Array 1 8602-11254 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXOT01000013.1 Salmonella enterica subsp. diarizonae serovar 48:z10:e,n,x,z15 strain BCW_1538 NODE_13_length_125215_cov_5.83345, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8602 29 100.0 32 ............................. CTTGCCGTATCGATGGGATGGAAAGGTGAAGC 8663 29 100.0 32 ............................. CAGGGAGGTGCAGCATGAGCATGAAACTCACC 8724 29 100.0 32 ............................. AAGAAGAGTTGGTGATAAGTCTGTACGGGAAA 8785 29 100.0 32 ............................. GTATCTGAACGGACTCGCCTTAACCGATGTTC 8846 29 100.0 32 ............................. TCTCGCGCAGTTCGTCGATATCAATATCATCA 8907 29 100.0 32 ............................. ACTCCAATCCGGATACTTTCCAGAACGGCGAA 8968 29 100.0 32 ............................. GCCGCCAGAAATACCGCCAGTCTCGCAACCAA 9029 29 100.0 32 ............................. GTTTCAGCGGAGATCTGAGTAATCATAGTGGT 9090 29 100.0 32 ............................. AACGAAGCCATAAGAGAAAGAGTTAACCAGGC 9151 29 100.0 32 ............................. TACCCGCCGCCTTCCGGCAGACGGATGAAATG 9212 29 100.0 32 ............................. AACGCAATCTGATAAACACGCATCGCCTGAGC 9273 29 100.0 32 ............................. AACCTATTACTGCAGGCTGGTTGAGAGTCAGG 9334 29 100.0 32 ............................. ATATAGCCGATAATCTTTTCATTTTCCCGGTA 9395 29 100.0 32 ............................. TAATCCTATCTTTTTGTCGAAACCTAAGAATT 9456 29 100.0 32 ............................. CCACGATCAAGAAAGATGCGCTGGAGGTGTCC 9517 29 100.0 32 ............................. CGGATTGATGCCGTATCGGGTCACTCATCTCT 9578 29 100.0 32 ............................. AGGGAGAGGTTATTCGCCGGATCATTGCAGTA 9639 29 100.0 32 ............................. TCGGTAGGCACCCCAGACACCGACGCTTTCCT 9700 29 100.0 32 ............................. GATTCCTGATTGTCACCGCTGCAGCCGATAAA 9761 29 100.0 32 ............................. ATTCCCAATCTTTTTTACTGCATCCTTTCTAT 9822 29 100.0 32 ............................. ACCCGTACTACGATTACGCCCGTCACGGCATC 9883 29 100.0 33 ............................. GAATTCTCTAAACAATAGAGACGCAATTACAGC 9945 29 100.0 32 ............................. AAATTCAGCTCAGGTACACCAGACAACTCAGA 10006 29 100.0 32 ............................. TGGAACGCTTGTCGCGCCGCCATGCTCAACGG 10067 29 100.0 32 ............................. GGGAATATCGTAAAGGTCGTCTACCACAATAT 10128 29 100.0 32 ............................. TCTGCGCGGATTTTTTCCAGTTCGGCATCCGC 10189 29 100.0 32 ............................. CGCAGCGAGGTTATCTTCTGACCGCTGCGGAA 10250 29 100.0 32 ............................. GATAATGAGGAGCAGCTTTTCGATGAGATTGG 10311 29 100.0 32 ............................. GACCACGCCCCCGGCATTATAGGTGTAGATCC 10372 29 100.0 32 ............................. CGATCGAGTATGCGTGTCAGCTTGCCGTGTAT 10433 29 100.0 32 ............................. GCTCATTAGAGCCTATCATCGCATACGTATCG 10494 29 100.0 32 ............................. TAATAGCCGTTAATCAGGGTACGCAGACGGAC 10555 29 100.0 32 ............................. CGAGCGCGGAGGGAGTTTATCTGCGCAGACTG 10616 29 100.0 32 ............................. CCAGTCTTGATACTGCTGTGTGTTCTTCCCGT 10677 29 100.0 32 ............................. GGTGGTACGGCCTTGATAGTCTTCACGACACC 10738 29 100.0 32 ............................. AGGGTACACCGTTCCGTTACAGCTTCAGTGCG 10799 29 100.0 32 ............................. TCGCCGCGGGTAGAAATTTACAGCATTGATGA 10860 29 100.0 32 ............................. GAAAGATGCCGGCTGCCTGCGGCCAGTACATC 10921 29 96.6 32 ...........A................. TTACCGATAGACAGGCTCGCACTCGCGCAGTT 10982 29 100.0 32 ............................. TTATTTCTTCGTCTGTTAGTTTGTTATTTTTC 11043 29 100.0 32 ............................. ATGATTTTCTCCTCAATTACCCGCTATAATAC 11104 29 96.6 32 .............T............... TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 11165 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 11226 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCTTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : ATTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //