Array 1 187150-188947 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUJD01000004.1 Salmonella enterica subsp. enterica serovar Kentucky strain 159230 contig04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 187150 29 100.0 32 ............................. GCCGATATCGGTATTATATCTGGTATTATTTT 187211 29 100.0 32 ............................. ACGCCACTGACCTGGTGGCTATGTCGTTTGCA 187272 29 100.0 32 ............................. GGGACTTGTTAATATTTCTCTCACTGACTACG 187333 29 100.0 32 ............................. GGGGTTTTATGAGCAAGGAAGGGGGCGTCACC 187394 29 100.0 32 ............................. TTCGCAGCGAGCACGACGAGTGGTCTGATGCC 187455 29 100.0 32 ............................. CGCCGATCAGGAGAAGTTAAATAAACAAATGG 187516 29 100.0 32 ............................. CGAATGGCTCAACTTTGAAGAGTTCAAGAAAG 187577 29 100.0 32 ............................. GCCATGTTTTTCGTTTTTGCATTCATATAGTA 187638 29 100.0 32 ............................. CCTACAGCAACGAGGAATATCACTAAACGACT 187699 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 187760 29 100.0 32 ............................. CGGGCCATGTTCTTTTCCCTCTAAAAAATCCG 187821 29 100.0 32 ............................. ATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAA 187882 29 100.0 32 ............................. AATATCCACTTAAACACAACCATTATTCGCTA 187943 29 96.6 32 ............................C GTTGCTCAAAAAACTGAACGAGGGTAACTACC 188004 29 100.0 32 ............................. GCGGAGAATTATATATCGGAATGTTACAGGAA 188065 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 188126 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 188187 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 188248 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 188309 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 188370 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 188431 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 188493 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 188554 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 188615 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 188676 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 188737 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 188798 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 188859 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 188920 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 198073-199749 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUJD01000004.1 Salmonella enterica subsp. enterica serovar Kentucky strain 159230 contig04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 198073 29 100.0 32 ............................. AGAAGAATTCTTTTGCCTGCGCGTCGTTCATA 198134 29 100.0 32 ............................. TAACTGACACTGAAAGAAATAACCCTCTGTGG 198195 29 100.0 32 ............................. CCGCGCCGGTGTGGCACCTCCACGAATCGTTA 198256 29 100.0 32 ............................. GCGCAAATACGCGGCGGTGCAGCTACCGAAGC 198317 29 100.0 32 ............................. ACGCCCTGCACAATAATTTACGGCGGGACACT 198378 29 100.0 32 ............................. TGCCACCGGCGTGCTCCATATGACGGGCGTTT 198439 29 100.0 32 ............................. AATTCAGGAATGTTTTGCGGGTAAATTTTGTG 198500 29 100.0 32 ............................. TCCACCGGGAAAATAGTCCAAATGGCTAACGC 198561 29 100.0 32 ............................. CGCAGAAGGCAGCGGGCAGTGTCAGCGCTGAC 198622 29 100.0 32 ............................. CACAATGAAGAGGGAACAACAAATGGACTCAG 198683 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 198744 29 96.6 32 A............................ TTAATCCCCACGGCCAGGAGGTATTGATCAAC 198805 29 100.0 32 ............................. GTGCACGTTAGCCGCGTAGCTGAATTAGGTTG 198866 29 100.0 32 ............................. AGGCACGAAAAGCCATGGCCGCCGCAAAATCC 198927 29 100.0 32 ............................. GGCGAGCAGATAAACACCGAAAACCTGCACGC 198988 29 100.0 32 ............................. GATTTATCAAATGAAACTCTTCCACGGCAGCA 199049 29 100.0 32 ............................. CCCATCAAGATAAACATCATAGCGAGCACCTG 199110 29 100.0 32 ............................. CGGCCGAACGTTACGGCGACGAGGTCGAGAAA 199171 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 199232 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 199293 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 199354 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 199415 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 199476 29 96.6 32 ..................A.......... CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 199537 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 199598 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 199659 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGT 199720 29 100.0 0 ............................. | A [199747] ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTCTAACAGACCGGAGGAAGTGAGGTGGCTTAACCATGGATAACCCGCGTTATCGCTACCACCAGCGCTCATAAATCCCGCGCCATCGCTAAACGCATTAAGTAATTTTTCCCGTAAAGCGGCGGGAAGAGTGGCGCTCAGAATAATAGCGCTACCGCCCTGGGCGGCATGGAAGCGCAATAAACCTTCCAGCAATTTAACCATATAACCATCATAGGCGTGCACTTCATCCAGCAGCAGGATTTTGTCGCGCATCCCTAGCAATCGGAGTGATTGATGGCGAAAAGGCATCACCGCCATTAAGAGTTGATCCAGAGTACCTACGCCGACTTCCGCCAGCAGCGCTTTTTTGCGTGAATCTGCAAACCAGGTATGGCACTCAGTAGTCGCGTTGCCATCATCACGGGCATAATCTTCAGCTATATTTTCTGTTGGCTGCCAGATGGATTGTCGGAAAGAGTCCGACATTTCTCGCCCACCGTGTGCCAGGATGAGCGATG # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATAGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //