Array 1 1001272-1001970 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022467.1 Salmonella enterica subsp. salamae serovar 57:z29:z42 strain ST114 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1001272 29 100.0 32 ............................. CAGACCAGGGCGTTTCTGGCCGAGCTGGAGAA 1001333 29 100.0 32 ............................. GGGCAACGTAACCGCCGTTATTCAGGCAAGCC 1001394 29 100.0 32 ............................. ACATACAAACTACTGACGGAATGTCAGGATGA 1001455 29 100.0 32 ............................. GTTCCCGATCTCGTTGAATCGGGTTTCTGTAA 1001516 29 100.0 32 ............................. ATGATATCCGGGTGCTGATAGATGCGATCTCA 1001577 29 100.0 32 ............................. CTTGGGGTGTTTATTGATTCAAGCGGTGTTTT 1001638 29 100.0 32 ............................. TCATGATATCTAATTTTTAGCCGTGAGTTTTT 1001699 29 100.0 32 ............................. ACGAGAGAACCATCTTTCTGAGATTTATACTC 1001760 29 100.0 32 ............................. CCAGCTTGTTGATCACGTCTGCAACCTGGCTA 1001821 29 100.0 32 ............................. CCATTAATGCCGCTGGTGGCAAAAGCCGCCTG 1001882 29 96.6 32 ............T................ AATCCTCGTTGCGGGTTAATCAGCATGTCGTC 1001943 28 86.2 0 ....C........C.........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.6 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTTTATTTTCTCTATACGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTCCCATAGCGAGGTATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTACGTTGGTATAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATACATTTAGT # Right flank : GTTGCATAATCATAATCTGTGTAACAGTAGTGGCTTGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCGGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCTTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAGCGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1019373-1021353 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022467.1 Salmonella enterica subsp. salamae serovar 57:z29:z42 strain ST114 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1019373 29 100.0 32 ............................. ATATTCAGCAATACCGGAATTGCCACCACTGA 1019434 29 100.0 32 ............................. CCGTTTTTGTTGATGCGCGTAACGGTCATTAT 1019495 29 100.0 32 ............................. AAACGCCCAATACCAATAACCAACGCTCTGGT 1019556 29 100.0 32 ............................. CATTGAAAGCGATGTTCATGCCAGCATTTACT 1019617 29 100.0 32 ............................. CAAAAACCCCGCGTTGGCGGGGTTCTCATCAT 1019678 29 100.0 32 ............................. GATTGTCTGGATTTAAGAACCTGCTCTAAACA 1019739 29 100.0 32 ............................. ATGAACCATCGTTAATGATGCGTGATATACGG 1019800 29 100.0 32 ............................. ATTTTATTCGCAACTATAATATATCTCTATAT 1019861 29 100.0 32 ............................. ATTACCTCCGGTTGTCTATCGGTGGCGCTGAT 1019922 29 100.0 32 ............................. CTGATATCAAAAAAGCGTTTAAACGCCTTGCC 1019983 29 100.0 32 ............................. TAATTCAACGTATATAAAATGCAATACAGCAT 1020044 29 100.0 32 ............................. TAACGCTGTTTTACACACGCTGTACCGCGCAC 1020105 29 100.0 32 ............................. AACGTAAAATCTTGGCTGAAATGCGCGCCCAG 1020166 29 100.0 32 ............................. TCCCGCGAGAAAATACCCGAAAGCGTTGTCGT 1020227 29 100.0 32 ............................. CGGCTGTAACGCCCATTAGTCCGGGGGATGGT 1020288 29 100.0 32 ............................. TTTCTCTAAGATTTAGCCTCCTTAGAAAATCT 1020349 29 100.0 32 ............................. TCATTTTCTGTAATATTCTACACATTGCTTAA 1020410 29 100.0 32 ............................. CCCGGAACGGCTGGATTTTGTAATGGGAATAC 1020471 29 100.0 32 ............................. TTAATAACCTCACCGTATGGCACGCCCTCTTC 1020532 29 100.0 32 ............................. ATTGAGACCTGATGGTGGTGATAATCCCAAAA 1020593 29 100.0 32 ............................. GTTAAGAAGACCACGCTTGAACAGAAACTGAC 1020654 29 100.0 32 ............................. ATTTTGTGTATTTGATATCCCTGCCAGTTGGC 1020715 29 100.0 32 ............................. CTGGCGGCAGCGTGCAAACGTTTCTGGCTTTG 1020776 29 100.0 32 ............................. CCCGATAGTGAGTCCTGGTCGTTGTTTGATCC 1020837 29 100.0 32 ............................. TCCGCGCTGTAATACACCTGTGCTGAGTAACC 1020898 29 100.0 32 ............................. GGCTATTCCGAACTGGTCTGGAAGACCACAAA 1020959 29 96.6 32 ............T................ CCACGGAACCCCTGCTTGCCACACTCTTTTTT 1021020 29 100.0 32 ............................. CCAGCGAGTCAGACGTTGCCGCGCGGGTACTT 1021081 29 100.0 32 ............................. CTCTTTCTGCAACACCTTACGTGTGGATTCGG 1021142 29 100.0 32 ............................. CGGTCATTCACAACAATAGGTGATTACCCTCA 1021203 29 96.6 32 ............................C CGCAACCGGAGGTTCTAAAAATCTATGCTCTC 1021264 29 100.0 32 ............................. AATACGCAAAGCTGATTTTGTCGAACAGTGCG 1021325 29 89.7 0 ............T..............GC | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAGGATGTGCTCGCGGCAGGTGAAATTCAACCGCCGTTACCTCCAGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCTTTGGGGGATTCCGGTCATCGGAGTAACTGACGATGAGTATGCTAGTGGTGGTTACCGAAAATGTTCCTCCGCGCCTGCGAGGAAGGCTGGCCGTCTGGCTACTGGAAATTCGGGCTGGTGTGTATGTTGGTGATGTTTCAGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACGTGGGGTAAAAACCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTGCCTGTTGCAAATCAATAAGTTAGAGATCTTTAAAAATAAGGAAAAGTTGGTGGATTTTTTGTATGCTAAAAACGGCTTTAAATTCAATTGGGTAGATTTAGA # Right flank : CTTTTCACCAGCAGATCAGGACGTTTTTTTCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGTTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCTGCGTCGCTCATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2147515-2149863 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022467.1 Salmonella enterica subsp. salamae serovar 57:z29:z42 strain ST114 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2147515 29 100.0 32 ............................. GATTTGCGATATGAAAAAATACCTACCTTTAT 2147576 29 100.0 32 ............................. GTTTGAAAATTCGCCGCCGGGAATGCGGGTGA 2147637 29 100.0 32 ............................. GAATTTTCATCATCAAAATTAATATGCTGTTT 2147698 29 100.0 32 ............................. GAGAGTAAAAACTATAGTGTTGGCTTAATGCA 2147759 29 100.0 32 ............................. GGTCCGTATATGAACAAATCTCCTACGTTTTG 2147820 29 100.0 32 ............................. CGGCAGATTCGCACTGCGCCGGATGCCGTATT 2147881 29 100.0 32 ............................. ATTGGGCGCTTTCAATATCTTCCATGATGAGA 2147942 29 100.0 32 ............................. TGGGTGCGTCTGCGTGATTTTGCCGTGTACCC 2148003 29 100.0 32 ............................. GATCATTCGATCATCACAAATGAGGTTAATTT 2148064 29 100.0 32 ............................. CGCCGGCAACCCGCTAAACGGTCCCACGTCTA 2148125 29 100.0 32 ............................. CACCTAAACGTTGAAATAGGTCTGAATCTGCG 2148186 29 100.0 32 ............................. TGCCCGTAGCGCTAGCGCAACGCGGCGATCTC 2148247 29 100.0 32 ............................. TAGATACATTCATCTCATTAGACGTTGACAGC 2148308 29 100.0 32 ............................. ATCTGGATCTCAGGTTTGTAAATAGCCCGTAT 2148369 29 100.0 32 ............................. TAAACATGCGGAATAATTTTCCAGCTATATAA 2148430 29 100.0 32 ............................. GACGGGCGTTTCGGCGCTGATCTCGGCGTTGA 2148491 29 100.0 32 ............................. GCTATCAGCTTTCGCAAGTTCAACCCCAACGT 2148552 29 100.0 32 ............................. ATCATTTTGATTATACTTTAACATTGGCGCAA 2148613 29 100.0 32 ............................. ATAATGCGATCACGGTGGTTGCCTCAAATAAA 2148674 29 100.0 32 ............................. CGGAGTTTCTCGCCGCCGTTGCCAGCTTGGTA 2148735 29 100.0 32 ............................. AGATTTTCGAGCTGTACACCGGGGCGCTAGAG 2148796 29 100.0 32 ............................. GGCGCTTTATCTGTACCGCTGAATGCCGTGCC 2148857 29 100.0 32 ............................. TACACGGAAAGAGGCCAACGCGCTGGCCGATC 2148918 29 100.0 32 ............................. CGCCGTGGATATTTCTAAAGACAGGAGTCACT 2148979 29 100.0 32 ............................. GATTTACCCACGTCGACGATCCCCAAAAATGC 2149040 29 100.0 32 ............................. GCTATCAAGAAAGAATTAAATAGCGCTAAAGC 2149101 29 100.0 32 ............................. GACAAAATCAAGATCACCGCTGTTCAGGGGCT 2149162 29 100.0 32 ............................. AACGAATGCTTATTTCAGAAGAACGCAGCATC 2149223 29 100.0 32 ............................. GTGATGGCTCGGTGGCTACTGGGGTAGAGGCC 2149284 29 100.0 33 ............................. CGGATGGTTATCACTGGCATTAGGACAATCAAC 2149346 29 100.0 32 ............................. TATATACGCCGGACAGGGGCACTGACGCTGCG 2149407 29 100.0 32 ............................. GACTAACCCATGACCACTATTACCAAAGAATG 2149468 29 100.0 32 ............................. CGACTGGGAATCAATCAACAGCCACCGGTAAT 2149529 29 100.0 32 ............................. AATAAGGAAGCGTCCGGGTCGCATTGACAGGG 2149590 29 100.0 33 ............................. GACGGGATGAAAAAAGACAAGGACGTCTAATGC 2149652 29 100.0 32 ............................. TCCATTAAATTTAGATGGAGTTCAAATACCTG 2149713 29 96.6 32 ...............C............. CGCCGCTTATATGGCATGAATAAACCGCTAGT 2149774 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGTGTAGGG 2149835 29 72.4 0 ..................CT..GTTTGT. | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.2 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGATTGTACGTGCGCGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGTTCATCCCGTACCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTCGCCGACGATATGTGCAAAATCTTACTCTCCCTTGATGTAATGATGTATTAATCCCCGAATTTTCCGTCATACGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGCGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGTGTGAAAATGTTGTTTATAAACATAGGGATGGCACTAGA # Right flank : GGAGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGATGGCGGCGTAAATGCCTTATCCGGCACCGATCTTATCTCGGCGTTGCCTATTTTTATAGTGAAGGCATGCCTCAGGATTATCGTCAGCTTCTCATCCTTCCCCGTACAGAGAGATATGAGGCAGTGTGTTTAACGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAATCGAAGCTTCTCATCCTTCCCTGTATGGAGAGATATGAGGCAGTGTGTTTAACGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //