCTCGGCCGCCTCGGG 57064 30 100.0 31 .............................. TCTCGATCAGGTCTGCCTTGGTCATCCCGTT 57125 30 100.0 31 .............................. CTGCGGCCTTGCTCTCCGGCCTGACGAGCAC 57186 30 96.7 31 .............................C ACTCCCTGGAGGGGGCTCAGGACCTAGCGGC 57247 30 100.0 31 .............................. TGTCCGCGAAGCTCTGGTTGATCTCGGCCGA 57308 30 100.0 31 .............................. GTCACACGGCAACCGCCCTGCCGACTTCGGT 57369 30 93.3 31 ...T.........................G CCCCGGCCTGGCCCAAGCGTTCGTGCTTGAG 57430 30 96.7 0 ..............T............... | ========== ====== ====== ====== ============================== =============================== ================== 10 30 98.0 31 ATGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : CCGCCCGCTCGCTCCGCGCCGAACTGCACCACATGTGGCAGGAGACCGGCAAGACCGTCGTCTTCGTAACCCACGACGTCAGCGAGGCGGTCGAACTCTCCAACCGCATCCTGGTCTTCGCCAAGGGCGGCCGCCTCGCCGAGGACATCCCCATGGACCTGCCCTTCCCCCGCGAGTCGGCCGACCCCGACGTGGCGCTGGCCAAGGCGGAGGTGTTCCGCACCTTCGAACGCATCGGCGCGCTGACCGTCCGCTGACCAGACGACCGTTCCTGACAAGCAGGGCCCCACATTCACTCCGCCCTCACCTGCGGTTACCACCGGCTGCCTAGTCATCGACGGCCGACTGGCACCTGCGTTTCGACGCCCGCACCGTCGCCTGCGGCCATCTGCACAACAATGGGTTCGTCATGAACCAGCGAGAGCCCGCCCGAAATGCCCGATCCTTCAAAAGTACTCAAAATCACTGCCCGCAGCCGAGAACAACGCAGGTCAGACAGT # Right flank : TTGCTCAATGGACGAACCACGCTCAACGAGGGAGCCGATCGCAGCCAGCCCGTACTGGAGACCGGACGCATGGTGTTGCGAGCCGTTCCCATGGGCCAACGAAACAACTTTGCTGTCAGAGAACTGAGCGAAGTTCTCGCCTCAACCCGCCAAAGCTGTGAGTCCAGTAAACCCAGGAATCCAAGTCACCGCAGACTGCTCGATGCCGCCGTCGACGGGCAGGAAAACGACATCACGTAGGGCACGGTCGTTCCTCACACGGCACGGTTGGTCAGGGTGCCGATTCCGTCGATGGACACCTCGATGAGGTCGCCGGGGGCGAGCAAGCGCGGTGGGTCGAAGCCGATGCCGACGCCGGAGGGGGTGCCGGTGGCGATCACGTCGCCTGGTTCGAGGGTCACCGCTGCGGAGATCGCCTCGATAAGGGTAGGGATGGGGAAGATGAGGTCGGCGAGCGGGGCTGCCTGGCGCGGTTCGCCGTTGACCGAGGTGCGCACCCA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 149428-148056 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAE01000017.1 Acrocarpospora macrocephala strain NBRC 16266 sequence017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================================================================================== ================== 149427 29 65.5 30 TC..A...TA...T.A..........CTT TGGGCACCGTCTTTGAGACCAGTATTAGGT 149368 29 82.8 155 ........T......AG.....G.....G GGCGCACTCGCCCCGTGGGGCCGCTGTATCGTTCAATCCAGCTCTACCACGAAGACCGTTTCTGAAGGGCAGCATAGTTGGCAAGCGAGCACCCACCCGCTAGGCAACTAAAGAATTCCAAGACCTTCCGCCGCTAAGTTCCCAGGTCAGCAAGT CT [149354] 149182 29 100.0 32 ............................. TTCTCCTGGGAGGCAGCTCCGGCCAAATACGC 149121 29 96.6 32 ............................G AGGACGCGTTCGATGGCGGTGGGGTAGCAGAC 149060 29 100.0 32 ............................. TTCTTCCGTCATGGCCGCGATAAGCCGCCCGC 148999 29 100.0 32 ............................. TCTCGACAGCCATGGACGCTGTGTTCGCCGGC 148938 29 96.6 32 ............................A CCTGACGATGTCGTTCGACGCGCCACGAAGGG 148877 29 100.0 32 ............................. CGTTACTTCATGACCATGGACTCGACCTATCC 148816 29 100.0 32 ............................. TGCTTCAGCTCCATGCCCATGATCTGCGCGGC 148755 29 96.6 32 ............................T GCGGGAGTCTCCCGGGTCTCCGGGGGTACTGC 148694 29 96.6 32 ........................A.... GACGCGTCGGAGCTGCTGGCGTTCCTCGCGCC 148633 29 100.0 32 ............................. CCCGGCATCGAGGTGCCCGAAGAAGCCACCAA 148572 29 96.6 32 ............................T TTGGGGTATCACCCAAGACGGCACGTCGCGCG 148511 29 96.6 32 ............................T CCCTACGGTCACCAGGGGGGCTGATCATTCCG 148450 29 100.0 32 ............................. GCGACATCGACGACCTCCGCAAAGAAGTCGAC 148389 29 96.6 32 ............................T GCAGGGCCCCGACCCGACATCGGAGCCCCGCG 148328 29 96.6 32 ............................T GCGCCGGGGACGATGATCCGCCGCTGGCAGGT 148267 29 100.0 32 ............................. TGGACCGGCTCGTAAAGCCAGTGCGGGAGCCG 148206 29 96.6 32 ............................G CGGTGCCAGGCCAGGAACCCCACCCCGGCGGC 148145 29 96.6 32 ............................T CCGGCACCACCGGCGATGCCCGCGATTTCCGC 148084 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =========================================================================================================================================================== ================== 21 29 95.9 38 GTCGGCCCCGCGCATGCGGGGATGGTTCC # Left flank : CCGTACGGCCCCGAGCCGCCGTCCCACATGTGCCAGCAGGTAGCCGCCGACCTGCTCAGATCCGGCTGCCCCACCCGCCGCGTGGACCGCCTCTCCAGCCTCTACGCCCAGCGCCGCACCCTGCTCCACCAGTCCCTCGGCGCCTACCCCGACACCAGCCTCCTCGGCTCCGACACCGGCTCCGCCGCCACCCTCCTCCTCCCTCCCGCCCTCCCCGCCACCCGCCTGACCCACACCCTCCGCGACCGCGGCGTAATCGTCACCACCCTCGCCGACTACTACCACCCCCACAGCCACCCCAAAAACGGCATCGTCCTCGGCTACGGCCACCTCGACGAAATGACCCTCCGCCGCGCCCTCCGCACCCTCACCACCACCCTCGACAACCAGGGCCTCACCCGCCGCACGGCGGGCCGCACCAGAACAGTGGCCTGACAGAGGTGGCCGTCAGGGCCGAGGTAGTCGATGTCGCGGGTGTAGAGCCAGCCGTCCTGGAGGCA # Right flank : CCGGATCACCCGGCAGATCGCGTCCCTTGTCGGCGCCAGGAATGATCCCATTCTTTCGAGCCGGGGAACAATCTCACAAAGGCATCGGTCCAAGGTCTGCCAGGAGGGTGGTTCGGGACCGGGCAACCACGAATCATGGGCTGAGGAGCGGGAGAAGGGCTGCCAAGGCGCGCATGTCGGGCTTGCCAGCGGGGGTGGTGGGGACGGATGTGAGGACGGTGATCGTCTTGGGGGTGTGCGCTTTGCTCAGGGATGACTGGATGAGGGACTGGAGGACCGCGTTGTCTATTTGGTGGCCGGGGGTGGGGACGACGAAAGCGTGGATGGCGTCGCCGGTGGTGGGGTCGGGGGTGCTGGTGACGTAGGCGGCGGAGACGGAGGGGTGGGTGGTGAGGACGCGTTCGATGGCGGTGGGGTAGCAGACTTCGGCGTTGACGAGGATGACGTCGCGGCTGCGGCCGGTCAGGCGGAGGAGGCCGTCGGGGCCGACGTAGCCGATG # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.55, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCATGCGGGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 71068-71460 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAE01000043.1 Acrocarpospora macrocephala strain NBRC 16266 sequence043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 71068 30 80.0 28 CG.AA....A...................T ACCATGAGTAACGAAGTGCGGGCATGCC 71126 30 100.0 31 .............................. CCGAGCCGCCGGGGGAATTCACCCTCACCGT 71187 30 93.3 31 ....G........................G TGACCGCGATCAACCCACAGGCTGAACCGTC 71248 30 96.7 31 .........A.................... CACCAGGGCTGGTGGGGATCTGGACGTGATT 71309 30 93.3 31 ....G........................C TTCGCGTGGCCATGAACGGCGGCGTCGTGAC 71370 30 96.7 31 .............................T CCGAAGCCACCAGCGCATCGGCCGCCACCTT 71431 30 93.3 0 ..............GT.............. | ========== ====== ====== ====== ============================== =============================== ================== 7 30 93.3 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : AGAACTGATCCAGCAGTTCGACGGCACTGAGGAGGACCAGCAGCGTCAGGCGCAACAATGGGCGGAGTCAAACCACGCTTTCCATTCCGTCATTGTTGAAGCCTCCGGAAATCACCAGCTTGAGCTGACCATCGCCGAGCTCAGGCGACGCCTTCCGCACAATCTGTCTTACGCCGCGTACGCCGGCAACGCGCGCCTGCTGCGCCGCAATCTCGAGCAACACGAAGGCATCGCCGCCGCGATCATCGGCCACAACGCGCGCCTTGCGCGAAAGCTGATGACAGCACACCTCCGAGCATCCAATGAAGCCACCGCGCGGTGGGTGGAGAACAGAGGGTCCCGCGTCTGAGAGCGATCCCTTGCCACGTACTTGATGCTCAGCCAGCGCGCGCACAGCCCCACCTACTGAGCATGCTCCTTTTCCAGCGATGGGTGCGGTGGCGTGGGGGTTGCGTCCACGGGGGTGGTGTACGAGTTTCCACTGGTCGTAGGCGTGACGT # Right flank : AGCGCAGCAAATGCCTGGATGAGGTCCGATGCGTCCCGCCGCGCACGCGGGGCTGGTCGGCCGTCGTCCCCTGCTCGTACCAGCCGGTCAGTTGCGGAGATCTAGAACGGTTGACGGCAGCCGGACCGGGGGCTTATCGGTATGGCTTCGGCGTTCGGTCCAAGGTTTCCACAACGTCCATAGCGGGCGTAACCGCCAACGCCCGGAGAAGTTGCCCTGCACCTGCTGCCGCGTCGCCAAGATGCCCTTCAGTCAAGGACGGCTCCAACCCGCGTTCACGGAGAAGTACGGCTACTTCCTCGATTAGATGATATGGGTTGTAGTACTGGCGTTCATCGCTCATGAGGTTTCTCCTCTACCAGGTTTTGCCCGTAATACGCTCGTAAGCGTCGATATAGCGGGCTCGGGTCGCGTCCACGATCCTTTGGGGAACTTCCGGTGCAGGCGCTTTCTTGTTCCATCCAGTTCCGGCAGCCCAGTCACGAACAAACTGCTTGTCG # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : GTGCGCCCCGCGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 75881-77738 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAE01000043.1 Acrocarpospora macrocephala strain NBRC 16266 sequence043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 75881 30 100.0 31 .............................. AAGAAGATCGGCCCGCTACCGGTCGGCGTGT 75942 30 96.7 31 .............................T GGCCGAGCTGATCGCCACGGAGCCCCCGACG 76003 30 96.7 31 ............................A. GCCCGGCTGCGGGCCCGGTTGGCGAACGCGG 76064 30 93.3 31 ............................GG TCGATTGGGTGGATGAGGACGCTCACGGCGC 76125 30 100.0 31 .............................. GGCAGCCGGCGTACCTGGTTTCGATTGCGGC 76186 30 100.0 31 .............................. ACACGAACGGGCGCCGGTTCACGTAGGCGGC 76247 30 96.7 31 .............................G GGCGTGGCGGGTGGTGTTTCACGTCGGCCCG 76308 30 93.3 31 ............................GA CGTGGATGATCGGAGACGGGATTCCTGAGGT 76369 30 96.7 31 .............................G GATGCTCGACTGGATGACCGGCGAAAACCTC 76430 30 96.7 31 .............................G CCCCGCTCGCCGCGCTCCGACCGCTCATGGA 76491 30 93.3 31 ............................TT CTGAGCGGGGGCAGGTCATCGGGGTCCTGCT 76552 30 96.7 31 .............................T GTCACCAGCTTGTCACTACACGCCAGGCCAC 76613 30 93.3 30 ............................AT GAGGCGGTGATCGGGCGCACCGGACGGGGC 76673 30 100.0 31 .............................. ATCCGCCATCACCACGTCGTCTCCCTTGTAC 76734 30 96.7 31 .............................A CCGGCTCGTCGAACGGACCGGCCGTCATCCG 76795 30 96.7 31 .............................A GAGCGCGGCGTGTCGTAAAGCCTATGGAGGC 76856 30 96.7 31 .............................T TGGCCAAGTCCATCGGCTCCTTGCCGATGAT 76917 30 100.0 32 .............................. ATCCCGACGGGGGCACCTAGCATGCCGCTCGC 76979 30 96.7 31 .............................T GGACGCGGCCCTGGATTCCCTCGAATTTACG 77040 30 96.7 31 .............................T CATCCACGCCATTGCGGTCACCTCAGGCGGG 77101 30 96.7 31 .............................A GGCCAACAACGCCCTGCTGTACCCGGGGTTG 77162 30 96.7 31 .............................A GCTCGCGGCCGTGGTGGGACCAAATGTTGTG 77223 30 96.7 31 .............................G ATCCCGCGCCTCCTGCGAGCAGCGCGATCAC 77284 30 93.3 31 A............................G ACCAGCTGAAGGCGAAGAACGCCGCGCTCAA 77345 30 100.0 31 .............................. TCTTTGGCCGAATTGTGAGCCGACTCACTTC 77406 30 93.3 29 ............................TG GTGGCGATCGTGTGCGAGTCCGGGGACTG 77465 30 93.3 31 .............C...............A GCCATGAGGCAGGGTGCGCACGTGAAAGCAG 77526 30 100.0 31 .............................. CGGACTCCTCGATCCACCAATTGACTGGGCC 77587 30 96.7 31 .............................G ACCACGAACACGACGTCGCCGCAGGCGCATT 77648 30 96.7 31 .............................T TCACACCGCGCCTGACCAGCTCTTTCTCGAT 77709 30 96.7 0 ............................A. | ========== ====== ====== ====== ============================== ================================ ================== 31 30 96.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : GAACAGCACTGCCTTCACCTGCGCCGCCGCGCTAAGGCCGACTGGCCTCGATCGTCCTGCCCAGAAATGGTGTCCGACCCTCGCTGTCCAGACGTTGCCTCGTATCCTCGATACGCCCCGCGCCGAGGAGCCACGCCCGAAACACCCTGCAAGCACGCGCGGTGCCCAGCCACCTCAGGCGATACCCCCTACGACCCTCGGCCGCGACGGCCACGACGTCATCCGGTTGGTCACCAGCGAGTCCAGGCGCCTTCCTCGGGTCGACACCACCCTGAACCCAGGACCGCCAAGCCTGATCTGAACCACCTGGAACCGACCAACCGCTCCCAACATGCGGCAACGCCGGCGCACGCTGGGCCAGCGACCATCGATATCCTCTGAGCCTGGGACCCGGCAACCAAGATCAGTTCCACCAATGACCAATGATGTGCGAGATGTCCGATTCTTTGGAAGTGCTCAAAATGCGCCATCTTGACGATTAACCGTGCAGGTCAGCGAGT # Right flank : CTGTTGAGAGCGGTCATCAGGAAACCCAGACTCACGGTCGCGTGGGTCCTGCCAGGCGGACACCAGATTCCGGGCCAGCGGTCAACTCTGATGGCCGCCCGCCTGGAGGGACAAAGCCCCGGCGCCGTGGTGATGAGGGCCGTGACGATCGCTTGCGGTGGTTGAGCACCGGTGATGGCTGGGGCGATCGGCGCCGTGTGCCTCCTTCGTCGGCCCACGCCATCGTCGTCGTGGGCTCTCATCTCACGGTAGAGAGAGGCCACGTGCCGGGATGTGAGATGGCCGTCAGCCGTCATGTCACGTGACCATGCACCCAGACCCCGCCGTCCGTGGATCAGGAGAAACTGATGACCGCTAGCACACTGTGTTCGCATCCTTTGAGCGCGCACGCTGTTGTGCTCCCCGCGCACGCGGGGATGGTCCCTGGCCGAAAGCTTTCGCCGTCTTCTCGTACTTGTGCTCCCCGCGCACGCGGGGATGGTCCCCGCGCAGCCGCCAGC # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 78133-78466 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAE01000043.1 Acrocarpospora macrocephala strain NBRC 16266 sequence043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 78133 30 100.0 31 .............................. GGCCGAAAGCTTTCGCCGTCTTCTCGTACTT 78194 30 96.7 31 .............................C GCGCAGCCGCCAGCACGAGACGGTGGACATG 78255 30 96.7 31 .............................G TCATGGGCGCGAAGCGGATCGACGAGCAGCT 78316 30 100.0 31 .............................. TTGGGGAACATCCAACATGCCATTAGAGGTA C [78321] 78378 30 96.7 31 .............................G CATGCGCGTTGGCGCACGTCATCCAGGCGCA 78439 28 83.3 0 ........--...........G......GC | ========== ====== ====== ====== ============================== =============================== ================== 6 30 95.6 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : CGCCGCAGGCGCATTGTGCTCCCCGCGCACGCGGGGATGGTCCCTTCACACCGCGCCTGACCAGCTCTTTCTCGATGTGCTCCCCGCGCACGCGGGGATGGTCCACTGTTGAGAGCGGTCATCAGGAAACCCAGACTCACGGTCGCGTGGGTCCTGCCAGGCGGACACCAGATTCCGGGCCAGCGGTCAACTCTGATGGCCGCCCGCCTGGAGGGACAAAGCCCCGGCGCCGTGGTGATGAGGGCCGTGACGATCGCTTGCGGTGGTTGAGCACCGGTGATGGCTGGGGCGATCGGCGCCGTGTGCCTCCTTCGTCGGCCCACGCCATCGTCGTCGTGGGCTCTCATCTCACGGTAGAGAGAGGCCACGTGCCGGGATGTGAGATGGCCGTCAGCCGTCATGTCACGTGACCATGCACCCAGACCCCGCCGTCCGTGGATCAGGAGAAACTGATGACCGCTAGCACACTGTGTTCGCATCCTTTGAGCGCGCACGCTGTT # Right flank : CCCGGAGGAGGCTGCCGCTCTGGCGCACGTGCGTGCTCCCCGCTCACATGGGGGTCCCTTTCCCCGTTTCGCCCAGAATCGCCGGGGCGGTGCGACGACAGCGCCGCAAACCGCTTCAACCGCACAGGATGTGATAAGCCCGCTGTTCGGCCACTGGCCTCTCTTATCCAACAGAGCGCACCTCTTGATGGATCAAATCCCACCCCTCAGCTAGGTTGATGGGTAGGATTTGATACACGGAGGCAGAGGAGGATCGGACGTTCGAAGTACGGCTGGCGGCCTTGCCGCCCACGTTTACCGCTGCCCAAGCGCGTCGTGCCGGGGTCTCATCCCATGGCCTTGCCCTGCTGGTAGTGGGTGGAAAGCTCGATGAACTGTCGCGAGGGGTCTACCGCCAAGCGGACGCTCCCGAAACCGCTCACCTTGATCTGCTTGCCGTGTGCGCGCGGGCGCCCCGCGCGATCATCTGTGGGGAGTCGGCCCTGGTACTCCATGAGCTC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 80707-80980 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAE01000043.1 Acrocarpospora macrocephala strain NBRC 16266 sequence043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 80707 30 100.0 31 .............................. GTCGAGCGCCACACGCCCGGCCGCCAAGGCC 80768 30 100.0 31 .............................. CGGGTGACAGGTTCTCCGGCTTAGCCCATGC 80829 30 93.3 31 ............................AC CGCGTCGGCGGTGTAGATCCCGGTGCCAGCC 80890 30 93.3 31 ............................TC TGGGCGACAAGTACGCGACCCGCTGGCCTTC 80951 30 86.7 0 ....C..TT............G........ | ========== ====== ====== ====== ============================== =============================== ================== 5 30 94.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : TGGAACTGAGCCTGGACCCACACCCGCATCGCATCCGAGCGATCTCTGGCCCCCACACACGTAGAGATGGTCCCTGCGCAGTCGAACAGATCAGGGCCCACTGGGTTTCCGTGGCTCGGTAGTCAAGACCTCGTTCAGTTCACCTACGGCCGGATGGTCACGGTGGTCCATGGGGACGGCTCGCAGCACCATACGTCCGGTCTCTATCACATGGTTACTGCGATGGGCCGCCGGAAGGTTGGCGATCAATGCCGCAGCCTGCTGTGCACCTTCACGGATCCCACCTTTAACGACCGTGCACATGGCCCCGTGCAGGGCCACGCCTCCAACATGCGTGCAGCACCGGTGCACGTTAGGCCAGCGCCATCGATATTCTCCGAGCCTGGGGTTCCGGCAGCCAAGGCATGTTCCACCGATGACCAAGAATGTGCGAAATGCCCGCTTCTTTGGAAGTACTCAAAATGCGTCACCTCAATGGCTAACTGTGCAGGTCAGCGAGT # Right flank : GACGACAGCTGTCAGTGCTTGAGGCGCTTGACGCTGGTAACAAATCGAGCGATCTTCCCCTGGTCTGGTGTCAGCCACTCGGCGACGTCAGTGATGACGGCCGCATCGACGTGCTGGGGCGCCTCGTAGTCCGCGGGCGTGGACGGGCCTGTGCCGGAGAAGAACATGTGGTCGTCGGCGTCGTAGACGCGGATGGTGACATCCGGCCGGTGGGCTAGGCCAGCCTGCCACCGCGACAGATCGTCTTCGACGGTCACCTGGTAGTCGCGGCCGCCCTGAAGGATGAGCATCGGCTTGTCCAACGCGGCTGCGGTCGCCACGGGGTCGTAGCCGCGCAGGTCCAGCCAGTACGCTCCCGAATAGCCGAATGGCAGGTCCGCGGTGGGAGTGGCGGCCGACAAGTGGGGGCTGTCGACGAGTGCGGCCTGTCGCGTGATCGCCTCGACGGCGGACTGGGCGGCCGGGCCGGGATTGACCGTGGCGAGATGGCGGACGACGCG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 84955-85716 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAE01000043.1 Acrocarpospora macrocephala strain NBRC 16266 sequence043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 84955 30 96.7 31 .............................A GGCCGACTACCTTGAACTGCATCGCGTCCTG 85016 30 100.0 31 .............................. CAAGACGATCAAAGGCCAGAAGGAACAGCCC 85077 30 96.7 31 .............................T TGGCGAGCGTCCCCCGAGAGCACCCAATCTT 85138 30 96.7 31 .............................G AGCCGGACTCCTACGACCACGTACGTGACCT 85199 30 100.0 31 .............................. CACAGGATCTCATCGGCTCGGCATCCTGCCT 85260 30 96.7 31 .............................G GCCGCCAGCTCGGGCAGAAATGCCCACGGCT 85321 30 96.7 31 ............................G. GGGTCCCCTGGCTGGAGCGCGGGAGGCTGGC 85382 30 96.7 31 ............................G. AGGTGTAGTCGCCACCAGCGATCCCGATCAG 85443 30 96.7 31 .............................A CGGCGGGCCTGCGGGAAGAGGTCGGCGTCCT 85504 30 100.0 31 .............................. TGTCCGCGTGCACGGACTCGCGGTGCACGCA 85565 30 100.0 31 .............................. TGTGGCTGAATCCCGCCCACGGGCCAAAGCT 85626 30 93.3 31 ............................TT GCATCAGCCTGTCGGGGTCCTTTTCGCGAGA 85687 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== =============================== ================== 13 30 97.5 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : AACAACAGGCTCACCGCCCGCTCACCCCGCCCAAGCGCGGTACCGCTCCTGGAACTGGTGGAGGCACACCTTCCCCGTCCCAGCAGGCCAATGGATCGGCGGGGCGTCGATCGCCGTGCGGCGTCAAGAGATCATCGATCGATAGGAGGCGACGCCCGAACACGGCGATCGCCCTGCAAGCACGCGCGGTGCCCAGCCACCTCAGGCGATCACCCCTTACGATCCTCGCCGGCGACGGCCATGACATCATCCGGATGGTCGCCAGCGAGTCCAGGCACCTTCCTCTGGTTGGCACCACCGCGAACCCAGGACCGCTTCGACCAAGCCTTAACACCGGCGCACGCTAGGCCAGCGACCATCGATATCCTCTGAGCCCTGGGACCCGGGCAGCCAAGATAGGTTCCACCAATGACCAATGACCAATGATGTCCGAAATGTTCGATTCCTTAGAAGTGCTCAAAAAGCACCATCTTGACGGTTAACCATGCAGGTCAGCGAGT # Right flank : TCGTCGGACGGTTCATGGAAGAACTATGGTGATGAGCACCATACGCTGTGGACATATCGGACATTACGAATTAACAGTCCACCCGAAGGGATAATTTGCCCGCTTCGTCTCGATTCGATAATGATGTTGGAGTTGTCGCAAACATAGCGAGGTGGAAGGTCTTAGATAGCTCTTTGTGATCGACGACACGGTCCGCGGTCGGTTCGCTGATGGAATTTCGGCTTCCGCGCGTACGGTCTGGGCCAAGCACGATCGAGATGCCGATGGGTGGCTGCCGTTATGGCGGCACCTTGCTGACAGTGGTGCTGTGGCGGGGCAACTCTGGGATCATTGGGTTCCCCTTCAAGTGCGGCGAATGATTGCCGATGTTCTTCCTGGCGGGAATGGCGATGCGCGTCGGCTCGTAGTCTGGTTGGCGATGACGCATGATATTGGGAAGGCTACGCCGGCCTTCGCGTGCCAGGTGGAATCACTTGCCGAAGGGATGCGGGCAGTTGGTC # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 95542-96120 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAE01000043.1 Acrocarpospora macrocephala strain NBRC 16266 sequence043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 95542 30 96.7 31 .............................T CCATCTGGCGCACGTCGGTGTTGCCGGTCCA 95603 30 96.7 31 .............................C TTGAACGCGGCCCGTGCGACCCTGCTGATAC 95664 30 100.0 31 .............................. ACGCCTACGACGCGCCCGGCAGGAGGGCGAC 95725 30 96.7 31 .............................A GGGACGCCGGGACCGGACTCAACACCGGCTC 95786 30 100.0 31 .............................. AGCTGATAGCCCTCTGGCGCGGGCATGCCCT 95847 30 96.7 31 .............................C GCGATAGACGGGGAGAGCTGCACGTGTCCGC 95908 30 100.0 31 .............................. GCTTCCCGGTGGACCTGCGCGGCCGGGTCAA 95969 30 96.7 31 .............................T GGGTCTGCCACTCCGCAGCCGGGTGCTGGCC 96030 30 100.0 31 .............................. TCGCCCCGCCCGTAACCGACAGGGTCAGCTG 96091 30 90.0 0 ......T......T...............T | ========== ====== ====== ====== ============================== =============================== ================== 10 30 97.3 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : ATCGTGCTGACCCGCTGCCCAGCAGGACTTCGTGGCTTCCTGACGCGCTGGCTGATGGAAATCTCCCCAGGCGTCTTCATCGGAGGACCCTCAGCACGAATTCGAGAAGCACTATGGATGGAAGTCCAGCGATACGCGGACACCGGACGAGCCCTACTCGCCTATAGCACCGACAATGAACAAGGCTTCACCTTCGAGACATACGACCACAAGTGGCACCCGATCGACCACGAAGGCCTCATCCTGATCCGCCGCCCCAAACCCAAGCCAGCGTTATCCCCAGCTCCCGCCCCCAGCGGCTGGAGCAAGGCTTCCCAACGCCGCCGCTACGGACAACGCTGATGTAACTCACTGATCCACAGAGCTCACCAGCTCGTCAGTCCCACTGCGCCTCTGGTAAGGCGTATCTTGTGCCATTGCAATACGTGTCCATATTGTCCGAATTCGCGAAAGTGCTCAAAACGAGCACTCTCGACCAGCATCCGCACAGGTCAGCGAGT # Right flank : TGCTGGTATAGCCCTGCTGCATGAGCTGGAAGTCGTGTTCGGCCACGGTGAACACCCAGTCCTTGTCCCACTGGGCTGCTGTGGCTTGCCCTGCCGTGACCAGGTTGGTCTGGAATCGCCGGGCTAGCAGCCCCCCGCTCGGGATCTGGCCGCCCGCCGGAAGGCCACCGGCCCGGATCCGCGTGGTCGGCTCATCGGCGATCACCAGATACGCCGGCATCACAGCAAGGGCTGGTGTGGTGCCCTCCGGCCCGACGAACGTGCCAGCCCTCGCCACCGTGTGCGCCAACTCTCACATCCGCAACGCCTCATGCACCTTCCGCGCGGTCGTCAACGAGACGCGGAGCCAACCCTCTGCCGACCCGATCCCCGGCAACCAGGTCCTCTGACGGATCTACTCTCGATGTCGTTGGCGTTCCGCACGTACAGCGGGTCTTCATCCCCCTCGGCCGGGCCGCACGGCGGGCGTCCCGGACCTCTGCCGGTTTCCCTCACCCAGT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36536-36723 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAE01000007.1 Acrocarpospora macrocephala strain NBRC 16266 sequence007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ================================== ================== 36536 41 97.6 34 ......................................A.. ACCTCACCGCTCAGGGCCTGCCCCGCAAGAAGGC 36611 41 100.0 31 ......................................... ATATTTGCCAAAAGCGCGGCCTGGACCCGTG 36683 41 97.6 0 .....................................A... | ========== ====== ====== ====== ========================================= ================================== ================== 3 41 98.4 33 GCTTCACCCCGGCTTCCGAGTCGGGCTCCATTGCGGCGTCC # Left flank : ACACCCTTCGTGCCCTCTCGCCATCACAAACCCCGGCAAACCCTCGCCGAATACCTCCACGATGAGGTCGTCCGTGAACTGAGCTACCGAGGAAACGACGTTCCCGAGGTCAGGGCCGAAGAGCAATTCGACCCCCGATTCGTCGGCTTCATCCGCCGCCGCTGGCGCGACAGAAGACCCGCCGCCACGCTTCCCAGCTACGCCCTTGAACTGCAGTTCGCCCAACCAGTCCAAGGGCCCATCACGCTGGGACACCTGTCCCACTTCGGGCTTGGGCTCTTCCACCCGGTCGGCTGACCGCCGTGACGATTCTTGATAATTGAACAGCGTGAACCTCAACTCGCTGCACTATCTGCGACCGCTGCGCTTGGTTCGGAACCTCTAGTGCACACCCGTGCCCTGGGAGGTTCCCAAGCACGGAAAAGAAATCCCGGGAACAAAACGGACAAGGTATTCGCATTGAAGCGAACGCTGAGCGTTATCAGACCAGTTCGCGAACC # Right flank : CTGAGAGCGGTCATCAGGAAACCCAGACTCACGGCCGCGTGGGTCCTGCCAGGCGGACACCAGATTCCGGGCCAGCGTTCAACTCTGATGGCCGCCCACCTGGAGGGACAAAACCCCGGCGCCGTGCTGATGAGGGCCGTGACGATCGCTTGCGGTGGTTGAGCACCGGTGATGGCTGGGGCGATCGGCGCCGTGTGCCTCCTTCGTCGGCCCACGCCATCGTCGTCGTGGGCCCTCATCTCACGGTAGAGAGAGGCCACGTACCGGGATGTGAGATGGCCGTCAGCCGTCATGTCACGTGACCATGCACCCAGACCCCGCCGTCCGTGGATCAGGAGAAACTGATGACCGCTAGCAGCATCCAGCAGGACGGCGACTACGACCAGACCCCCGCCAGCTTCACCCCGGCTTCCGGGTCGGGCTCCATTGCGGCAAGTACACGCGAGAGGATGACCCGCCGTTGCGGCTGGGCTTCGCCACGGCCTGCGGGCCGGGCTCCA # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCACCCCGGCTTCCGAGTCGGGCTCCATTGCGGCGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 236625-235254 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAE01000007.1 Acrocarpospora macrocephala strain NBRC 16266 sequence007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 236624 29 96.6 32 ........................G.... TCCGCCAGGCCCTCGGGGTGCTGCGTCACGAA 236563 29 96.6 32 ........................G.... GCGGCAACCGCGTCCCCAATGGAGGTGTAAGC 236502 29 96.6 32 ........................G.... CCCGAGTCGGTCAACAGGTCGTGGATGATGCG 236441 29 96.6 32 ........................G.... TTCCTGCACGCGGTGTCGGTCGCCTTCGATGT 236380 29 96.6 32 ........................G.... ACGCTCGCGCGGCGGCTCGCATCGGTGTCGTC 236319 29 96.6 32 ........................G.... CTGACGGGGATGTCGAGGGTGCCCAGGTCGAG 236258 29 100.0 32 ............................. CTACTACCAGTTCCGCTATTCAGCCGTCCTAC 236197 29 100.0 32 ............................. TGCTGCGGGTGCTGCGGCGCGTACTGGAGCGA 236136 29 96.6 32 ..............G.............. CGGGCATGGCGGCGCTGGGCCACCCGACAGCA 236075 29 100.0 32 ............................. AGTACAGATGCTCTTGTACGGCAAAGCACAGT 236014 29 96.6 32 ............................A ATACTCTTGCCACCCCCGGGCCTTCCGGCCGA 235953 29 100.0 32 ............................. GTCAGTGACGGGATGTTGAGCAGTTGGAGCGC 235892 29 100.0 32 ............................. TGCTCGACCGGCTCGTCCGCATCGAGACCAAA 235831 29 100.0 32 ............................. ACCGAAAAAGGTGCGTTCGTCATCGGACGGGA 235770 29 100.0 32 ............................. GCGGGCCTGATCATCCTCGGAATGCGCCGGGA 235709 29 100.0 32 ............................. CGTTCGGGACCTCAGCCTCCCGCCGCCAAGCG 235648 29 100.0 32 ............................. CGCCGGGCCAGGCTCTCGTTCTGCTTGCGGAG 235587 29 100.0 32 ............................. CGGCGCGCGAGGCCTTCGCCGCGAAGGTGCGC 235526 29 100.0 32 ............................. TAGGCTTCTTTGGTTGCTTTGGCCGGGGGTGC 235465 29 100.0 32 ............................. GGCTGTCCGCGTCGGTGGCACGGCGCGGAAGC 235404 29 96.6 32 ....C........................ GCGTTGAGGATGGCGGGGTGGTCGGCGACTTG 235343 29 100.0 32 ............................. GCGCAGAGCGTCCCCACCATGGCCGCGACATC 235282 29 86.2 0 .......................TCT.G. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.1 32 CTGCTCCCCACGCCCGTGGGGGTGAACCG # Left flank : AGTACGACAGCTGGCACCGGGTCTCATCCTCGCCAGACTTCAGTTCCGCCGCAATCGACGCCCGGAGCCCAGGCGAAAGATATTCATCCCACAAGGCTTCCGCAACTGCTGCAGTGTCCAGTAGATGGCAGACCAGCGGATAGGGCGACGGCAGCCCTCGCGACTTGCCCCACAGGGTCAGGTCGACATCCAATCCACTCATCCGAACCCCTTAATCCTGCGGCGTCACACCTAGCAGCGGGCGGTTGATCTCTCTCTCCGCCCAGGCGAAAGCTCACTGTAGAGTCAGCCACCGACAATCCGGGAGAGATTACAGAACATGAGACTTCTTCTTCTAAGAATGTAGTCATAAGGACATAAACCACCACAGTTCACACCTCGAGATCTGCGATGTTCTGTCGCATGCGCTATTGCGCCCGCTCAATGTCCTTTCTCGATCACCGACAATTCCCGACATCCATGTCGCCGCAGGTCAGGTCTATCCTTGCTGCTGAGGAAGT # Right flank : CGACGCGTCGAGCGGATCGGCTGACAGCATTCGAGTTTCTCCAGAGCATCGACCGCGCCCGCGCCGGACTCGGCTTCGAGCCCGGCACGGCTGGCGTACGCACATCCAGGACCCGACAGCCTGACGCCACCTCGCTGACCGATATCTCGGATCCAACTGGAACAAGTGGCGCTGGGTGTTGGATGTATGAATGGGTGTCCGGGTCGGTGTGTTGATCTGGGCCGGCGAATCATGGTCGTCGGCGGTTGAGGTCTGGCGTCGTGCGGAGGAATGGGGGTTCTCGCACGCGTGGGTGTACGACCATGTCGAATGGCGGGGGGTCCGGCCGTGGTTCGACGCGTACGCGGTTCTGGCCGCGGCCGCCGCGGTCACCTCAAGGATTGGTTTGGGGCCGTTGGTGACTACGCCCAACTTCCGGCATCCTGTCCCGGCCGCGCATGCGCTCAAGACCGTCCACGACATATCCGGTGGCCGGCTGACGGTGGGCCTCGGCGCGGGCA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACGCCCGTGGGGGTGAACCG # Alternate repeat : CTGCTCCCCACGCCCGTGGGGGTGGACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 246560-248600 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAE01000007.1 Acrocarpospora macrocephala strain NBRC 16266 sequence007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 246560 29 100.0 32 ............................. CACTGGAGAACGAACTCGCCGGCGCATCCGTC 246621 29 100.0 32 ............................. GACCCGCGGATCTGCCCAGACGAGGCGACCGC 246682 29 100.0 32 ............................. GCGTCCATGCGGTCCCGCTGTTCGTCGGTCAA 246743 29 100.0 32 ............................. GGCAACGCCCGCGCCTGGTACCGCCGCGCCGG 246804 29 100.0 32 ............................. TGGCCCGCGGCATCGAATCCGGCCCGGTCTCG 246865 29 100.0 32 ............................. TGGTACCTGCGCGTCGTGAAGCGGGCGAAGGG 246926 29 100.0 32 ............................. TCGAGCGCCTCATAGGAGCCGACCGTGAACCC 246987 29 100.0 32 ............................. CCCTAGCAACTTGCTAGACGGTTGGTACGACG 247048 29 100.0 32 ............................. TTCAGCGACCGTAAGAAGAGCGGCGCAAACGA 247109 29 100.0 32 ............................. CTGCTCACAGACGGGGAGTGGTCTGTGAACTC 247170 29 100.0 32 ............................. TATTTACATCGGCCGACGTCAGCATTTCAGTG 247231 29 100.0 32 ............................. CCGCCATCGCCCGTGTCCGCCGCCTGTGCGAG 247292 29 100.0 32 ............................. CACGCCTTCGCGAGCTGGCCGCGCGCGATGGT 247353 29 100.0 32 ............................. GACCTCTTCATCAAGGGCGGCCGGTCCGGTCG 247414 29 100.0 32 ............................. ATTCGGCCGGCCCGCGATGACGTCACTCCCGC 247475 29 100.0 31 ............................. TCGTTGGCGTCGACCGGGGTGTTGCCGTGTC 247535 29 100.0 32 ............................. TCATCAGCGTCCTCGATCACGCCCGCCTGGAG 247596 29 100.0 32 ............................. GCCCACGCCCACACCGTGTCCGGGGCGAGCAC 247657 29 100.0 32 ............................. AACGTGGTGGAGACGATCCACCGCGCCAACGA 247718 29 100.0 32 ............................. GTGCCGGCCATGATGTGGAGGACGACGCCGCG 247779 29 100.0 32 ............................. TCGTCAAAAGCCTGCCGAAATCCGGGGACGCC 247840 29 100.0 32 ............................. CGGGTCCACTTCATCAGCGAGCTGATGGTCTT 247901 29 100.0 32 ............................. TCGAGCGCCTCATAGGTGTCCACCGCGAAACC 247962 29 100.0 32 ............................. GTACCTGGAGCGGATGCAATGAGCCTGGACCT 248023 29 100.0 32 ............................. CGGACATGGATCTAGCCGCATAACGCAGAAAA 248084 29 100.0 32 ............................. AGGGCGCGGACTCCTGGGTGGACGTCAAGGGC 248145 29 100.0 32 ............................. TTCATGAAGATGATGGCGCCCTTCTTCGGGTC 248206 29 96.6 32 ............T................ GAATTGGGGGGCACCCCCGCCCTGCGGTTCAG 248267 29 100.0 32 ............................. TGGGCCCAGTCCAATCTGGACGACGCGTGGAA 248328 29 100.0 32 ............................. TTGTCCACGTACAGGTGGGTCAGCGTGGGTGG 248389 29 100.0 31 ............................. CCCGCCGTGGCCGCCGCTCAGACCTATTTCG 248449 29 89.7 32 ..CG.T....................... GCTCGCGAGGCGGCTCGCATGGTCCTGCCTCT 248510 29 96.6 32 ..............T.............. GAGTACACGGGGCGCGGGTTGAAGGACATCCG 248571 29 93.1 0 ............A..............G. | C [248597] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.3 32 CCGTTCCCCACGCCCGTGGGGGTGAGTCG # Left flank : ACATCCCGTGGTAGCCCCCGCCCAGCCAGGCCAGGCAGCTCCCATCGCCTGCTCCGCGACGGCAAAGAGCGGAGCCCGCCAAGGAGCCCCGCCGTGGCTTCGATGATCGTCATCTCGACCACCGCCGTACCCGACCACGTCCGCGGCGCCCTTAGCCGCTGGCTCATCGAACCCGCCCCCGGCCTGTACGTCGGCACCGTCTCCGCCCGCGTCCGAGATCAGCTCTGGGCCGCCGTCGCGGGCTGCGTCGCCGACGGCGCGGCCACCTGCGTCCACCCGGCCGACAACGAACAAGGTTTCACCATCCGCACCGCCGGGCAGCGCCGCCGCCAGATCAGCGATTTCGACGGCCTCCAACTGGTGCGCTTCCTCCCCGAACCTCCACCCGAGCCATGACATCCCGTGCCCTGCCGACCAGGGCCAGCACCTCTTGTGAATCACCGACAAACCCCGACAGTCCTATCCGCGCAGGTCAACCGAATTCCCCCAGCTCAGCAAGT # Right flank : GCTCAGCAGGCGTTCGGAGTCACAGAACAACCATCCTCCCCGTGGGGGTGAGCCGCGCTGTGACACGAGCTCATGAATGGTCGGCGATCCGCACGTAAAGCGGGTCTTCATCCTCCTGGCTCAGGTCGCGCGGCGGGCGTCCTGTCCCGGACCTCTGCCAGTTTCCTTCACCCAGTCCCGCTCGCCCGGTAGGGCTTTGTCTTTACCGGTCATCATCTATTCCCGCCCCAGCGGGACCTGTTTGGTTGAGGCGCGACACCATTGACTTCCATTGACGTCCGCTGGGCGGGTCGTTCAACGGCCGCGACGGTAGGTGAACGTGACGTCGATCTCCCGCGAGGGGTGGTCAGGCCTCCTGTCAGCCGGGCAAAGCCGCCAGCTCGGGCATACAGGAGGCCCTTCCACGTCTAAGGGCCGCAGGTGAGGCATGACACCATCGAAGCGTGCGTCAGCGGCGGGAACCGGGCGAGAGTGGCTGCATCGATCGCGATCCGCGGCCA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACGCCCGTGGGGGTGAGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 255053-255448 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAE01000007.1 Acrocarpospora macrocephala strain NBRC 16266 sequence007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 255053 29 96.6 33 ............................A GGAAGTCATGGACGCGCAGCAGGCCGAAGAACC 255115 29 100.0 32 ............................. GCCGGAGTGTCGGAGATCCCCCCAGGAATCGG 255176 29 100.0 32 ............................. GTGCGCGGGTAGGTGTGCGCGTCGAGTGTGCG 255237 29 100.0 32 ............................. GAGCCGCGCGGCGATGCCGTGGACCTGGTGGG 255298 29 100.0 32 ............................. GCGTCCGCCCGGCCGAGGGGGCGACCGCTCTG 255359 29 100.0 32 ............................. CTCGCGGCGCTGTGGAAGAAGCCGGGCGTGAG 255420 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.5 32 GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Left flank : CCCTCTTACGACGTAGGAGCCATATGAAAGGGAGAGTCCGACAGCTATGTGACGACTCCCCCGCCAATTTACGCCCTCAATAGGCAATCTGTTGAGACCTGAGCAACATTGACAACCTCAGGCGAACGATCACAGGAGCTATGTAGCTCATGCCTGAGATGGCTGTTATAGCGGGATGGTGACTTCCTCGGGCAGCCGTGGGGGCGTGCGCCTGATTCTGGACGGATGCGTTGTTCTTCCTCGACGCGATGACGATGGCCGCTCCTCGTCCCACGTCAAGATCGTTCGTCCTCGGCTTCGCCTGCGGGCACTCCATCTTGACCCGCTCCTCCGAGCTGCGGACCTGGCGCTTTTGTCAAGAAGAGAACAAAATGGTCAGTCGCCACGCAATCGACTTCGACGGCCTTCAATTGATCGTGTTCGCAGCCGCACAGAACAGCCGACCGAATCCAGAACTTCATAAACCTCATGTGAAATTGTGAACTAGCAGGTCAGTAAGT # Right flank : GCCGTTGAGGAGGATGATCGCTCTACCTGCTGTCGTCTGCGGGGCCGGACATCAGGCAATGCCGCCGGTGATGCCGATCAATTGGTGATGGCGGCCAGATCGGGGCTCCGGGTTGATCCGGTTAGACGTACCGTTGGGAGGCGGCGGCCGATCACGTGTCGAGCATTGTCTTGATTTGACGGCGGAGGGGGTGCCAAGCCTCGCCGAGGATCGTCGGCGCGGCAGCGAGCGCGTCAAGGGGATCGATGCCGTACACCCCCGGCGGTGTTAGAGCGGTCTCCAGCGCGCTGGCAGCCCAGAAGCGACAGGAGAGTGGGTGGTCGTCTGGGCGAAGCTCACCGTCGGCGTCGCGCCAGCCCTTAGCGAGTTCTGCCAGCAGCGGCACCAGATCGCTGCTGGCCTGCCCGCCGCGCTGCCCTGATGCCATCCGTTCGAGCGCTTTCCTGACGATGGGCTCGTCGTCCAAGCCGGTCGCTTTCATGAACTCGCTGATTGCCCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.70,-11.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //