Array 1 19514-19807 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDPI01000034.1 Bacillus altitudinis strain RIT380 contig34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 19514 32 100.0 33 ................................ ATCGTGCTTCCTCCTTTAGTGAATCCGTATCAA 19579 32 100.0 34 ................................ CTGTATGAGCGGTTGCGATACCTGATTTGAAGCT 19645 32 100.0 33 ................................ AGCAAACTATCGAAGTGTACAAGTGTTCCCATG 19710 32 87.5 34 ..GC....T..C.................... ATCTGCTTCCATACCAATCCACCGAGATACTAAC 19776 32 84.4 0 ...........C.......TA........GG. | ========== ====== ====== ====== ================================ ================================== ================== 5 32 94.4 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : ATTTGTGGATTTTTCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATGTGATCGGCACGAGACCCACGTGCATATGGGGTGGTCGCACTCTATATGAGTGTGAGGAATAAAATTCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGATATAGGTGTGAAAAACATAAATCTGTCTCAGCCATTTTATTAATGAATTCAAAGGTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGGGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATATATATTGTTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTTCCTAAAAAATGTTACAATTAGGGCGGAAATCACA # Right flank : TAGCTTGAAAGAAATGTTGACAGTAGCGCTTTATTTATGGGTGAAAAACATGACTCTGGCTCAGTAATCATGTTTTTAAATGAATTCAAAGATGTTGATGAAACAGTGAAATAAGTATGTTTTCAAGAGCAATAGTTTTTATTTAAATAGGATTAAGAAAAATTCGGTGCGAATGTGAGGTGGACACAAAATCCCTGGGACATTCGCACCTTCTCATTCGACAAAAATGAGAAAAAATGTATATTGTTTAGAGGTGAAAACAAAATTCTATATAGAAACTTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTACAATAAGGTCGGAAATCGCAGTCGCATTCTATATGAGTGCGAGGATTGAAATAAGCTTGCTGAAAGAACAGATGTTACTAATGCAGTCGCATTCTATATGAGTGCGAGGATTGAAATATGAATTTATCATCAAAGCTGCCAGACCTTACTGCTGTCGTACTCTACATGAGTGTGTGAATTGAAAT # Questionable array : NO Score: 8.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 20765-21195 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDPI01000034.1 Bacillus altitudinis strain RIT380 contig34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 20765 32 100.0 33 ................................ AAAATCCGCAGCTACTTTAACTGCGCCACCAAT 20830 32 100.0 35 ................................ ATCATCAACTTCTGTTGTCGCAGAGGTTGTTTTAT 20897 32 100.0 36 ................................ CCGAATCTCCTGCGTTTTGGTGATCGCTAGTTTTGC 20965 32 96.9 35 ...................T............ ATTTGTAATTTTTTAATTATGTACTCAACCAATGT 21032 32 93.8 34 .........A.T.................... AAAAGCACGTTGATATGATGCAGCGTGGAAAACA 21098 32 93.8 34 ...........T...G................ TTCGAATAGCTTTCCAGAGATAACAAGTCTCCCT 21164 32 84.4 0 ...........T.......T.A...A.A.... | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 95.6 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CCTTACTGCTGTCGTACTCTACATGAGTGTGTGAATTGAAATTCCCCTAGCTGAGCAATTTGGTGATTGTCAATGAGTCGCACTCTATATGGGTGCGTGGATTGAAATTCTGTGGTGTTGGGTATTTTTTGTAGTGTTCTTCGGTCGCACTCTACATGAGTGCTTAGCCATTCTTGATTTTAGGTAAGAGAAAACATAGCTAAAGTTAAAGCATGTATGTTTGATCGGAAATTATTAGTGGAGTAACTATACTGATTAAAATTTACTTTTCCTCAAAGATTGGGAGAAGAGTAGTCATTTTAGTTAATAGAGTCAATGAATTAAAAACTTGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TTCTTGTCAGAAGGTAGTTTGAAAGATATATTGACAATTGCGCTTGATATAGGTGTGAAAAACATAACTCTGTCTCACCAATTTTATTAATGAATTCAAAGCTGTTGATGAAATAATGAATAAGTATCTTTAGAGCAATTAAATAGGATTAAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGTGCATTCGCACCTTTCTATTCGACAAAAATGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTCCCTAAAGAATGTTATAATTAAGGCAGAAATCGAAGTCGCACTCTACATGAGTGCGTGGATTGAAATACGAAGCCGTTTTCTAGGGATTTAATGCCGGGGGGTGTCGCACTCTACATGAGTGCGTGGATTGAAATACCGTTACATTACGCTCCAAATTATAGTAAAACTTGTCGCACTCTATATAAGTGCGTGATTTTAAATGA # Questionable array : NO Score: 8.89 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 29872-30170 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDPI01000034.1 Bacillus altitudinis strain RIT380 contig34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 29872 32 96.9 35 ...........T.................... CACTTTCTTGACTCATGATAGGAGTAACCTGCTTC 29939 32 96.9 36 ...........T.................... AAAAGGATAATAACCATCACGCAGCAAGTCCGAAAA 30007 32 100.0 34 ................................ TTCTCGGTTGTGTAGCTTGTGAGGGAGTTGATGT 30073 32 100.0 34 ................................ AGCGATGACAAGGCTCGCAAACACATTGTATTTT 30139 32 78.1 0 ..........C.........A.A...CAC.G. | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 94.4 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TGTGGATTGAAATATGATCAATAAGACTTACATAATTTTCAAAGTTACGTCGCACTCTACATGAGTGCGTGGATTGAAATGAAAAATGCTTGCAATCAGGTGAAAACCAGGCGAGGTCGCACTCTACATGAGTGAGTGGGTTGAAATCTGAAGCGTCGCTGACTTTTTTGGTCAAAATAGGTCGCACTCTACGTGAGTGGATTAATAATTGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCTATTCATTCGACAAAAATAAGAAAAAATGTATATTGTTTGGAGGGGAAAACAAAATTCTATATAGAAACTTGAAGGTTTTGATGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTTCTGCATTTTATACAAATTCAAGTACTATCCAGTTCAAAATCTACACATATGAATAATTCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACGAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGTACCTCATAATGGTCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCGTCTTGCTTGGCAATTTTCATAATCTCTGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGATGATCTCACCATTCATACTGCGTCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATTGTAGGCGAAATAATAATGTCTTCAATTTCAT # Questionable array : NO Score: 8.70 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //