Array 1 19151-17802 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWB01000030.1 Photorhabdus caribbeanensis strain HG29 scaffold_0030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19150 28 100.0 32 ............................ TCAGCCCCCTACAGAAAAGTAAGACGCAAAGC 19090 28 100.0 32 ............................ AGTCATTGCGGTCTTTTGTTGCAAAATCCCTG 19030 28 100.0 32 ............................ CGCGACAATGGCTCTGTATCATGGATGGTAAT 18970 28 100.0 32 ............................ ATTCACTTCCCTGAGATTTATGAACGGTCAAA 18910 28 100.0 32 ............................ ATTCACTTTATCTTCGTTAAGAATGTCTAAAA 18850 28 100.0 32 ............................ GTATCTCTTGTATGTCCAGCGCCGCTAACGTT 18790 28 100.0 32 ............................ TAATTTCATTCGAGCAGTAACAGCAGTTTGGT 18730 28 100.0 32 ............................ AATGTGAGCATGATCCCTCGCTGGCTGGCGGC 18670 28 100.0 32 ............................ GCTGCACCCTGATTTGTTCAATGAATCGAGAA 18610 28 100.0 32 ............................ TTTTGATGTAAGTTGTCCTATCATTCCTGATG 18550 28 100.0 32 ............................ GGTCAGGCGCAGAGCGTCAATTAGACCCATCA 18490 28 100.0 32 ............................ TTGATCGGTGCGTGGCCGCGCACTGCGTCCAC 18430 28 100.0 32 ............................ ATTCATTGATTCTATCATCTCGCGATAACAGC 18370 28 100.0 32 ............................ ATGATCGCGTGACATCTAAACGGCGGGTGCTG 18310 28 100.0 32 ............................ TTGCCATGTTCCACATGCGCGGCCCATATCAA 18250 28 100.0 32 ............................ GAAAGAAGTTACTGTATCCTGTGTTGCCATTG 18190 28 100.0 32 ............................ TTCATGTGCCGCGCAAATTCAGCTTTATTGCC 18130 28 100.0 32 ............................ CTAAGACATGGGGTGGTTCAGTGCGCCGAATA 18070 28 100.0 32 ............................ ATGAATGCTTTGGCTTGGGAGCGTGAGAGTCC 18010 28 100.0 32 ............................ TAGGGATATTCGGCGTACATTTAAAACACTTG 17950 28 100.0 32 ............................ TGTGCCTTAGTTTTGCTTTTTTCATAGCCCTA 17890 28 100.0 32 ............................ TTGCCGTGTAGTCAAAAAACGACTACTATAAT 17830 28 78.6 0 ..GA.....T..............T.TT | T [17805] ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACCATTTAATTACGCTTTGCTGGGTTATATAAGAGGTAGAGAATCAATTAACAGGGCGGCACAAAATAATATCACTCAATTTTTGCAATCTTTAGGAACAGTAGATAATAAACTTATGCCCTTTGTGGTAAATAAGTGAGAGAATTGCCATTGAGCTAATGCCCCGATTTATAATTGATAGCGTGTGCTCCAAATATGTCGCTGAATAGTTACTCAGTTGATGTTGTTGGGGACGCGCTTGTTAGATGGGATTGTTGGTTCCGTGGTGAAAAGTAATGTGACTAAGTGACAGAAGGATGGAACTCGTTATAGAAACATTGAATAGCAATGTGGTGACAATTGCTTAGGATGTTACTCTTCTTAGTTTTGACCCTTTTTTTATGGTCAATTTTAACTGATTGATTTTTAATGAAATATTACTTCTCTTGTAAAAAAGGGTTTTTTCGTTATTTAATAAATATATGCTTTAACTGTCAGTAGGTTAACGTTAATATATAAC # Right flank : AACGGAGGCAATTATGAGTCATACCCGTTACGAAACTGATGTGGTCGTTTGGGCAAATGAGCAAGCAGCATTATTGCGTGCAGGTAAATTCTCTGAGATAGATATAGTTAATATTGCCGAGGAAATTGAGGACGTGGGTAAGAGTGAAAAACGTGAACTAGCAAGTCGTATGGCAGTTTTGTTGTCCCATCTTCTGAAATGGCAATTCCAACCTGGGCGCCGTGGTTCAAGCTGGCAACGAACTATCAAGGAACAGAGAAAAGCACTGGCATTGCATATAAAAGAGACACCCAGCTTGAAAAGCACAATTGCTGATGAAAACTGGTTTGCTAAAGTTTGGGCTGATTCAGTTTCTTCCGCTGCCGATGAAACAGGATTGGATATGTTCCCGGATGAATGTATCTGGAATATAAATCAGATCTTTTCCCAAGAGTTTTATCCTGAGTAAGCTTTAATGAGTTGACTTATTTGACGCACTGACTTCGGTTGGTGAGTTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 797-1479 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWB01000009.1 Photorhabdus caribbeanensis strain HG29 scaffold_0009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 797 28 100.0 32 ............................ ACGCAGCAAGCAATTGATTGACATATAACACC 857 28 100.0 32 ............................ GTATGGCACCCGCTGACTCAACTGTCCATACA 917 28 100.0 32 ............................ GTCCTGGTATGGGGAAAACGATGATGAGTACG 977 28 100.0 32 ............................ ATATCCGCCCCGTCCTTACTACCAGCCTTCTC 1037 28 100.0 32 ............................ GGCATTTATGCCAGTCAGATTTAAGGCGCTGA 1097 28 100.0 32 ............................ TGTTCTTGAAAGAAAAAAACAAGAAGCTGTCA 1157 28 100.0 32 ............................ CGGTCCTGACTTCTCGATATGTAATCGAGAAC 1217 28 100.0 32 ............................ GAACTGCAAATGTTGGCCGGAAGTTCACATAC 1277 28 96.4 32 ....................T....... GTCTGGTAAATCAGAAGGCCGGACAATTCAGG 1337 28 96.4 32 .......................G.... AAAGAAATACTGAGGGCAGCAAAAGACGCTGA 1397 28 96.4 27 ........................A... CAGAAGGTTTTCCTCTTCTCCTATCGA 1452 28 67.9 0 ...TG....TAC....AT........GT | ========== ====== ====== ====== ============================ ================================ ================== 12 28 96.4 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTAAATAATCACTTTTTACCTGTAATGTTTATATTTGGTTTCATAATAACATGCAATATAAATTATATCTTTAGTCAAGATAATTATGTTGCTGAAAATATGAATTGGAGACTTGGTAAATTGGATAACATTGAATTTTTCAATATTTAAGTACATGGTGAAATTAATACAACTGTTGGAATATTGGATGATGTCACTATTGAAAAAGGCTGCGAGATTAAGAGGTACTGATTTTTGTTGATAATCGAGTTCAGTGAATTGGCTTCATCATCGTTGAAGCTTTATAGGCAACAATTCTCACTTACTGCACAGATCTTAGGACAGACGACTTAAGTATGTGATGATATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTGATTGATTTTATGGATAAATTAATTATCACTTATAAAAAGGGTTTTTTCACTTTTTAGTAGCTATGCTCTTTAAAAATCAGCACGTTAAAGTTAATATGTAACA # Right flank : TATAATTATTCCTGTTTAGGGAAGGTACTATACCTGTCATCTTTCAAGTTGCCTCTTTGTTGGCTGCATTCGCTCACCCCAGTCACATAGTTATCTATGCTCCCGGGGATTCACTCCCTTGCCGTCGCGATGCATCTTGAAATCCATAGGGTATATGCTGTTAATTAGTAAAGAATTGTAAATTTTTTTAATTTATCTTTGAGATGTTTTACTTGTGTGAAATTTATGCATAATATTTGCCATAAGTGAAATTAATTAGGTAATTCTACATTATGGATAACAACTTTTCTCCGAGTGACCTTAAAACTATTTTGCATTCCAAACGCTCGAATATTTATTACCTCCAATATTGTCGAGTATTAGTGAATGGTGGCCGTGTTGAGTATGTCACTGATGAAGGAAAGCAATCCCTGTATTGGAATATCCCAATTGCAAATACCACCGTTATTATGTTGGGAACGGGTACTTCTATTACTCAGGCAGCAATGCGTGAATTCGCT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 184791-186250 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWB01000005.1 Photorhabdus caribbeanensis strain HG29 scaffold_0005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================== ================== 184791 28 100.0 32 ............................ AAAATTGAATGTAGGGACTGCCGCTATTGTTC 184851 28 100.0 32 ............................ CTCCTGACCTCCCTACGCACTAGGGAAATAAT 184911 28 100.0 32 ............................ CTTACGCGGCATGGGCGTTACTTTGTTATAAA 184971 28 100.0 33 ............................ AGCAACCCGCATTAGTTTAATGGAGGCCATTAT 185032 28 100.0 32 ............................ AGTAAGTGATATATATTTGTAATTTGTTTCAT 185092 28 100.0 32 ............................ GTGCAAGAATTAATGCGGAATGCGTTGTTTTA 185152 28 100.0 32 ............................ ATAAAACCATCGACCATGTTATTTGCGTTGAA 185212 28 100.0 32 ............................ AAAAGAGTATCGCCAGTGAATACCCCATCCAT 185272 28 100.0 33 ............................ CGTCAGTTTCTTACATTGCTGAACAGTGTGAAA 185333 28 100.0 32 ............................ TGCGGGATTTGCTTTGATTCCGAATGGCCGAA 185393 28 100.0 32 ............................ TGGGAATATCCATCACCGAATTGAACTTTTCT 185453 28 100.0 32 ............................ TCACTGAAATTTGTTAAAATTCGGCTCTATTT 185513 28 100.0 32 ............................ GTAGTATCGGCGCAACTGTGACACACGGGACT 185573 28 100.0 32 ............................ ATTAAAATCAATCAATTCATAAAAATGTAATT 185633 28 100.0 32 ............................ TTTATCGACAGGTGCTTTGATTGATAATCATC 185693 28 100.0 32 ............................ TGTCAGCATGTTAAAAATAGTTGAATTTGCAT 185753 28 100.0 32 ............................ ATGAGGGAAGACTTTTACTTACCAGATAAAAA 185813 28 100.0 32 ............................ GTGAATGATCAAATTAGCGTAGAGGACTTGCT 185873 28 100.0 32 ............................ CTATTATTGTTACAGGGAAAATCTCTACGTTA 185933 28 100.0 32 ............................ TGGAATTAAATTAATCGTCAGACGCTTGGGAC 185993 28 100.0 82 ............................ GGTCAGGCCGGTTTGAATACGATGCCGGCATGGTACAGGCAGCTTAGAAAAAGAGGCACAACATAGCTATAATAGAAGTGTT 186103 28 100.0 33 ............................ GTGAATCACAACCTCGCTTACCGGGGCTTCAAA 186164 28 100.0 32 ............................ CGTTGAAAACAGCATCGACAGTGGCTTTCGGT 186224 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================================================================== ================== 24 28 99.9 34 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCAGAGGAAGCAGGTCTGGATGTTGTTATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTAGTTACTTAGTGTCTAATCAATGGACGAAGGGAGCCTGGCACCAATATCTAATACAAACTTAAGGCGTTGGATGAAAAGTGGTGTCCGGGTTCCAGGTGTTCAAATAATGTTTAAGTTGGATATTGAGTTTACTGTTCCAGACATCTTATAAAATCTGCTTTTACAGTTATTACAATATCTTAAGGCAATTTTAGTTGTTCTTATGGTTGCTAAGTTTTGCCAGAATCAACACTTTTATTGCTATAAGATAGGTGTTTTTGCTGTACTCCAGTTTTAACCCTTTTTTATCATCAAAAAATAACCTATTGATTTAAAAGAAAAATAAAGTATCTCCTAAAAAAAGGGTTTTTTCATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : ACACAATAACTGCCTAGGCTGTTTGGTATAAATAGAGGATTAATTGCGCAGTCTTGGGGCCAGTAGCTGATTGCGGATGGATTCTGCTAGTTCATCTAGAGAAGGTTGCTCTGGATGTTCATCAGATGTTTCATAGGCTAATTGTGCTTCAGCCAAATAAGTATGTACAGGTTGACCGTTGTCATCTTCCATCACAACGTGATACCAGGGAGCGGAACGCAAGGTGGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGAGAATATTCCACATCAATATCCACGATGACTCCTAAATAGCCAAGAAGCTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAAAAGATCTTGCATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTGGTTGAAGTCTTTTTTTTGCTTTAATTGCGAGTATAACTTCATCTATTTCAGGTTAGCTGTAGTAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 46416-46269 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWB01000010.1 Photorhabdus caribbeanensis strain HG29 scaffold_0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 46415 28 100.0 31 ............................ CGAAACGATATCTGGTAGTACACCTTCCACT 46356 28 100.0 32 ............................ TGGGGCACATAACCTTCAGGGAACCGGTAAAT 46296 28 96.4 0 .....................C...... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGATAGCGGCCGTGGAATTTTAACTCATCAGGGAGATGCCATTAGAAATATTGAGGGTTTATTTCCTGGGGCTATAACAAATGGCTTTCATTTGGCAACAAAAGGGGCTTGTTATGCTAGTGCAACGTCTGGGGTGGCTACAGATGGCAAGCCAAAATCGGTAGGTCATTTTACCCCGGATGTTGTATACACTGAATATGGTTTTGGGTTCGACGCGTCAAGGGTTGTTCCTGTGGCCTCAGAGAACCGCCCCCGCAACATAGCCTTTAACTACATAGTGAGAGCAGCGTAATGTCTGAACAAAAATACGCTTGATAGCTAGAAATAGAAGCAGAAGCTGTTTTCTACTTGGATGGGAAAAATTTTGACCCTTTTTTAACGGTAAATTTTAATTTGTTGATTTTTAAGTAAATATTATTTGTCCCGTAAAAAAGGGTTTTTTATTTTTTTTAATAATTACTCTTTAACATTCAACAGGTTGAGGTTAATATGTAACA # Right flank : GACAACACTACGTTGTTTTCCTCAGACTTGTGGATAGTTCTTCTAGACGGTAGCGAGTCATATTAAGATGATTAGGGGTATACAAGTATTGGTTTATGAAAACAAGTAATACTTGTTTTTAATATGGATTTTATTTTTATTGATTGTTGGAAATGTGACTGCTTAGACATTCTTAGATGATAGTGAAGGATATAGGGCAGAAAAGCCACCGAGTGGTGGCTGGTATGTTATTGTGCTTTCTTTCTAAAGTTATCGTCATTTTTGACGAACTCAAAAGCATCAAGGATAATACCTGTTATCCTCAATATATCTTCTGGCGCTTCTATAAATATCCTTGAGTTATTAGCAGATAATCCAGCTCTATTAACTTCGTTGGCTAATATATCAGTTAGCTCAATAGGTATCTGGATGTAAGGTTTATTCTTCTTGTCAAAGTATCTTATTATCCATCTATTTGATTTTCCTTGATAAAGAATTCCAAAGTAAGATTCTGTATCCTT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 51715-49767 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWB01000010.1 Photorhabdus caribbeanensis strain HG29 scaffold_0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 51714 28 100.0 32 ............................ TTAAAATACTTTGCCATCGGTAACGGAGGCCA 51654 28 100.0 32 ............................ CAACCTTGCAAAAACCAGAGAGGGCCTGAAAT 51594 28 100.0 32 ............................ GTTGGGGGCCGCGTGATGCGTGGTCCCTGACA 51534 28 100.0 32 ............................ CAACGGTGCGGTTACTGGTAGAGCAACTCATA 51474 28 100.0 32 ............................ TGTTGAACACATTCATAACCTGATGGGTTTTT 51414 28 100.0 32 ............................ CGAAGATTGGAAGAAAGATTTTACATGGTTGC 51354 28 96.4 32 ..A......................... GCTATCTAATGCATCTTGAGCATTTGCATAAT 51294 28 100.0 32 ............................ CTGCGGTAAATGCCACAGATTTCTCAATAATT 51234 28 100.0 32 ............................ TAAACTTGAAGCTCGAACCACTTCATGAACGC 51174 28 100.0 32 ............................ CAGAGGACAGTAAATCGGGAAAAGCAATTGGG 51114 28 100.0 32 ............................ AAAATTCAACCCATTGCCTGGCGCTATCTATT 51054 28 100.0 32 ............................ TGACACTTTTTCTCTAACTCATTCATTTCATG 50994 28 100.0 32 ............................ TTGACTCGTATCACGTAGTATTTCTAATACAA 50934 28 100.0 32 ............................ GAAGATCAGCAGTAATTTTAACTAATTCAAAT 50874 28 100.0 32 ............................ ATGCTGGCTTCATCTAAAATAACCAGCAGCGG 50814 28 100.0 32 ............................ ACGGGGGCAAGCAACACACGTACTACGACACA 50754 28 100.0 32 ............................ ACCATCCGTTTGTTGCAGGATTGATTTGATTA 50694 28 100.0 32 ............................ CCAACGACTGACCCCCTTCGCTCCACGCCCAT 50634 28 100.0 32 ............................ GATTGCGAATATATGAAATTAAAACAGGAGCA 50574 28 100.0 32 ............................ CCAGAAATTTCAATAAAGTGGGCTCCTTCCTT 50514 28 100.0 32 ............................ ATCATGGGGTATCTGTTACAGAAACCACAAAA 50454 28 100.0 32 ............................ AATCCACAAAAACAAAAACCAAAGCAACAGCA 50394 28 100.0 32 ............................ AGAAGCAAGAGCCAGAGAACTCTCATCGCCAA 50334 28 100.0 32 ............................ GGTCGATACAATTTAAAGCCCGGAGTCAGTCG 50274 28 100.0 32 ............................ CATACGGGCACGGATTACCGATATACTTAGTC 50214 28 100.0 32 ............................ TAAGGTTTCCCATATGCCTAAGTCGCCAGACT 50154 28 100.0 32 ............................ ATCGGGAAAGGTGAATTGGACGGATATTCTGC 50094 28 100.0 32 ............................ TTCCGAAAACACCCCGCTCGTATTATCATTAT 50034 28 100.0 32 ............................ TTATGTTATAGTGGAATGATTTCAATGTTATT 49974 28 100.0 32 ............................ AATCTTATCCCGAAGGATACCGAGCAACGCGT 49914 28 100.0 32 ............................ CAAAACCGCCACGCCTCATCAATCGCGATTAA 49854 28 100.0 32 ............................ TGGCTTATACTGCATCCGGCCAGTAAACAGAA 49794 28 92.9 0 ....................A...A... | ========== ====== ====== ====== ============================ ================================ ================== 33 28 99.7 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTATTGATAGCGGCCGTGGAATTTTAACTTATCAGGGAGATGCCATTAGAAATATTGTAGGTTCATTTCCTGGGGCAATAACAGGTTACTTTAATCTGGCAACAAAAGGGGCTTTTTATGGTGGTGCAACTTTGGGCGTGGGTACAGACGGTAATCCTAAATCAGTGGGCCATTTTACCCAGGATGTTGTATACACTGCATATGGTTTCGGATTCGATGCGGCAAGGGTTGCTCCTGTCGCACCAGAGAACCGCCCCCGCAACATAGCCTTTAACTACATAGTGAAAGCAGCATAGTATCTGAACAAAAATACCCTTTAAATGAGAAATAGAAGGGGAGGGGGTTTTACTTGAATGGCGGAAGTTTTGACCCTTTTTTTACGATGAATTTTAATTTATTGATTTTTAAGTAAATATTGTTTGTTCCGCAAAAAAGGGTTTTTTTATTTTTTATAACGGTTGCTCTTTAATATTCAATAGGTTGTGGTTAATATGTAACA # Right flank : ACCAACATTCTTACTTACTAATCTATTTTCAGAACTGGAGGCTTAAGTGTATCGATGAGAACAATGAATATGTGTTTTATGAAGATAGAGAGTGTTGTGACATTCCAGAACACTGTTGTTTAGATATTCGTGTCCAAATGCCGGAAGATTTAGTTTGGAATTTAAACTAGAAGGAGTTGAAGAAGGAGATAGAGGGAATAAGTGAAGAATAGTTTTAAGATATTAAATATAAATGGTTTGGCTATATTTTTGACTCTAAGATATTTAATTGCTTATTGATTACAATTATATAAAAACGGTCAGTCTCCTAATAAATAGGAATGATGTATTGCTCTTCTTTCTGAACTAGACTTTAATTTTAATAAATTACAGTCGGATTGTTTTTACAGTAATTAAATATGTTGATTATAAAAAATATTATTTTACTTAAGGAGTAAATACATGAGTCAAAAAAATGATTTTAAAGCTTTTTCTATTGGCAATAATGCTAATGTAATTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 54684-53818 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWB01000010.1 Photorhabdus caribbeanensis strain HG29 scaffold_0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 54683 28 100.0 32 ............................ ACCAACTGCAATTTTGGGTGGGGGTAAAGATT 54623 28 100.0 32 ............................ GCTATGTAACAGATTGTTACGTTCGATTAAGT 54563 28 100.0 32 ............................ TGTCTTCGTAAAGAATTGGGTCTAGCCTATAC 54503 28 100.0 32 ............................ AAGAATAGTGCATCATTTTCAATAAATTGCAT 54443 28 100.0 32 ............................ CGCCTTGATTTCAATAGCTCATGAACGTAATC 54383 28 100.0 32 ............................ TATTAATAATCGATTAGTACCAGCAAACTTGA 54323 28 100.0 32 ............................ GCTAGCTTTAATTGCATTGTAGTGGGCTTTGA 54263 28 100.0 32 ............................ TGAGTTTCAAGCGGTCGGTACAGAATGCCCCG 54203 28 100.0 31 ............................ AACAGCACCCCTCTCTGCTTGCGAGAAACAC 54144 28 100.0 32 ............................ TTATTTTTAGAGTTCCAGTCGCATATAGCATC 54084 28 100.0 32 ............................ ACCCCCATGCGTAAATAGAACGCTATATATTT 54024 28 100.0 32 ............................ ATTTCACCGCGGGCCAATAGCTAAATTGTTCC 53964 28 100.0 32 ............................ AATGGGAAAAAAGACGGATTACAAATCCTACC 53904 28 100.0 32 ............................ ATTAATTCAAAATTCGGATGTATTCCTGCTAT 53844 27 92.9 0 ........................-..T | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.5 32 GTGTACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGGAATATTAGCCTTTCTCCTGATGCATCTAAAACATATCTTGAGTGTATGAGATCAGCGACAGCGAATGAAATTAGATCTGTTGATAACAGAACAGGAAAAATATCTGATGTCATCACATATGGCAATGGGCTCGATATTGTGGAGTCAGGTAGATATGAAGGGTATATCATCACGGAAGAACATTTGTATAAGGAAAAATCCGGCTCTTACGACCGTTATTATCTTGTATCACCGGATGGGAAGAAATCGATTCCGCTGAGTGATGAATGGGATAAGGTAGAAGATTTCTTGAAACGTAGTCGTTAGCTAAGAAAATTGTGTCAATGGTAACTTAAAAACGCAGGTATTCCTGAACCTGATTTTTAACCCTTTTTTAGCAATCAATTATAACTTATTGATTTTTAATGTAATTCAATCTCTTCTTTAAAAAAGGGTTTTTGAGCTTTTTATAAATATATTCTTTGATAGTCAGTGGGTTGGAGTTAATATGTAACA # Right flank : TTTTAAAGTTCTAGTTGTGGTTTAAAGTTATAAAAGCAAGGAATTTCTATCAATTGATAAGATTGGAAAATAATGTACGGATTTACACTTATATTTATTTCTTAGATTTCTATTTATATGAGTTGAGATTTTCTTGGCTTTATTTTTTTCTGTATAAATAATTAGCAATTCTCCACCAGAAATAGAACCTGCGGTCTGGGCATTTAAGGGTGCGATGTATTGCTTTGAACCATAAAAACGATGTGTGTGAACAGATAACTTCGCTGAGTAAGCGTGCTTTTAAATGGTTTAGCTCTTCTTTGTGTGGTGATATTTTATTTTTCCGTTAATACTTTGCACTGACTAGTTTTATCATTTTTCAGATATGGATTATATTAAAAATGTCAGATTCAGCCAAATAGATTAATTTGGGAAATGTAGATATGTGCTGACAAAATGCAGGCAAATCATCATAAAATTTCGATGCTTCACACTATTTCTGCCAGGTTTTTCGCCAAGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //