Array 1 684-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJDYS010000004.1 Corynebacterium diphtheriae isolate YEM0077, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 683 29 96.6 32 ............................G TTCCGTAGTCACCTAGTACAGGTACTGCGGCC 622 29 100.0 32 ............................. AACCCCACGGTCGTAGAGTTCAAAAAGAACCT 561 29 96.6 32 ............................T ACGCCACCGCTAAAGGCACCGCATGGCGGGTC 500 29 100.0 32 ............................. CTTAACGAACGCCGTCGTAGTACCCCCGTTTC 439 29 100.0 32 ............................. ATCATTCCCACAGCTAAACGGCTTGCCAAAAT 378 29 96.6 32 ............................G GACGAGTCCATCTCTGCCGAAAACGTGATCGC 317 29 100.0 32 ............................. GATTGGATTAAGCCGGATCATCTTCACCTCCT 256 29 96.6 32 ............................T GATTGAGCTTGTCACATTCGGCGTCGAACCGA 195 29 100.0 32 ............................. GTAAAGGTATGTTGGGGCAAAGTAGATTTCCC 134 29 100.0 32 ............................. CATCTGCCATTTTGTCAAATCTTTTTGGAAAA 73 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.8 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAAAAATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAAGACTAAGCAAATTTGGGTGAATAGCTGATCCTAAAACAGTAGAAATAAAGATGAAGTAGAAAAATTGCTGAAACAAAGTTATATGTAGTAAGTTCTAACTGTCTCTAAACATGCAGCTTGATAAGT # Right flank : CTTTTGGCCCTGTGGAGCCGTAGGTTCGTGCGAGTTTTCCCCGCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 138564-136644 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJDYS010000003.1 Corynebacterium diphtheriae isolate YEM0077, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 138563 29 100.0 32 ............................. GGAGGTAGCCGCCGATTCTGCTAGCTTTTTTA 138502 29 100.0 32 ............................. CTGTCTACCGTTGTTGGCTCACCCATAACTAG 138441 29 96.6 32 ............................G AAGAACAAACGGAACTCGCCGATTCCCTCGGA 138380 29 100.0 32 ............................. ACCACCCCAGTTGTAGCGCGCACCCTCAAGAG 138319 29 100.0 32 ............................. ACGCCACGACATGGTGGAGCCACCGTGGGAGG 138258 29 96.6 32 ............................G AAAAGCCCCCACAGGGTGGAGGCTCAAACAGA 138197 29 96.6 32 ............................T AAGGTGCGAATACATAATCCTGGTATCAGGGA 138136 29 100.0 32 ............................. TTGAGCTGGGGGCCTAGCAATGATCGGCAAAA 138075 29 100.0 32 ............................. GATCAACGCGACGGCGCGACTACCACGGGTAG 138014 29 96.6 32 ............................G CACGCGATGGATTCGGCGCGGCTTGCTGCGGA 137953 29 100.0 32 ............................. GATCGGTTGGGCGTATCAAGATGTTCTTTGAT 137892 29 96.6 32 ............................T GCTCTTTCGAGTTTCAGCAAGCCCTTTCTCCG 137831 29 100.0 32 ............................. CAAGTGGCTATCGGTATCGAGGCGGCATCTAG 137770 29 96.6 32 ............................T TTTCCGTGAGCATCATAGACCGTCAATCCCAG 137709 29 100.0 32 ............................. CACAGACGATGCGACTTCCTCAATCGAGAAAA 137648 29 100.0 32 ............................. GATCAACGCGACGGCGCGACTACCACGGGTAG 137587 29 96.6 32 ............................G CACGCGATGGATTCGGCGCGGCTTGCTGCGGA 137526 29 100.0 32 ............................. GATCGGTTGGGCGTATCAAGATGTTCTTTGAT 137465 29 96.6 32 ............................T GCTCTTTCGAGTTTCAGCAAGCCCTTTCTCCG 137404 29 100.0 32 ............................. CAAGTGGCTATCGGTATCGAGGCGGCATCTAG 137343 29 96.6 32 ............................T TTTCCGTGAGCATCATAGACCGTCAATCCCAG 137282 29 100.0 32 ............................. CACAGACGATGCGACTTCCTCAATCGAGAAAA 137221 29 100.0 32 ............................. CCTAATTTGGTGTGTGACCCTAGTGATGGGAA 137160 29 100.0 32 ............................. AACATGTTTGACACGGAGGGCAAAATGGACAC 137099 29 96.6 32 ............................T CATGAACGGATATGAAAAATGCGGTTGGTAAA 137038 29 96.6 32 ............................G GCTCGGATACCGTCGATAAGCTGCCGGACGCC 136977 29 100.0 32 ............................. TCCCAGCACTCCTCCATCGCTTTCCGCTCCGA 136916 29 100.0 32 ............................. ATGAAAACATGCTCAAAACTTGACACAGGACG 136855 29 100.0 32 ............................. TGTGGCTGCCCAGATGGGACAAAGTCTGATCG 136794 29 96.6 32 ............................G ACTCGCCCTACATAATCGGGGTATCAATACTG 136733 29 96.6 32 ............................G CGCTACGTTGACCTATCGAGGCCTTCCTCTGT 136672 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.6 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CCCACCAGCGGGGATGAGCCCCTGTCTACCGTTGTTGGCTCACCCATAACTA # Right flank : AAAGCGCGGATGGCGTCGATGTATTTGCGTCAGCAATATGACGCGAATATGTCGAAGCAAGGCAGATACATGCGGACTGATCGGCCGCGATTGATGCCGGAAGAAATCTACAAGATTGCAGGTGGCGACCGAGATATTGCGGTCTCATTGCTGCACAAGAACGGTTTCTTCTTGGATGCCTCGCCAACATTGGATTCGAAGCTTAGTTTTTTTACACGGGACAAAGTCGTGAAAGAAGCGATGGAGAGCGCTCGTGTGAAGTTGAAAGCACGGTATGGCAAAGAGTTAAAGCGTGAGGCGATTAAAATTGGTAGTGGTGATCCTCCGAGCGAACCGCCACGATGGTCGAAAAATGGCGGTGGTGATGATGAGATTCGGAGGCGGTATTTCGAGGATTTGCGTACAGCGGATAAACGCGTGCCAATTGAACACATCGTTACCGGGAAGGTGCATAAGAACGTTATCCAAGGTGCCCATGATCATTCCAGACGTTCATGGGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //